-
1
-
-
0033604306
-
Recombination between genomic RNAs of two cucumoviruses under conditions of minimal selection pressure
-
Aaziz, R. & Tepfer, M. (1999). Recombination between genomic RNAs of two cucumoviruses under conditions of minimal selection pressure. Virology 263, 282-289.
-
(1999)
Virology
, vol.263
, pp. 282-289
-
-
Aaziz, R.1
Tepfer, M.2
-
2
-
-
0030918026
-
RNAs 4A and 5 are present in tomato aspermy virus and both subgroups of cucumber mosaic virus
-
Blanchard, C. L., Higgins, T. J. & Anderson, B. J. (1997). RNAs 4A and 5 are present in tomato aspermy virus and both subgroups of cucumber mosaic virus. Arch Virol 142, 1273-1283.
-
(1997)
Arch Virol
, vol.142
, pp. 1273-1283
-
-
Blanchard, C.L.1
Higgins, T.J.2
Anderson, B.J.3
-
3
-
-
12344296268
-
Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus
-
Bonnet, J., Fraile, A., Sacristan, S., Malpica, J. M. & Garcia-Arenal, F. (2005). Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus. Virology 332, 359-368.
-
(2005)
Virology
, vol.332
, pp. 359-368
-
-
Bonnet, J.1
Fraile, A.2
Sacristan, S.3
Malpica, J.M.4
Garcia-Arenal, F.5
-
5
-
-
0036196421
-
Inter- and intramolecular recombinations in the cucumber mosaic virus genome related to adaptation to Alstroemeria
-
Chen, Y. K., Goldbach, R. & Prins, M. (2002). Inter- and intramolecular recombinations in the cucumber mosaic virus genome related to adaptation to Alstroemeria. J Virol 76, 4119-4124.
-
(2002)
J Virol
, vol.76
, pp. 4119-4124
-
-
Chen, Y.K.1
Goldbach, R.2
Prins, M.3
-
6
-
-
35549007517
-
Expression of the Arabidopsis Xrn4p 5′-3′ exoribonuclease facilitates degradation of tombusvirus RNA and promotes rapid emergence of viral variants in plants
-
Cheng, C. P., Jaag, H. M., Jonczyk, M., Serviene, E. & Nagy, P. D. (2007). Expression of the Arabidopsis Xrn4p 5′-3′ exoribonuclease facilitates degradation of tombusvirus RNA and promotes rapid emergence of viral variants in plants. Virology 368, 238-248.
-
(2007)
Virology
, vol.368
, pp. 238-248
-
-
Cheng, C.P.1
Jaag, H.M.2
Jonczyk, M.3
Serviene, E.4
Nagy, P.D.5
-
7
-
-
48849109656
-
The promiscuous evolutionary history of the family Bromoviridae
-
Codoñer, F. M. & Elena, S. F. (2008). The promiscuous evolutionary history of the family Bromoviridae. J Gen Virol 89, 1739-1747.
-
(2008)
J Gen Virol
, vol.89
, pp. 1739-1747
-
-
Codoñer, F.M.1
Elena, S.F.2
-
8
-
-
58549088679
-
Production of cucumber mosaic virus RNA5 and its role in recombination
-
de Wispelaere, M. & Rao, A. L. N. (2008). Production of cucumber mosaic virus RNA5 and its role in recombination. Virology 384, 179-191.
-
(2008)
Virology
, vol.384
, pp. 179-191
-
-
de Wispelaere, M.1
Rao, A.L.N.2
-
9
-
-
9944258454
-
A map of the diversity of RNA3 recombinants appearing in plants infected with Cucumber mosaic virus and Tomato aspermy virus
-
de Wispelaere, M., Gaubert, S., Trouilloud, S., Belin, C. & Tepfer, M. (2005). A map of the diversity of RNA3 recombinants appearing in plants infected with Cucumber mosaic virus and Tomato aspermy virus. Virology 331, 117-127.
-
(2005)
Virology
, vol.331
, pp. 117-127
-
-
de Wispelaere, M.1
Gaubert, S.2
Trouilloud, S.3
Belin, C.4
Tepfer, M.5
-
11
-
-
0027978631
-
Increase in the relative fitness of a plant virus RNA associated with its recombinant nature
-
Fernandez-Cuartero, B., Burgyan, J., Aranda, M. A., Salanki, K., Moriones, E. & Garcia-Arenal, F. (1994). Increase in the relative fitness of a plant virus RNA associated with its recombinant nature. Virology 203, 373-377.
