Comparison of morphological and biological control of exchange with transient storage zones in a field-scale flume

Journal of Geophysical Research: Biogeosciences

Volumn 114, Issue 2, 2009, Pages

  Orr, Cailin H ^a,b   Clark, Jeffery J ^c   Wilcock, Peter R ^a,d   Finlay, Jacques C ^a   Doyle, Martin W ^e  

^a UNIVERSITY OF MINNESOTA   (United States)

^b WASHINGTON STATE UNIVERSITY   (United States)

^c LAWRENCE UNIVERSITY   (United States)

^d The Johns Hopkins University   (United States)

^e University of North Carolina at Chapel Hill   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BAR; BENTHOS; BIOLOGICAL CONTROL; BIOMASS; COMPARATIVE STUDY; GEOMORPHOLOGY; GRAVEL; HETEROGENEITY; MORPHOLOGY; NUTRIENT LIMITATION; PERIPHYTON; RESIDENCE TIME; RETENTION; SEDIMENT-WATER INTERFACE; SPATIAL VARIATION; STORAGE; TRACER;

EID: 70349248037     PISSN: 01480227     EISSN: None     Source Type: Journal    
DOI: 10.1029/2008JG000825     Document Type: Article

References (64)

1. Alexander, G. G., and J. D. Allen (2006), Stream restoration in the Upper Midwest, USA, Restor. Ecol., 1, 595-604.
2. Alexander, R. B., R. A. Smith, and G. E. Schwarz (2000), Effect of stream channel size on the delivery of nitrogen to the Gulf of Mexico, Nature, 403, 758-761.
3. American Public Health Association (APHA) (1995), Standard Methods for the Examination of Water and Wastewater, 19th ed., Washington, D. C.
4. Argerich, A., E. Marti, F. Sabater, M. Ribot, D. Von Schiller, and J. L. Riera (2008), Combined effects of leaf litter inputs and a flood on nutrient retention in a Mediterranean mountain stream during fall, Limnol Oceanogr., 53, 631-641. (Pubitemid 351705414)
5. Battin, T. J., and D. Sengschmitt (1999a), Hydrologie flow paths control dissolved organic carbon fluxes and metabolism in an alpine stream hyporheic zone, Water Resour. Res., 35, 3159-3169.
6. Battin, T. J., and D. Sengschmitt (1999b), Linking sediment biofilms, hydrodynamics and river bed clogging: Evidence from a large river, Microb. Ecol., 37, 185-196.
7. Battin, T. J., L. A. Kaplan, J. D. Newbold, and C. M. D. Hansen (2003), Contributions of microbial biofilms to ecosystem processes in stream mesocosms, Nature, 426, 439-442.
8. Bukaveckas, P. A. (2007), Effects of channel restoration on water velocity, transient storage, and channel nutrient uptake in a channelized stream, Environ. Sci. Technol., 41, 1570-1576.
9. Cardenas, M. B., and J. L. Wilson (2007), Hydrodynamics of coupled flow above and below a sediment-water interface with triangular bedforms, Adv. Water Resour., 30, 301-313.
10. Cardenas, M. B., J. L. Wilson, and V. A. Zlornik (2004), Impact of heterogeneity, bed forms, and channel curvature on hyporheic exchange, Water Resour. Res., 40, W08307, doi:10.1029/2004WR003008.
11. Cardenas, M. B., J. L. Wilson, and R. Haggerty (2008), Residence time of bedform-driven hyporheic exchange, Adv. Water Resour., 31, 1382-1386.
12. Dent, C. L., G. S. dimming, and S. R. Carpenter (2002), Multiple states in river and lake Ecosystems, Philos. Trans. R. Soc London, Ser. B, 357, 635-645.
13. Dent, C. L., N. B. Grimm, E. Marti, J. W. Edmonds, J. C. Henry, and J. R. Welter (2007), Variability in surface-subsurface hydrologie interactions and implications for nutrient retention in an arid-land stream, J. Geophys. Res., 112, G04004, doi:10.1029/2007JG000467.
