-
1
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The gene ontology consortium
-
Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., et al. Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat Genet 25 1 (2000) 25-29
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
-
2
-
-
13244249634
-
Handling multiple testing while interpreting microarrays with the Gene Ontology Database
-
Osier M.V., Zhao H., and Cheung K.H. Handling multiple testing while interpreting microarrays with the Gene Ontology Database. BMC Bioinformatics 5 1 (2004) 124
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.1
, pp. 124
-
-
Osier, M.V.1
Zhao, H.2
Cheung, K.H.3
-
3
-
-
1542399989
-
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
-
Al-Shahrour F., Diaz-Uriarte R., and Dopazo J. FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics 20 4 (2004) 578-580
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 578-580
-
-
Al-Shahrour, F.1
Diaz-Uriarte, R.2
Dopazo, J.3
-
4
-
-
1242314757
-
Targeted cellular process profiling approach for uterine leiomyoma using cDNA microarray, proteomics and gene ontology analysis
-
Ahn W.S., Kim K.W., Bae S.M., Yoon J.H., Lee J.M., Namkoong S.E., et al. Targeted cellular process profiling approach for uterine leiomyoma using cDNA microarray, proteomics and gene ontology analysis. Int J Exp Pathol 84 6 (2003) 267-279
-
(2003)
Int J Exp Pathol
, vol.84
, Issue.6
, pp. 267-279
-
-
Ahn, W.S.1
Kim, K.W.2
Bae, S.M.3
Yoon, J.H.4
Lee, J.M.5
Namkoong, S.E.6
-
5
-
-
0042128690
-
Functional discrimination of gene expression patterns in terms of the gene ontology
-
Badea L. Functional discrimination of gene expression patterns in terms of the gene ontology. Pac Symp Biocomput (2003) 565-576
-
(2003)
Pac Symp Biocomput
, pp. 565-576
-
-
Badea, L.1
-
6
-
-
0037263812
-
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
-
Doniger S.W., Salomonis N., Dahlquist K.D., Vranizan K., Lawlor S.C., and Conklin B.R. MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol 4 1 (2003) R7
-
(2003)
Genome Biol
, vol.4
, Issue.1
-
-
Doniger, S.W.1
Salomonis, N.2
Dahlquist, K.D.3
Vranizan, K.4
Lawlor, S.C.5
Conklin, B.R.6
-
7
-
-
0038729567
-
Learning rule-based models of biological process from gene expression time profiles using gene ontology
-
Hvidsten T.R., Laegreid A., and Komorowski J. Learning rule-based models of biological process from gene expression time profiles using gene ontology. Bioinformatics 19 9 (2003) 1116-1123
-
(2003)
Bioinformatics
, vol.19
, Issue.9
, pp. 1116-1123
-
-
Hvidsten, T.R.1
Laegreid, A.2
Komorowski, J.3
-
8
-
-
0038492417
-
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)
-
Troyanskaya O.G., Dolinski K., Owen A.B., Altman R.B., and Botstein D. A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc Natl Acad Sci USA 100 14 (2003) 8348-8353
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.14
, pp. 8348-8353
-
-
Troyanskaya, O.G.1
Dolinski, K.2
Owen, A.B.3
Altman, R.B.4
Botstein, D.5
-
9
-
-
0042121250
-
ChipInfo: software for extracting gene annotation and gene ontology information for microarray analysis
-
Zhong S., Li C., and Wong W.H. ChipInfo: software for extracting gene annotation and gene ontology information for microarray analysis. Nucleic Acids Res 31 13 (2003) 3483-3486
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3483-3486
-
-
Zhong, S.1
Li, C.2
Wong, W.H.3
-
10
-
-
13244249628
-
Visualization and analysis of microarray and gene ontology data with treemaps
-
Baehrecke E.H., Dang N., Babaria K., and Shneiderman B. Visualization and analysis of microarray and gene ontology data with treemaps. BMC Bioinformatics 5 1 (2004) 84
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.1
, pp. 84
-
-
Baehrecke, E.H.1
Dang, N.2
Babaria, K.3
Shneiderman, B.4
-
11
-
-
12344269924
-
GO: TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
Boyle E.I., Weng S., Gollub J., Jin H., Botstein D., Cherry J.M., et al. GO: TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20 18 (2004) 3710-3715
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.2
Gollub, J.3
Jin, H.4
Botstein, D.5
Cherry, J.M.6
-
12
-
-
3242887152
-
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments
-
Khatri P., Bhavsar P., Bawa G., and Draghici S. Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Res 32 Web Server issue (2004) W449-W456
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.Web Server issue
-
-
Khatri, P.1
Bhavsar, P.2
Bawa, G.3
Draghici, S.4
-
13
-
-
3142673366
-
Using the gene ontology for mi-croarray data mining: a comparison of methods and application to age effects in human prefrontal cortex
-
Pavlidis P., Qin J., Arango V., Mann J.J., and Sibille E. Using the gene ontology for mi-croarray data mining: a comparison of methods and application to age effects in human prefrontal cortex. Neurochem Res 29 6 (2004) 1213-1222
