Switchable electrode controlled by Boolean logic gates using enzymes as input signals

Bioelectrochemistry

Volumn 77, Issue 1, 2009, Pages 69-73

  Wang, Xuemei ^b   Zhou, Jian ^a   Tam, Tsz Kin ^a   Katz, Evgeny ^a   Pita, Marcos ^a  

^a CLARKSON UNIVERSITY   (United States)

^b SOUTHEAST UNIVERSITY   (China)

Author keywords

Enzyme logic; Esterase; Glucose oxidase; Invertase; Signal responsive material; Switchable electrode

Indexed keywords

ENZYME LOGIC; ESTERASE; INVERTASE; SIGNAL-RESPONSIVE MATERIAL; SWITCHABLE ELECTRODE;

BOOLEAN FUNCTIONS; CATALYSTS; CONDUCTING POLYMERS; ELECTROCHEMICAL CORROSION; ENZYMES; GLUCOSE; GLUCOSE OXIDASE; GLUCOSE SENSORS; LOGIC GATES; PH EFFECTS; POLYMER FILMS; POLYMERS; SWELLING; TIN;

ELECTROCHEMICAL ELECTRODES;

ENZYME; ESTERASE; INDIUM TIN OXIDE; POLYMER; PYRIDINE; UREASE;

ARTICLE; ELECTROCHEMISTRY; ELECTRODE; ENZYME ACTIVATION; INFORMATION SCIENCE; OXIDATION REDUCTION REACTION; PH; PROTON TRANSPORT; REACTION ANALYSIS; SYNTHESIS;

ANIMALS; BIOCATALYSIS; ELECTRIC IMPEDANCE; ELECTROCHEMISTRY; ELECTRODES; ENZYMES; HYDROGEN-ION CONCENTRATION; LOGIC; TIME FACTORS;

EID: 70349445405     PISSN: 15675394     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bioelechem.2009.06.012     Document Type: Article

References (31)