14. Doyle, M. W., E. H. Stanley, and J. M. Harbor (2003), Hydrogeomorphic controls on phosphorus retention in streams, Water Resour. Res., 39(6), 1147, doi:10.1029/2003WR002038.
15. Duff, J. H., A. J. Tesoriero, W. B. Richardson, E. A. Strauss, and M. D. Munn (2008), Whole-stream response to nitrate loading in three streams draining agricultural landscapes, J. Environ. Qual., 37, 1133-1144.
16. Ensign, S. H., and M. W. Doyle (2006), Nutrient spiraling in streams and river networks, J. Geophys. Res., 111, G04009, doi:10.1029/ 2005JG000114.
17. Fisher, S. G., N. B. Grimm, E. Marti, R. M. Holmes, and J. B. Jones Jr. (1998), Material spiraling in Stream Corridors: A telescoping ecosystem model, Ecosystems, 1, 19-34.
18. Fisher, S. G., J. B. Heffeman, R. A. Sponseller, and J. R. Welter (2007), Functional ecomorphology: Feedbacks between form and function in fluvial landscape ecosystems, Geomorphology, 80, 84-96.
19. Genereux, D. P., and H. F. Hemond (1992), Determination of gas exchange rates for a small stream on Walker Branch watershed, Tennessee, Water Resour. Res., 28, 2365-2374.
20. Grimm, N. B., and S. G. Fisher (1984), Exchange between interstitial and surface water: Implications for stream metabolism and nutrient cycling, Hydrobiologia, 111, 219-228.
21. Holmes, R. M., S. G. Fisher, N. B. Grimm, and B. J. Harper (1998), The impact of flash floods on microbial distribution and biogeochemistry in the parafluvial zone of a desert stream, Freshwater Biol., 40, 641-654.
22. Hondzo, M., and D. Lyn (1999), Quantified small-scale turbulence inhibits the growth of a green alga, Freshwater Biol, 41, 51-61. (Pubitemid 29150540)
23. Hondzo, M., and H. Wang (2002), Effects of turbulence on growth and metabolism of periphyton in a laboratory flume, Water Resour. Res., 35(12), 1277, doi:10.1029/2002WR001409. (Pubitemid 36251307)
24. Hope, D., S. M. Palmer, M. F. Billett, and J. J. C. Dawson (2001), Carbon dioxide and methane evasion from a temperate peatland stream, Limnol. Oceanogr., 46, 847-857. (Pubitemid 32540591)
25. Kasahara, T., and A. R. Hill (2006), Effects of riffle-step restoration on hyporheic zone chemistry in N-rich lowland streams, Can. J. Fish. Aquat. Sci., 63, 120-133.
26. Kemp, M. J., and W. K. Dodds (2002), The influence of ammonium, nitrate, and dissolved oxygen concentrations on uptake, nitrification, and denitrification rates associated with prairie stream substrata, Limnol. Oceanogr., 47, 1380-1393.
27. Kim, B., A. Jackman, and F. Triska (1990), Modeling transient storage and nitrate uptake kinetics in a flume containing a natural periphyton community, Water Resour. Res., 26, 505-515.
28. Kim, B., A. Jackman, and F. Triska (1992), Modeling biotic uptake by periphyton and transient hyporheic storage of nitrate in a natural stream, Water Resour. Res., 28, 2743-2752. (Pubitemid 23377368)
29. King, D. B., and E. S. Saltzman (1995), Measurement of the diffusion coefficient of sulfur hexafluoride in water, J. Geophys. Res., 100, 7083-7088.
30. Klotz, R. L. (1988), Sediment control of soluble reactive phosphorus in Hoxie Gorge Creek, New York, Can. J. Fish. Aquat. Sci., 45, 2026-2034.
31. Klotz, R. L. (1991), Temporal relation between soluble reactive phosphorus and factors in stream water and sediments in Hoxie Gorge Creek, New York, Can. J. Fish. Aquat. Sci., 48, 84-90.
32. Knighton, D. (1998), Fluvial Forms and Processes: A New Perspective, 383 pp., Arnold, London.
