-
1
-
-
27144560185
-
Are the current ontologies in biology good ontologies?
-
16151402
-
Soldatova LN King RD Are the current ontologies in biology good ontologies? Nat Biotechnol 2005, 23(9):1095-1098 16151402
-
(2005)
Nat Biotechnol
, vol.23
, Issue.9
, pp. 1095-1098
-
-
Soldatova, L.N.1
King, R.D.2
-
3
-
-
33746752066
-
The use of concept maps during knowledge elicitation in ontology development processes - The nutrigenomics use case
-
1524992 16725019
-
Castro AG Rocca-Serra P Stevens R Taylor C Nashar K Ragan MA Sansone SA The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case BMC Bioinformatics 2006, 7:267 1524992 16725019
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 267
-
-
Castro, A.G.1
Rocca-Serra, P.2
Stevens, R.3
Taylor, C.4
Nashar, K.5
Ragan, M.A.6
Sansone, S.A.7
-
4
-
-
22044443709
-
The Sequence Ontology: A tool for the unification of genome annotations
-
1175956 15892872
-
Eilbeck K Lewis SE Mungall CJ Yandell M Stein L Durbin R Ashburner M The Sequence Ontology: A tool for the unification of genome annotations Genome Biol 2005, 6(5):R44 1175956 15892872
-
(2005)
Genome Biol
, vol.6
, Issue.5
-
-
Eilbeck, K.1
Lewis, S.E.2
Mungall, C.J.3
Yandell, M.4
Stein, L.5
Durbin, R.6
Ashburner, M.7
-
5
-
-
33645277092
-
The MGED Ontology: A resource for semantics-based description of microarray experiments
-
16428806
-
Whetzel PL Parkinson H Causton HC Fan L Fostel J Fragoso G Game L Heiskanen M Morrison N Rocca-Serra P Sansone SA Taylor C White J Stoeckert CJ Jr The MGED Ontology: A resource for semantics-based description of microarray experiments Bioinformatics 2006, 22:866-73 16428806
-
(2006)
Bioinformatics
, vol.22
, pp. 866-873
-
-
Whetzel, P.L.1
Parkinson, H.2
Causton, H.C.3
Fan, L.4
Fostel, J.5
Fragoso, G.6
Game, L.7
Heiskanen, M.8
Morrison, N.9
Rocca-Serra, P.10
Sansone, S.A.11
Taylor, C.12
White, J.13
Stoeckert Jr., C.J.14
-
6
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
10802651
-
Ashburner M Ball CA Blake JA Botstein D Butler H Cherry JM Davis AP Dolinski K Dwight SS Eppig JT Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium Nat Genet 2000, 25(1):25-29 10802651
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
7
-
-
3242758189
-
Systems biology of the 2-cell mouse embryo
-
15237213
-
Evsikov AV de VWN Peaston AE Radford EE Fancher KS Chen FH Blake JA Bult CJ Latham KE Solter D Systems biology of the 2-cell mouse embryo Cytogenet Genome Res 2004, 105(2-4):240-250 15237213
-
(2004)
Cytogenet Genome Res
, vol.105
, Issue.2-4
, pp. 240-250
-
-
Evsikov, A.V.1
De, V.W.N.2
Peaston, A.E.3
Radford, E.E.4
Fancher, K.S.5
Chen, F.H.6
Blake, J.A.7
Bult, C.J.8
Latham, K.E.9
Solter, D.10
-
8
-
-
0041627697
-
A methodology to migrate the gene ontology to a description logic environment using DAML+OIL
-
World Scientific Publishing Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 3-7 January 2003; Hawaii, USA
-
Wroe CJ Stevens RD Goble CA Ashburner M A methodology to migrate the gene ontology to a description logic environment using DAML+OIL Proceedings of the 8th Pacific Symposium on Biocomputing (PSB 2003) World Scientific Publishing Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 2003, 624-35 3-7 January 2003; Hawaii, USA
-
(2003)
Proceedings of the 8th Pacific Symposium on Biocomputing (PSB 2003)
, pp. 624-635
-
-
Wroe, C.J.1
Stevens, R.D.2
Goble, C.A.3
Ashburner, M.4
-
10
-
-
7944224750
-
SNOMED CT milestones: Endorsements are added to already-impressive standards credentials
-
15457880
-
Spackman KA SNOMED CT milestones: Endorsements are added to already-impressive standards credentials Healthc Inform 2004, 21(9):54-56 15457880
-
(2004)
Healthc Inform
, vol.21
, Issue.9
, pp. 54-56
-
-
Spackman, K.A.1
-
11
-
-
0842283371
-
A reference ontology for biomedical informatics: The Foundational Model of Anatomy
-
14759820
-
Rosse C Mejino JVL A reference ontology for biomedical informatics: The Foundational Model of Anatomy J Biomed Inform 2003, 36(6):478-500 14759820
-
(2003)
J Biomed Inform
, vol.36
, Issue.6
, pp. 478-500
-
-
Rosse, C.1
Mejino, J.V.L.2
-
12
-
-
0345863927
-
The Unified Medical Language System (UMLS): Integrating biomedical terminology
-
308795 14681409
-