1. Arkin A., and Ross J. Computational functions in biochemical reaction networks. Biophys. J. 67 (1994) 560-578
2. Hjelmfelt A., and Ross J. Implementation of logic functions and computations by chemical kinetics. Physica D 84 (1995) 180-193
3. de Silva A.P., Uchiyama S., Vance T.P., and Wannalerse B. A supramolecular chemistry basis for molecular logic and computation. Coord. Chem. Rev. 251 (2007) 1623-1632
4. de Silva A.P., and Uchiyama S. Molecular logic and computing. Nat. Nanotechnol. 2 (2007) 399-410
5. Szacilowski K. Digital information processing in molecular systems. Chem. Rev. 108 (2008) 3481-3548
6. Pischel U. Chemical approaches to molecular logic elements for addition and subtraction Angew. Chem. Int. Ed. 46 (2007) 4026-4040
7. Stojanovic M.N., Stefanovic D., LaBean T., and Yan H. In: Willner I., and Katz E. (Eds). Bioelectronics: from Theory to Applications (2005), Wiley-VCH, Weinheim 427-455
8. Ezziane Z. DNA computing: applications and challenges. Nanotechnology 17 (2006) R27-R39
9. Sivan S., and Lotan N. A biochemical logic gate using an enzyme and its inhibitor. 1. The inhibitor as switching element. Biotechnol. Prog. 15 (1999) 964-970
10. Sivan S., Tuchman S., and Lotan N. A biochemical logic gate using an enzyme and its inhibitor. Part II: the logic gate. Biosystems 70 (2003) 21-33
11. Deonarine A.S., Clark S.M., and Konermann L. Implementation of a multifunctional logic gate based on folding/unfolding transitions of a protein. Future Gener. Comput. Syst. 19 (2003) 87-97
12. Ashkenazi G., Ripoll D.R., Lotan N., and Scheraga H.A. A molecular switch for biochemical logic gates: conformational studies. Biosens. Bioelectron. 12 (1997) 85-95
13. Unger R., and Moult J. Towards computing with proteins. Proteins 63 (2006) 53-64
14. Baron R., Lioubashevski O., Katz E., Niazov T., and Willner I. Two coupled enzymes perform in parallel the "AND" and "InhibAND" logic gates operations. Org. Biomol. Chem. 4 (2006) 989-991
15. Baron R., Lioubashevski O., Katz E., Niazov T., and Willner I. Logic gates and elementary computing by enzymes. J. Phys. Chem. A 110 (2006) 8548-8553
16. Baron R., Lioubashevski O., Katz E., Niazov T., and Willner I. Elementary arithmetic operations by enzymes: a model for metabolic pathway based computing. Angew. Chem. Int. Ed. 45 (2006) 1572-1576
17. Strack G., Pita M., Ornatska M., and Katz E. Boolean logic gates using enzymes as input signals. ChemBioChem 9 (2008) 1260-1266
18. Niazov T., Baron R., Katz E., Lioubashevski O., and Willner I. Concatenated logic gates using four coupled biocatalysts operating in series. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 17160-17163
19. Strack G., Ornatska M., Pita M., and Katz E. Biocomputing security system: concatenated enzyme-based logic gates operating as a biomolecular keypad lock. J. Am. Chem. Soc. 130 (2008) 4234-4235
20. Privman V., Strack G., Solenov D., Pita M., and Katz E. Optimization of enzymatic biochemical logic for noise reduction and scalability: how many biocomputing gates can be interconnected in a circuit?. J. Phys. Chem. B 112 (2008) 11777-11784
21. Privman V., Arugula M.A., Halámek J., Pita M., and Katz E. Network analysis of biochemical logic for noise reduction and stability: a system of three coupled enzymatic AND gates. J. Phys. Chem. B 113 (2009) 5301-5310
22. Pita M., Minko S., and Katz E. Enzyme-based logic systems and their applications for novel multi-signal-responsive materials, J. Mater. Sci.: Materials in. Medicine 20 (2009) 457-462
23. Tokarev I., Gopishetty V., Zhou J., Pita M., Motornov M., Katz E., and Minko S. Stimuli-responsive hydrogel membranes coupled with biocatalytic processes. ACS Appl. Mater. Interfaces 1 (2009) 532-536
24. Pita M., Krämer M., Zhou J., Poghossian A., Schöning M.J., Fernández V.M., and Katz E. Optoelectronic properties of nanostructured ensembles controlled by biomolecular logic systems. ACS Nano 2 (2008) 2160-2166
25. Motornov M., Zhou J., Pita M., Gopishetty V., Tokarev I., Katz E., and Minko S. Chemical transformers from nanoparticle ensembles operated with logic. Nano. Lett. 8 (2008) 2993-2997
26. Motornov M., Zhou J., Pita M., Tokarev I., Gopishetty V., Katz E., and Minko S. Integrated multifunctional nanosystem from command nanoparticles and enzymes. Small 5 (2009) 817-820
27. Zhou J., Tam T.K., Pita M., Ornatska M., Minko S., and Katz E. Bioelectrocatylic system coupled with enzyme-based biocomputing ensembles performing Boolean logic operations: approaching "smart" physiologically controlled biointerfaces. ACS Appl. Mater. Interfaces 1 (2009) 144-149
28. Privman M., Tam T.K., Pita M., and Katz E. Switchable electrode controlled by enzyme logic network system: approaching physiologically regulated bioelectronics. J. Am. Chem. Soc. 131 (2009) 1314-1321
29. Amir L., Tam T.K., Pita M., Meijler M.M., Alfonta L., and Katz E. Biofuel cell controlled by enzyme logic systems. J. Am. Chem. Soc. 131 (2009) 826-832
30. Tam T.K., Pita M., Ornatska, M., and Katz E. Biofuel cell controlled by enzyme logic network - approaching physiologically regulated devices. Bioelectrochemistry 76 (2009) 4-9
31. Tam T.K., Ornatska M., Pita M., Minko S., and Katz E. Polymer brush-modified electrode with switchable and tunable redox activity for bioelectronic applications. J. Phys. Chem. C 112 (2008) 8438-8445