-
(2004)
Neurochem Res
, vol.29
, Issue.6
, pp. 1213-1222
-
-
Pavlidis, P.1
Qin, J.2
Arango, V.3
Mann, J.J.4
Sibille, E.5
-
14
-
-
0004745667
-
Study and implementation of combined techniques for automatic extraction of terminology
-
Resnik P., and Klavans J. (Eds), MIT Press, Cambridge, MA
-
Daille B. Study and implementation of combined techniques for automatic extraction of terminology. In: Resnik P., and Klavans J. (Eds). The balancing act: combining symbolic and statistical approaches to language (1996), MIT Press, Cambridge, MA 49-66
-
(1996)
The balancing act: combining symbolic and statistical approaches to language
, pp. 49-66
-
-
Daille, B.1
-
15
-
-
78650633610
-
Automatic recognition of multi-word terms: the C-value/NC-value method
-
Frantzi K., Ananiadou S., and Mima H. Automatic recognition of multi-word terms: the C-value/NC-value method. Int J Digit Librar 3 2 (2000) 115-130
-
(2000)
Int J Digit Librar
, vol.3
, Issue.2
, pp. 115-130
-
-
Frantzi, K.1
Ananiadou, S.2
Mima, H.3
-
16
-
-
0034567337
-
A general method for sifting linguistic knowledge from structured terminologies
-
Grabar N., and Zweigenbaum P. A general method for sifting linguistic knowledge from structured terminologies. Proc AMIA Symp (2000) 310-314
-
(2000)
Proc AMIA Symp
, pp. 310-314
-
-
Grabar, N.1
Zweigenbaum, P.2
-
17
-
-
0042096721
-
Corpus linguistics and terminology extraction
-
Wright S, Budin G, editors, Amsterdam & Philadelphia: John Benjamins Publishing Co
-
Ahmad K, Rogers MA. Corpus linguistics and terminology extraction. In: Wright S, Budin G, editors. Hand-book of terminology management, vol. 2. Amsterdam & Philadelphia: John Benjamins Publishing Co.;2001. p. 725-60.
-
(2001)
Hand-book of terminology management
, vol.2
, pp. 725-760
-
-
Ahmad, K.1
Rogers, M.A.2
-
18
-
-
16544388629
-
A data-driven approach for extracting "the most specific term" for ontology development
-
Savova G.K., Harris M., Johnson T., Pakhomov S.V., and Chute C.G. A data-driven approach for extracting "the most specific term" for ontology development. AMIA Annu Symp Proc (2003) 579-583
-
(2003)
AMIA Annu Symp Proc
, pp. 579-583
-
-
Savova, G.K.1
Harris, M.2
Johnson, T.3
Pakhomov, S.V.4
Chute, C.G.5
-
19
-
-
25144475427
-
-
Cimiano P, Volker J. Text2Onto - A framework for ontology learning and data-driven change discovery. In: 10th International Conference on Applications of Natural Language to Information Systems (NLDB 2005): 2005; Alicante. Spain: Springer; 2005. p. 227-38.
-
Cimiano P, Volker J. Text2Onto - A framework for ontology learning and data-driven change discovery. In: 10th International Conference on Applications of Natural Language to Information Systems (NLDB 2005): 2005; Alicante. Spain: Springer; 2005. p. 227-38.
-
-
-
-
20
-
-
9544255696
-
Retrieving definitional content for ontology development
-
Smith L., and Wilbur W.J. Retrieving definitional content for ontology development. Comput Biol Chem 28 5-6 (2004) 387-391
-
(2004)
Comput Biol Chem
, vol.28
, Issue.5-6
, pp. 387-391
-
-
Smith, L.1
Wilbur, W.J.2
-
21
-
-
33746752066
-
The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case
-
Castro A.G., Rocca-Serra P., Stevens R., Taylor C., Nashar K., Ragan M.A., et al. The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case. BMC Bioinformatics 7 (2006) 267
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 267
-
-
Castro, A.G.1
Rocca-Serra, P.2
Stevens, R.3
Taylor, C.4
Nashar, K.5
Ragan, M.A.6
-
22
-
-
44649186340
-
Terminologies for text-mining; an experiment in the lipoprotein metabolism domain
-
Alexopoulou D., Wachter T., Pickersgill L., Eyre C., and Schroeder M. Terminologies for text-mining; an experiment in the lipoprotein metabolism domain. BMC Bioinformatics 9 Suppl. 4 (2008) S2
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 4
-
-
Alexopoulou, D.1
Wachter, T.2
Pickersgill, L.3
Eyre, C.4
Schroeder, M.5
-
23
-
-
22944440839
-
Learning domain ontologies from document warehouses and dedicated web sites
-
Navigli R., and Velardi P. Learning domain ontologies from document warehouses and dedicated web sites. Comput Linguist 30 2 (2004) 151-179
-
(2004)
Comput Linguist
, vol.30
, Issue.2
, pp. 151-179
-
-
Navigli, R.1
Velardi, P.2
-
25
-
-
0037396730
-
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro
-
Camon E., Magrane M., Barrell D., Binns D., Fleischmann W., Kersey P., et al. The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res 13 4 (2003) 662-672
-
(2003)
Genome Res
, vol.13
, Issue.4
, pp. 662-672
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Binns, D.4
Fleischmann, W.5
Kersey, P.6
-
26
-
-
33847264343
-
Enrichment or depletion of a GO category within a class of genes: which test?
