메뉴 건너뛰기




Volumn 59, Issue 8, 2009, Pages 1941-1946

Ideonella azotifigens sp. nov., an aerobic diazotroph of the Betaproteobacteria isolated from grass rhizosphere soil, and emended description of the genus Ideonella

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; RNA 16S; BACTERIAL DNA; CATALASE; FATTY ACID; HYDROXYBUTYRIC ACID; OXIDOREDUCTASE; RIBOSOME DNA;

EID: 70349314790     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.003368-0     Document Type: Article
Times cited : (30)

References (30)
  • 1
    • 26244447151 scopus 로고    scopus 로고
    • Amakata, D., Matsuo, Y., Shimono, K., Park, J. K., Yun, C. S., Matsuda, H., Yokota, A. & Kawamukai, M. (2005). Mitsuaria chitosanitabida gen. nov., sp. nov., an aerobic, chitosanase-producing member of the 'Betaproteobacteria'. Int J Syst Evol Microbiol 55, 1927-1932.
    • Amakata, D., Matsuo, Y., Shimono, K., Park, J. K., Yun, C. S., Matsuda, H., Yokota, A. & Kawamukai, M. (2005). Mitsuaria chitosanitabida gen. nov., sp. nov., an aerobic, chitosanase-producing member of the 'Betaproteobacteria'. Int J Syst Evol Microbiol 55, 1927-1932.
  • 2
    • 0345869640 scopus 로고    scopus 로고
    • New molecular screening tools for analysis of free-living diazotrophs in soil
    • Bürgmann, H., Widmer, F., Von Sigler, W. & Zeyer, J. (2004). New molecular screening tools for analysis of free-living diazotrophs in soil. Appl Environ Microbiol 70, 240-247.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 240-247
    • Bürgmann, H.1    Widmer, F.2    Von Sigler, W.3    Zeyer, J.4
  • 3
    • 0017177489 scopus 로고
    • Ecological distribution of Spirillum lipoferum Beijerinck
    • Dobereiner, J., Marriel, I. E. & Nery, M. (1976). Ecological distribution of Spirillum lipoferum Beijerinck. Can J Microbiol 22, 1464-1473.
    • (1976) Can J Microbiol , vol.22 , pp. 1464-1473
    • Dobereiner, J.1    Marriel, I.E.2    Nery, M.3
  • 4
    • 0025869974 scopus 로고
    • Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA
    • Eden, P. A., Schmidt, T. M., Blakemore, R. P. & Pace, N. R. (1991). Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA. Int J Syst Bacteriol 41, 324-325.
    • (1991) Int J Syst Bacteriol , vol.41 , pp. 324-325
    • Eden, P.A.1    Schmidt, T.M.2    Blakemore, R.P.3    Pace, N.R.4
  • 6
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 7
    • 70350729953 scopus 로고    scopus 로고
    • Felsenstein, J, 2005, PHYLIP (phylogeny inference package) version 3.64. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • Felsenstein, J. (2005). PHYLIP (phylogeny inference package) version 3.64. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
  • 8
    • 0030034795 scopus 로고    scopus 로고
    • A hidden Markov Model approach to variation among sites in rate of evolution
    • Felsenstein, J. & Churchill, G. A. (1996). A hidden Markov Model approach to variation among sites in rate of evolution. Mol Biol Evol 13, 93-104.
    • (1996) Mol Biol Evol , vol.13 , pp. 93-104
    • Felsenstein, J.1    Churchill, G.A.2
  • 9
    • 70350729954 scopus 로고    scopus 로고
    • Gonzales, J. M. & Saiz-Jimenez, C. (2004). Using the iCycler iQ detection system to estimate microbial DNA base composition from melt curves. Technical Note 3084. Hercules, CA: Bio-Rad.
    • Gonzales, J. M. & Saiz-Jimenez, C. (2004). Using the iCycler iQ detection system to estimate microbial DNA base composition from melt curves. Technical Note 3084. Hercules, CA: Bio-Rad.
  • 10
    • 0020662371 scopus 로고
    • Nitrogenase activity (acetylene reduction) of root-associated, cold-climate Azospirillum, Enterobacter, Klebsiella, and Pseudomonas species during growth on various carbon sources and at various partial pressures of oxygen