Bodenreider O The Unified Medical Language System (UMLS): Integrating biomedical terminology Nucleic Acids Res 2004, 32:D267-70 308795 14681409
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bodenreider, O.1
-
14
-
-
21944445759
-
An ontology for cell types
-
551541 15693950
-
Bard J Rhee SY Ashburner M An ontology for cell types Genome Biol 2005, 6(2):R21 551541 15693950
-
(2005)
Genome Biol
, vol.6
, Issue.2
-
-
Bard, J.1
Rhee, S.Y.2
Ashburner, M.3
-
15
-
-
33748792021
-
Bio-ontologies: Current trends and future directions
-
1847325 16899495
-
Bodenreider O Stevens R Bio-ontologies: Current trends and future directions Brief Bioinform 2006, 7(3):256-74 1847325 16899495
-
(2006)
Brief Bioinform
, vol.7
, Issue.3
, pp. 256-274
-
-
Bodenreider, O.1
Stevens, R.2
-
16
-
-
33646256547
-
Beyond the data deluge: Data integration and bio-ontologies
-
16564748
-
Blake JA Bult CJ Beyond the data deluge: Data integration and bio-ontologies J Biomed Inform 2006, 39(3):314-20 16564748
-
(2006)
J Biomed Inform
, vol.39
, Issue.3
, pp. 314-320
-
-
Blake, J.A.1
Bult, C.J.2
-
17
-
-
0032810063
-
An ontology for bioinformatics applications
-
10383475
-
Baker PG Goble CA Bechhofer S Paton NW Stevens R Brass A An ontology for bioinformatics applications Bioinformatics 1999, 15(6):510-520 10383475
-
(1999)
Bioinformatics
, vol.15
, Issue.6
, pp. 510-520
-
-
Baker, P.G.1
Goble, C.A.2
Bechhofer, S.3
Paton, N.W.4
Stevens, R.5
Brass, A.6
-
18
-
-
23144448699
-
GoPubMed: Exploring PubMed with the Gene Ontology
-
1160231
-
Doms A Schroeder M GoPubMed: Exploring PubMed with the Gene Ontology Nucleic Acids Res 2005, 33:W783-786 1160231 15980585
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Doms, A.1
Schroeder, M.2
-
19
-
-
84886766612
-
-
GoPubMed [http://gopubmed.org/]
-
GoPubMed
-
-
-
21
-
-
14044254746
-
Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature
-
517822 15383839
-
Mueller HM Kenny EE Sternberg PW Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature PLoS Biol 2004, 2(11):e309 517822 15383839
-
(2004)
PLoS Biol
, vol.2
, Issue.11
-
-
Mueller, H.M.1
Kenny, E.E.2
Sternberg, P.W.3
-
22
-
-
0042591491
-
Update on XplorMed: A web server for exploring scientific literature
-
168945 12824439
-
Perez-Iratxeta C Pérez AJ Bork P Andrade MA Update on XplorMed: A web server for exploring scientific literature Nucleic Acids Res 2003, 31(13):3866-8 168945 12824439
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3866-3868
-
-
Perez-Iratxeta, C.1
Pérez, A.J.2
Bork, P.3
Andrade, M.A.4
-
23
-
-
84886767317
-
-
GoMiner [http://discover.nci.nih.gov/gominer/]
-
-
-
-
27
-
-
84874661310
-
-
Protégé OWL plug-in
-
Protégé OWL plug-in [http://protege.stanford.edu/overview/ protege-owl.html]
-
-
-
-
28
-
-
84886759495
-
-
CmapTools [http://cmap.ihmc.us/]
-
CmapTools
-
-
-
30
-
-
33947130673
-
Understanding and using the meaning of statements in a bio-ontology: Recasting the Gene Ontology in OWL
-
1819394 17311682
-
Aranguren ME Bechhofer S Lord P Sattler U Stevens R Understanding and using the meaning of statements in a bio-ontology: Recasting the Gene Ontology in OWL BMC Bioinformatics 2007, 8:57 1819394 17311682
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 57
-
-
Aranguren, M.E.1
Bechhofer, S.2
Lord, P.3
Sattler, U.4
Stevens, R.5
-
31
-
-
84886758647
-
-
Definition of mammals [http://www.biology-online.org/dictionary/Mammals]
-
Definition of Mammals
-
-
-
32
-
-
38049150488
-
Representing default knowledge in biomedical ontologies: Application to the integration of anatomy and phenotype ontologies
-
2180186 17925014
-
Hoehndorf R Loebe F Kelso J Herre H Representing default knowledge in biomedical ontologies: Application to the integration of anatomy and phenotype ontologies BMC Bioinformatics 2007, 8(1):377-2180186 17925014
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 377
-
-
Hoehndorf, R.1
Loebe, F.2
Kelso, J.3
Herre, H.4
-
33
-
-
2442719329
-
Defaults, context, and knowledge: Alternatives for OWL-indexed knowledge bases
-
World Scientific Publishing Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 6-10 January 2004; Hawaii, USA
-