-
Rivals I., Personnaz L., Taing L., and Potier M.C. Enrichment or depletion of a GO category within a class of genes: which test?. Bioinformatics 23 4 (2007) 401-407
-
(2007)
Bioinformatics
, vol.23
, Issue.4
, pp. 401-407
-
-
Rivals, I.1
Personnaz, L.2
Taing, L.3
Potier, M.C.4
-
27
-
-
70349468319
-
-
OCI. Available from
-
OCI. Available from: http://www.bioontology.org/wiki/index.php/OCI:Main_Page.
-
-
-
-
28
-
-
0017547820
-
A fast string searching algorithm
-
Boyer R., and Moore J. A fast string searching algorithm. Commun ACM 20 (1977) 762-772
-
(1977)
Commun ACM
, vol.20
, pp. 762-772
-
-
Boyer, R.1
Moore, J.2
-
30
-
-
0003535936
-
-
2nd ed. Hoboken, New Jersey: John Wiley & Sons, Inc
-
Agresti A. Categorical data analysis, 2nd ed. Hoboken, New Jersey: John Wiley & Sons, Inc.; 2002.
-
(2002)
Categorical data analysis
-
-
Agresti, A.1
-
32
-
-
70349454531
-
-
GSL-GNU Scientific Library. Available from
-
GSL-GNU Scientific Library. Available from: http://www.gnu.org/software/gsl/.
-
-
-
-
33
-
-
24744459879
-
Ceramide regulation of the tumor suppressor phosphatase PTEN in rafts isolated from neurotumor cell lines
-
Goswami R., Singh D., Phillips G., Kilkus J., and Dawson G. Ceramide regulation of the tumor suppressor phosphatase PTEN in rafts isolated from neurotumor cell lines. J Neurosci Res 81 4 (2005) 541-550
-
(2005)
J Neurosci Res
, vol.81
, Issue.4
, pp. 541-550
-
-
Goswami, R.1
Singh, D.2
Phillips, G.3
Kilkus, J.4
Dawson, G.5
-
34
-
-
70349470141
-
-
Available from
-
Available from: http://www.cdisc.org/index.html.
-
-
-
-
35
-
-
49949083854
-
The gene ontology as a source of lexical semantic knowledge for a biological natural language processing application
-
August, 1st, Toronto, CA;
-
Verspoor CM, Joslyn C, Papcun GJ. The gene ontology as a source of lexical semantic knowledge for a biological natural language processing application. In: SIGIR'03 workshop on text analysis and search for bioinformatics, August, 1st 2003. Toronto, CA; 2003. p. 51-6.
-
(2003)
SIGIR'03 workshop on text analysis and search for bioinformatics
, pp. 51-56
-
-
Verspoor, C.M.1
Joslyn, C.2
Papcun, G.J.3
-
36
-
-
84937298585
-
Principled disambiguation: discriminating adjective senses with modified nouns
-
Justeson J.S., and Katz S.M. Principled disambiguation: discriminating adjective senses with modified nouns. Comput Linguist 21 1 (1995) 1-27
-
(1995)
Comput Linguist
, vol.21
, Issue.1
, pp. 1-27
-
-
Justeson, J.S.1
Katz, S.M.2
-
37
-
-
41649118959
-
An open-source framework for large-scale, flexible evaluation of biomedical text mining systems
-
Baumgartner Jr. W.A., Cohen K.B., and Hunter L. An open-source framework for large-scale, flexible evaluation of biomedical text mining systems. J Biomed Discov Collab 3 (2008) 1
-
(2008)
J Biomed Discov Collab
, vol.3
, pp. 1
-
-
Baumgartner Jr., W.A.1
Cohen, K.B.2
Hunter, L.3
|