Tracking medical students' clinical experiences using natural language processing

Journal of Biomedical Informatics

Volumn 42, Issue 5, 2009, Pages 781-789

  Denny, Joshua C ^a   Bastarache, Lisa ^a   Sastre, Elizabeth Ann ^a   Spickard III, Anderson ^a  

^a VANDERBILT UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

Competency assessment; Concept identification; Education portfolios; Experience tracking; Medical education; Natural language processing; UMLS

Indexed keywords

COMPETENCY ASSESSMENT; CONCEPT IDENTIFICATION; EXPERIENCE TRACKING; NATURAL LANGUAGE PROCESSING; UMLS;

ALGORITHMS; AUTOMATION; COMPUTATIONAL LINGUISTICS; INDUSTRIAL RESEARCH; LINGUISTICS; MATHEMATICAL OPERATORS; MEDICAL EDUCATION; MEDICAL PROBLEMS; NATURAL LANGUAGE PROCESSING SYSTEMS;

STUDENTS;

ACCURACY; ANAMNESIS; ARTICLE; AUTOMATION; CLASSIFICATION ALGORITHM; CLINICAL ASSESSMENT; CLINICAL COMPETENCE; CLINICAL FEATURE; CONTROLLED STUDY; LANGUAGE PROCESSING; MEDICAL STUDENT; PRIORITY JOURNAL; RECEIVER OPERATING CHARACTERISTIC; TASK PERFORMANCE; TREATMENT PLANNING; WORK EXPERIENCE;

CLINICAL COMPETENCE; DATA INTERPRETATION, STATISTICAL; EDUCATION, MEDICAL, GRADUATE; HUMANS; MEDICAL INFORMATICS; NATURAL LANGUAGE PROCESSING; STUDENTS, MEDICAL; UNIFIED MEDICAL LANGUAGE SYSTEM; USER-COMPUTER INTERFACE;

EID: 70349437268     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2009.02.004     Document Type: Article

References (31)