    • Haahtela, K., Kari, K. & Sundaman, V. (1982). Nitrogenase activity (acetylene reduction) of root-associated, cold-climate Azospirillum, Enterobacter, Klebsiella, and Pseudomonas species during growth on various carbon sources and at various partial pressures of oxygen. Appl Environ Microbiol 45, 563-570.
    • (1982) Appl Environ Microbiol , vol.45 , pp. 563-570
    • Haahtela, K.1    Kari, K.2    Sundaman, V.3
  • 11
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones, D. T., Taylor, W. R. & Thornton, J. M. (1992). The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8, 275-282.
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 12
    • 0024307824 scopus 로고
    • Evaluation of the maximumlikelihood estimate of the evolutionary tree topologies from DNAsequence data, and the branching order in Hominoidea
    • Kishino, H. & Hasegawa, M. (1989). Evaluation of the maximumlikelihood estimate of the evolutionary tree topologies from DNAsequence data, and the branching order in Hominoidea. J Mol Evol 29, 170-179.
    • (1989) J Mol Evol , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 13
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • Konstantinidis, K. T. & Tiedje, J. M. (2005). Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci U S A 102, 2567-2572.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 2567-2572
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 15
    • 0031038893 scopus 로고    scopus 로고
    • Nitrogenase activity and regeneration of the cellular ATP pool in Azotobacter vinelandii adapted to different oxygen concentrations
    • Linkerhägner, K. & Oleze, J. (1997). Nitrogenase activity and regeneration of the cellular ATP pool in Azotobacter vinelandii adapted to different oxygen concentrations. J Bacteriol 179, 1362-1367.
    • (1997) J Bacteriol , vol.179 , pp. 1362-1367
    • Linkerhägner, K.1    Oleze, J.2
  • 16
    • 0028303763 scopus 로고
    • Ideonella dechloratans gen. nov., sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron-acceptor
    • Malmqvist, A., Welander, T., Moore, E., Ternstrom, A., Molin, G. & Stenstrom, I. (1994). Ideonella dechloratans gen. nov., sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron-acceptor. Syst Appl Microbiol 17, 58-64.
    • (1994) Syst Appl Microbiol , vol.17 , pp. 58-64
    • Malmqvist, A.1    Welander, T.2    Moore, E.3    Ternstrom, A.4    Molin, G.5    Stenstrom, I.6
  • 17
    • 0018035931 scopus 로고
    • Effect of oxygen and nitrate on nitrogen fixation and denitrification by Azospirillum brasilense grown in continuous culture
    • Nelson, L. M. & Knowles, R. (1978). Effect of oxygen and nitrate on nitrogen fixation and denitrification by Azospirillum brasilense grown in continuous culture. Can J Microbiol 24, 1395-1403.
    • (1978) Can J Microbiol , vol.24 , pp. 1395-1403
    • Nelson, L.M.1    Knowles, R.2
  • 18
    • 24244482387 scopus 로고    scopus 로고
    • Microbially-mediated nitrogen cycling
    • Edited by R. S. Burlage, R. Atlas, D. Stahl, G. Geesey & G. Sayler. New York: Oxford University Press
    • Paerl, H. W. (1998). Microbially-mediated nitrogen cycling. In Techniques in Microbial Ecology, pp. 3-30. Edited by R. S. Burlage, R. Atlas, D. Stahl, G. Geesey & G. Sayler. New York: Oxford University Press.
    • (1998) Techniques in Microbial Ecology , pp. 3-30
    • Paerl, H.W.1
  • 21
    • 37749001498 scopus 로고    scopus 로고
    • Biodiversity of diazotrophic bacteria within the soil, root and stem of field-grown maize
    • Roesch, L. F. W., Camargo, F. A. O., Bento, F. M. & Triplett, E. W. (2008). Biodiversity of diazotrophic bacteria within the soil, root and stem of field-grown maize. Plant Soil 302, 91-104.
    • (2008) Plant Soil , vol.302 , pp. 91-104