-
(1994)
Virology
, vol.203
, pp. 373-377
-
-
Fernandez-Cuartero, B.1
Burgyan, J.2
Aranda, M.A.3
Salanki, K.4
Moriones, E.5
Garcia-Arenal, F.6
-
12
-
-
0031015206
-
Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus
-
Fraile, A., Alonso-Prados, J. L., Aranda, M. A., Bernal, J. J., Malpica, J. M. & Garcia-Arenal, F. (1997). Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus. J Virol 71, 934-940.
-
(1997)
J Virol
, vol.71
, pp. 934-940
-
-
Fraile, A.1
Alonso-Prados, J.L.2
Aranda, M.A.3
Bernal, J.J.4
Malpica, J.M.5
Garcia-Arenal, F.6
-
13
-
-
0034798786
-
Variability and genetic structure of plant virus populations
-
Garcia-Arenal, F., Fraile, A. & Malpica, J. M. (2001). Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 39, 157-186.
-
(2001)
Annu Rev Phytopathol
, vol.39
, pp. 157-186
-
-
Garcia-Arenal, F.1
Fraile, A.2
Malpica, J.M.3
-
14
-
-
45849125349
-
Nucleotide sequence analysis of peanut stunt virus Rp strain suggests the role of homologous recombination in cucumovirus evolution
-
Kiss, L., Sebestyen, E., Laszlo, E., Salamon, P., Balazs, E. & Salanki, K. (2008). Nucleotide sequence analysis of peanut stunt virus Rp strain suggests the role of homologous recombination in cucumovirus evolution. Arch Virol 153, 1373-1377.
-
(2008)
Arch Virol
, vol.153
, pp. 1373-1377
-
-
Kiss, L.1
Sebestyen, E.2
Laszlo, E.3
Salamon, P.4
Balazs, E.5
Salanki, K.6
-
15
-
-
33845361366
-
GARD: A genetic algorithm for recombination detection
-
Kosakovsky Pond, S. L., Posada, D., Gravenor, M. B., Woelk, C. H. & Frost, S. D. (2006). GARD: a genetic algorithm for recombination detection. Bioinformatics 22, 3096-3098.
-
(2006)
Bioinformatics
, vol.22
, pp. 3096-3098
-
-
Kosakovsky Pond, S.L.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.5
-
16
-
-
2642569971
-
Molecular population genetics of Cucumber mosaic virus in California: Evidence for founder effects and reassortment
-
Lin, H. X., Rubio, L., Smythe, A. B. & Falk, B. W. (2004). Molecular population genetics of Cucumber mosaic virus in California: evidence for founder effects and reassortment. J Virol 78, 6666-6675.
-
(2004)
J Virol
, vol.78
, pp. 6666-6675
-
-
Lin, H.X.1
Rubio, L.2
Smythe, A.B.3
Falk, B.W.4
-
17
-
-
13444251528
-
RDP2: Recombination detection and analysis from sequence alignments
-
Martin, D. P., Williamson, C. & Posada, D. (2005). RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21, 260-262.
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
-
18
-
-
43749124906
-
RNA2D3D: A program for generating, viewing, and comparing 3-dimensional models of RNA
-
Martinez, H. M., Maizel, J. V., Jr & Shapiro, B. A. (2008). RNA2D3D: a program for generating, viewing, and comparing 3-dimensional models of RNA. J Biomol Struct Dyn 25, 669-683.
-
(2008)
J Biomol Struct Dyn
, vol.25
, pp. 669-683
-
-
Martinez, H.M.1
Maizel Jr, J.V.2
Shapiro, B.A.3
-
19
-
-
0031724231
-
Getting a handle on RNA virus recombination
-
Miller, W. A. & Koev, G. (1998). Getting a handle on RNA virus recombination. Trends Microbiol 6, 421-423.
-
(1998)
Trends Microbiol
, vol.6
, pp. 421-423
-
-
Miller, W.A.1
Koev, G.2
-
20
-
-
70350434179
-
Analysis of recombination between viral RNAs and transgene mRNA under conditions of high selection pressure in favour of recombinants
-
in press, doi:10.1099/vir.0.013771-0
-
Morroni, M., Thompson, J. R. & Tepfer, M. (2009). Analysis of recombination between viral RNAs and transgene mRNA under conditions of high selection pressure in favour of recombinants. J Gen Virol (in press). doi:10.1099/vir.0.013771-0
-
(2009)
J Gen Virol
-
-
Morroni, M.1
Thompson, J.R.2
Tepfer, M.3
-
22
-
-
0026482354
-
Cucumber mosaic virus
-
Palukaitis, P., Roossinck, M. J., Dietzgen, R. G. & Francki, R. I. (1992). Cucumber mosaic virus. Adv Virus Res 41, 281-348.