Rector A Defaults, context, and knowledge: Alternatives for OWL-indexed knowledge bases Proceedings of the 9th Pacific Symposium on Biocomputing (PSB 2004) World Scientific Publishing Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 2004, 226-237 6-10 January 2004; Hawaii, USA
-
(2004)
Proceedings of the 9th Pacific Symposium on Biocomputing (PSB 2004)
, pp. 226-237
-
-
Rector, A.1
-
34
-
-
2442640613
-
The compositional structure of Gene Ontology terms
-
World Scientific Publishing Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 6-10 January 2004; Hawaii, USA
-
Ogren PV Cohen KB Acquaah-Mensah GK Eberlein J Hunter L The compositional structure of Gene Ontology terms Proceedings of the 9th Pacific Symposium on Biocomputing (PSB 2004) World Scientific Publishing Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 2004, 214-225 6-10 January 2004; Hawaii, USA
-
(2004)
Proceedings of the 9th Pacific Symposium on Biocomputing (PSB 2004)
, pp. 214-225
-
-
Ogren, P.V.1
Cohen, K.B.2
Acquaah-Mensah, G.K.3
Eberlein, J.4
Hunter, L.5
-
35
-
-
15944422180
-
Implications of compositionality in the Gene Ontology for its curation and usage
-
World Scientific Publishing Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 4-8 January 2005; Hawaii, USA
-
Ogren PV Cohen KB Hunter L Implications of compositionality in the Gene Ontology for its curation and usage Proceedings of the 10th Pacific Symposium on Biocomputing (PSB 2005) World Scientific Publishing Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 2005, 174-185 4-8 January 2005; Hawaii, USA
-
(2005)
Proceedings of the 10th Pacific Symposium on Biocomputing (PSB 2005)
, pp. 174-185
-
-
Ogren, P.V.1
Cohen, K.B.2
Hunter, L.3
-
36
-
-
7044274047
-
Carrot2 and language properties in Web search results clustering
-
Springer Ruiz EM, Segovia J, Szczepaniak PS 5-6 May 2003; Madrid, Spain
-
Stefanowski J Weiss D Carrot2 and language properties in Web search results clustering Proceedings of the First International Atlantic Web Intelligence Conference Springer Ruiz EM, Segovia J, Szczepaniak PS 2003, 240-249 5-6 May 2003; Madrid, Spain
-
(2003)
Proceedings of the First International Atlantic Web Intelligence Conference
, pp. 240-249
-
-
Stefanowski, J.1
Weiss, D.2
-
37
-
-
33646719717
-
Using NLP techniques to identify legal ontology components: Concepts and Relations
-
Lame G Using NLP techniques to identify legal ontology components: Concepts and Relations Artificial Intelligence and Law 2004, 12:379-396
-
(2004)
Artificial Intelligence and Law
, vol.12
, pp. 379-396
-
-
Lame, G.1
-
38
-
-
11444263509
-
LDL size: Does it matter?
-
15635490
-
Berneis K Rizzo M LDL size: Does it matter? Swiss Med Wkly 2004, 134(49-50):720-724 15635490
-
(2004)
Swiss Med Wkly
, vol.134
, Issue.49-50
, pp. 720-724
-
-
Berneis, K.1
Rizzo, M.2
-
41
-
-
25144475427
-
Text2Onto - A Framework for Ontology Learning and Data-driven Change Discovery
-
Springer Montoyo A, Muñoz R, Métais E: Springer 15-17 June 2005; Alicante, Spain
-
Cimiano P Völker J Text2Onto - A Framework for Ontology Learning and Data-driven Change Discovery Proceedings of the 10th International Conference on Applications of Natural Language to Information Systems (NLDB 2005) Springer Montoyo A, Muñoz R, Métais E: Springer 2005, 227-238 15-17 June 2005; Alicante, Spain
-
(2005)
Proceedings of the 10th International Conference on Applications of Natural Language to Information Systems (NLDB 2005)
, pp. 227-238
-
-
Cimiano, P.1
Völker, J.2
-
42
-
-
42549133329
-
Learning Domain Ontologies from Document Warehouses and Dedicated Websites
-
Navigli R Verlardi P Learning Domain Ontologies from Document Warehouses and Dedicated Websites Computational Linguistics 2004, 30:2
-
(2004)
Computational Linguistics
, vol.30
, pp. 2
-
-
Navigli, R.1
Verlardi, P.2
-
45
-
-
0012990385
-
Automatic acquisition of hyponyms from large text corpora
-
Association for Computational Linguistics 23-28 August 1992; Nantes, France
-
Hearst M Automatic acquisition of hyponyms from large text corpora Proceedings of the Fourteenth International Conference on Computational Linguistics Association for Computational Linguistics 1992, 539-545 23-28 August 1992; Nantes, France
-
(1992)
Proceedings of the Fourteenth International Conference on Computational Linguistics
, pp. 539-545
-
-
Hearst, M.1
|