    • Roesch, L.F.W.1    Camargo, F.A.O.2    Bento, F.M.3    Triplett, E.W.4
  • 23
    • 34250884486 scopus 로고    scopus 로고
    • Purification and characterization of a novel esterase (beta-hydroxypalmitate methyl ester hydrolase) and prevention of the expression of virulence by Ralstonia solanacearum
    • Shinohara, M., Nakajima, N. & Uehara, Y. (2007). Purification and characterization of a novel esterase (beta-hydroxypalmitate methyl ester hydrolase) and prevention of the expression of virulence by Ralstonia solanacearum. J Appl Microbiol 103, 152-162.
    • (2007) J Appl Microbiol , vol.103 , pp. 152-162
    • Shinohara, M.1    Nakajima, N.2    Uehara, Y.3
  • 24
    • 70350703988 scopus 로고    scopus 로고
    • Defining taxonomic ranks
    • 3rd edn, Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer-Verlag
    • Stackebrandt, E. (2006). Defining taxonomic ranks. In The Prokaryotes. A Handbook on the Biology of Bacteria, 3rd edn, vol. 1, pp. 29-57. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer-Verlag.
    • (2006) The Prokaryotes. A Handbook on the Biology of Bacteria , vol.1 , pp. 29-57
    • Stackebrandt, E.1
  • 26
    • 1642330746 scopus 로고    scopus 로고
    • Development and testing of a DNA microarray to assess nitrogenase (nifH) gene diversity
    • Steward, G. F., Jenkins, B. D., Ward, B. B. & Zehr, J. P. (2004). Development and testing of a DNA microarray to assess nitrogenase (nifH) gene diversity. Appl Environ Microbiol 70, 1455-1465.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1455-1465
    • Steward, G.F.1    Jenkins, B.D.2    Ward, B.B.3    Zehr, J.P.4
  • 27
    • 70350720549 scopus 로고    scopus 로고
    • Strunk, O. & Ludwig, W. (1997). ARB: a software environment for sequence data, v2.5. Munich, Germany: Department of Microbiology, Technical University of Munich.
    • Strunk, O. & Ludwig, W. (1997). ARB: a software environment for sequence data, v2.5. Munich, Germany: Department of Microbiology, Technical University of Munich.
  • 28
    • 0032924340 scopus 로고    scopus 로고
    • Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll acontaining obligate aerobe belonging to the beta-subclass of the Proteobacteria
    • Suyama, T., Shigematsu, T., Takaichi, S., Nodasaka, Y., Fujikawa, S., Hosoya, H., Tokiwa, Y., Kanagawa, T. & Hanada, S. (1999). Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll acontaining obligate aerobe belonging to the beta-subclass of the Proteobacteria. Int J Syst Bacteriol 49, 449-457.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 449-457
    • Suyama, T.1    Shigematsu, T.2    Takaichi, S.3    Nodasaka, Y.4    Fujikawa, S.5    Hosoya, H.6    Tokiwa, Y.7    Kanagawa, T.8    Hanada, S.9
  • 29
    • 65949111437 scopus 로고    scopus 로고
    • Phenotypic characterization and the principles of comparative systematics
    • Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology
    • Tindall, B. J., Sikorski, J., Smibert, R. A. & Krieg, N. R. (2007). Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Microbiology, pp. 330-393. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. A. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology.
    • (2007) Methods for General and Molecular Microbiology , pp. 330-393
    • Tindall, B.J.1    Sikorski, J.2    Smibert, R.A.3    Krieg, N.R.4
  • 30
    • 0038234799 scopus 로고    scopus 로고
    • Nitrogenase gene diversity and microbial community structure: A cross-system comparison
    • Zehr, J. P., Jenkins, B. D., Short, S. M. & Steward, G. F. (2003). Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ Microbiol 5, 539-554.
    • (2003) Environ Microbiol , vol.5 , pp. 539-554
    • Zehr, J.P.1    Jenkins, B.D.2    Short, S.M.3    Steward, G.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.