-
(1992)
Adv Virus Res
, vol.41
, pp. 281-348
-
-
Palukaitis, P.1
Roossinck, M.J.2
Dietzgen, R.G.3
Francki, R.I.4
-
23
-
-
35048903026
-
Biological properties and relative fitness of inter-subgroup cucumber mosaic virus RNA 3 recombinants produced in vitro
-
Pierrugues, O., Guilbaud, L., Fernandez-Delmond, I., Fabre, F., Tepfer, M. & Jacquemond, M. (2007). Biological properties and relative fitness of inter-subgroup cucumber mosaic virus RNA 3 recombinants produced in vitro. J Gen Virol 88, 2852-2861.
-
(2007)
J Gen Virol
, vol.88
, pp. 2852-2861
-
-
Pierrugues, O.1
Guilbaud, L.2
Fernandez-Delmond, I.3
Fabre, F.4
Tepfer, M.5
Jacquemond, M.6
-
24
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada, D. & Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
25
-
-
0036122463
-
Evolutionary history of Cucumber mosaic virus deduced by phylogenetic analyses
-
Roossinck, M. J. (2002). Evolutionary history of Cucumber mosaic virus deduced by phylogenetic analyses. J Virol 76, 3382-3387.
-
(2002)
J Virol
, vol.76
, pp. 3382-3387
-
-
Roossinck, M.J.1
-
26
-
-
0031060334
-
Support of a cucumber mosaic virus satellite RNA maps to a single amino acid proximal to the helicase domain of the helper virus
-
Roossinck, M. J., Kaplan, I. & Palukaitis, P. (1997). Support of a cucumber mosaic virus satellite RNA maps to a single amino acid proximal to the helicase domain of the helper virus. J Virol 71, 608-612.
-
(1997)
J Virol
, vol.71
, pp. 608-612
-
-
Roossinck, M.J.1
Kaplan, I.2
Palukaitis, P.3
-
27
-
-
0031048458
-
Two novel subgenomic RNAs derived from RNA 3 of tomato aspermy cucumovirus
-
Shi, B., Ding, S. & Symons, R. H. (1997). Two novel subgenomic RNAs derived from RNA 3 of tomato aspermy cucumovirus. J Gen Virol 78, 505-510.
-
(1997)
J Gen Virol
, vol.78
, pp. 505-510
-
-
Shi, B.1
Ding, S.2
Symons, R.H.3
-
28
-
-
70349548313
-
-
Swofford, D. L, 1998, PAUP: phylogenetic analysis using parsimony and other methods, version 4. Sunderland, MA: Sinauer Associates
-
Swofford, D. L. (1998). PAUP: phylogenetic analysis using parsimony (and other methods), version 4. Sunderland, MA: Sinauer Associates.
-
-
-
-
29
-
-
48849085251
-
Structural and functional characterization of the 5′ region of subgenomic RNA5 of cucumber mosaic virus
-
Thompson, J. R., Buratti, E., de Wispelaere, M. & Tepfer, M. (2008). Structural and functional characterization of the 5′ region of subgenomic RNA5 of cucumber mosaic virus. J Gen Virol 89, 1729-1738.
-
(2008)
J Gen Virol
, vol.89
, pp. 1729-1738
-
-
Thompson, J.R.1
Buratti, E.2
de Wispelaere, M.3
Tepfer, M.4
-
30
-
-
38349079832
-
Evaluation of potential risks associated with recombination in transgenic plants expressing viral sequences
-
Turturo, C., Friscina, A., Gaubert, S., Jacquemond, M., Thompson, J. R. & Tepfer, M. (2008). Evaluation of potential risks associated with recombination in transgenic plants expressing viral sequences. J Gen Virol 89, 327-335.
-
(2008)
J Gen Virol
, vol.89
, pp. 327-335
-
-
Turturo, C.1
Friscina, A.2
Gaubert, S.3
Jacquemond, M.4
Thompson, J.R.5
Tepfer, M.6
-
31
-
-
33847637711
-
Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae
-
Valli, A., Lopez-Moya, J. J. & Garcia, J. A. (2007). Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae. J Gen Virol 88, 1016-1028.
-
(2007)
J Gen Virol
, vol.88
, pp. 1016-1028
-
-
Valli, A.1
Lopez-Moya, J.J.2
Garcia, J.A.3
-
32
-
-
23144463133
-
Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots
-
Xayaphoummine, A., Bucher, T. & Isambert, H. (2005). Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots. Nucleic Acids Res 33, W605-W610.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Xayaphoummine, A.1
Bucher, T.2
Isambert, H.3
|