1. Corbett E.C., and Whitcomb M. The AAMC project on the clinical education of medical students: clinical skills education (2004), Association of American Medical Colleges, Washington, DC
2. Goroll A.H., Sirio C., Duffy F.D., LeBlond R.F., Alguire P., Blackwell T.A., et al. A new model for accreditation of residency programs in internal medicine. Ann Intern Med 140 11 (2004) 902-909
3. Langdorf M.I., Montague B.J., Bearie B., and Sobel C.S. Quantification of procedures and resuscitations in an emergency medicine residency. J Emerg Med 16 1 (1998) 121-127
4. Rattner S.L., Louis D.Z., Rabinowitz C., Gottlieb J.E., Nasca T.J., Markham F.W., et al. Documenting and comparing medical students' clinical experiences. JAMA 286 9 (2001) 1035-1040
5. Alderson T.S., and Oswald N.T. Clinical experience of medical students in primary care: use of an electronic log in monitoring experience and in guiding education in the Cambridge Community Based Clinical Course. Med Educ 33 6 (1999) 429-433
6. Bird S.B., Zarum R.S., and Renzi F.P. Emergency medicine resident patient care documentation using a hand-held computerized device. Acad Emerg Med 8 12 (2001) 1200-1203
7. Bardes C.L., Wenderoth S., Lemise R., Ortanez P., and Storey-Johnson C. Specifying student-patient encounters, web-based case logs, and meeting standards of the liaison committee on medical education. Acad Med 80 12 (2005) 1127-1132
8. Mattana J., Charitou M., Mills L., Baskin C., Steinberg H., Tu C., et al. Personal digital assistants: a review of their application in graduate medical education. Am J Med Qual 20 5 (2005) 262-267
9. Carney P.A., Pipas C.F., Eliassen M.S., Mengshol S.C., Fall L.H., Schifferdecker K.E., et al. An analysis of students' clinical experiences in an integrated primary care clerkship. Acad Med 77 7 (2002) 681-687
10. Sequist T.D., Singh S., Pereira A.G., Rusinak D., and Pearson S.D. Use of an electronic medical record to profile the continuity clinic experiences of primary care residents. Acad Med 80 4 (2005) 390-394
11. Spickard III A., Gigante J., Stein G., and Denny J.C. A randomized study of feedback on student write-ups using an electronic portfolio. J Gen Int Med 23 7 (2008) 979-984
12. Chapman W.W., Cooper G.F., Hanbury P., Chapman B.E., Harrison L.H., and Wagner M.M. Creating a text classifier to detect radiology reports describing mediastinal findings associated with inhalational anthrax and other disorders. J Am Med Inform Assoc 10 5 (2003) 494-503
13. Denny J.C., Smithers J.D., Miller R.A., and Spickard III A. "Understanding" medical school curriculum content using KnowledgeMap. J Am Med Inform Assoc 10 4 (2003) 351-362
14. Friedman C., Shagina L., Lussier Y., and Hripcsak G. Automated encoding of clinical documents based on natural language processing. J Am Med Inform Assoc 11 5 (2004) 392-402
15. Hazlehurst B., Frost H.R., Sittig D.F., and Stevens V.J. MediClass: a system for detecting and classifying encounter-based clinical events in any electronic medical record. J Am Med Inform Assoc 12 5 (2005) 517-529
16. Brown S.H., Speroff T., Fielstein E.M., Bauer B.A., Wahner-Roedler D.L., Greevy R., et al. EQuality: electronic quality assessment from narrative clinical reports. Mayo Clin Proc 81 11 (2006) 1472-1481
17. Denny J.C., Miller R.A., Waitman L.R., Arrieta M.A., and Peterson J.F. Identifying QT prolongation from ECG impressions using a general-purpose Natural Language Processor. Int J Med Inform 78 1 (2009) S34-S42
18. Denny J.C., Spickard III A., Miller R.A., Schildcrout J., Darbar D., Rosenbloom S.T., et al. Identifying UMLS concepts from ECG Impressions using KnowledgeMap. AMIA Annu Symp Proc (2005) 196-200
19. Aronson A.R. Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. Proc/AMIA Ann Symp (2001) 17-21
20. Zeng Q.T., Goryachev S., Weiss S., Sordo M., Murphy S.N., and Lazarus R. Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system. BMC Med Inform Decision Making 6 (2006) 30
21. Denny J.C., Miller R.A., Johnson K.B., and Spickard A. Development and evaluation of a clinical note section header terminology. AMIA Annu Symp Proc (2008) 156-160
22. Denny J.C., Smithers J.D., Armstrong B., and Spickard III A. "Where do we teach what?" Finding broad concepts in the medical school curriculum. J Gen Intern Med 20 10 (2005) 943-946
23. Cross-validation [cited 2008 July 3]. Available from: http://en.wikipedia.org/wiki/Cross-validation.
24. Meystre S., and Haug P.J. Automation of a problem list using natural language processing. BMC Med Inform Decision Making 5 (2005) 30
25. Elkin P.L., Brown S.H., Bauer B.A., Husser C.S., Carruth W., Bergstrom L.R., et al. A controlled trial of automated classification of negation from clinical notes. BMC Med Inform Decision Making 5 (2005) 13
26. Huang Y., and Lowe H.J. A novel hybrid approach to automated negation detection in clinical radiology reports. J Am Med Inform Assoc 14 3 (2007) 304-311
27. Chapman W.W., Bridewell W., Hanbury P., Cooper G.F., and Buchanan B.G. A simple algorithm for identifying negated findings and diseases in discharge summaries. J Biomed Inform 34 5 (2001) 301-310
28. Kogan J.R., and Shea J.A. Psychometric characteristics of a write-up assessment form in a medicine core clerkship. Teach Learn Med 17 2 (2005) 101-106
29. Nadkarni P., Chen R., and Brandt C. UMLS concept indexing for production databases: a feasibility study. J Am Med Inform Assoc 8 1 (2001) 80-91
30. Meystre S., and Haug P.J. Natural language processing to extract medical problems from electronic clinical documents: performance evaluation. J Biomed Inform 39 6 (2006) 589-599
31. Chapman W.W., Chu D., and Dowling J.N. ConText an algorithm for identifying contextual features from clinical text. BioNLP 2007 Biol Trans Clin Lang Process (2007) 81-88