33. Kondolf, G. M., et al. (2006), Process-based ecological river restoration: Visualizing three-dimensional connectivity and dynamic vectors to recover lost linkages, Ecol. Soc., 11, 5.
34. Lautz, L. K., and D. I. Siegel (2007), The effect of transient storage on nitrate uptake lengths in streams: An inter-site comparison, Hydrol. Process., 21, 3533-3548.
35. Marion, A., A. I. Packman, M. Zaramella, and A. Bottacin-Busolin (2008), Hyporheic flows in stratified beds, Water Resour. Res., 44, W09433, doi: 10.1029/2007WR006079.
36. Marti, E., and F. Sabater (1996), High variability in temporal and spatial nutrient retention in Mediterranean streams, Ecology, 77, 854-869. (Pubitemid 126494912)
37. Marzolf, E. R., P. J. Mulholland, and A. D. Steinman (1994), Improvements to the diurnal upstream-downstream dissolved oxygen change technique for determining whole-stream metabolism in small streams, Can. J. Fish. Aquat. Sci., 51, 1591-1599.
38. McClain, M. E., et al. (2003), Biogeochemical hot spots and hot moments at the interface of terrestrial and aquatic ecosystems, Ecosystems, 6, 301-312.
39. Mulholland, P. J., and D. L. DeAngelis (2000), Surface-subsurface exchange and nutrient Spiraling, in Streams and Groundwaters, edited by J. R. Jones and P. J. Mulholland, pp. 149-166, Academic, San Diego, Calif.
40. Mulholland, P. J., A. D. Steinman, E. R. Marzolf, D. R. Hart, and D. L. DeAngelis (1994), Effect of periphyton biomass on hydraulic characteristics and nutrient cycling in streams, Oecologia, 98, 40-47.
41. Mulholland, P. J., et al. (2002), Can uptake length in streams be determined by nutrient addition experiments? Results from an interbiome comparison study, J N. Am. Benthol Soc., 21, 544-560.
42. On, C. H., K. L. Rogers, and E. H. Stanley (2006), Channel morphology and P uptake following the removal of a small dam, J. N. Am. Benthol. Soc., 25, 556-568.
43. Palmer, M. A., et al. (2005), Standards for ecological successful river restoration, J. Appl. Ecol., 42, 208-217.
44. Peterson, B. J., et al. (2001), Control of nitrogen export from watersheds by headwater streams, Science, 292, 86-90.
45. Rehg, K. J., A. I. Packman, and J. Ren (2005), Effect of suspended sediment characteristics and bed sediment transport on streambed clogging, Hydrol. Process., 19, 413-427.
46. Roberts, B. J., and P. J. Mulholland (2007), In-stream biotic control on nutrient biogeochemistry in a forested stream, West Fork of Walker Branch, J. Geophys. Res.; 112, G04002, doi:10.1029/2007JG000422.
47. Roberts, B. J., P. J. Mulholland, and J. N. Houser (2007), Effecte of upland disturbance and instream restoration on hydrodynamics and ammonium uptake in headwater streams, J. N. Am. Benthol. Soc., 26, 120-135.
48. Runkel, R. L. (1998), One dimensional transport with inflow and storage (OTIS): A solute transport model for streams and rivers, U.S. Geol. Surv. Water Resour. Invest Rep., 98-4018.
49. Runkel, R. L. (2002), A new metric for determining the importance of transient storage, J. N. Am. Benthol. Soc., 21, 529-543.
50. Ryan, R. J., A. I. Packman, and S. S. Kilham (2007), Relating phosphorus uptake to changes in transient storage and streambed sediment characteristics in headwater tributaries of Valley Creek, and urbanizing watershed, J. Hydrol., 366, 444-457.
51. Steinman, A. D., and G. A. Lamberti (1996), Biomass and pigments of benthic algae, in Methods in Stream Ecology, edited by F. R. Hauer and G. A. Lamberti, pp. 295-313, Academic, New York.
52. Stofleth, J. M., F. D. Shields Jr., and G. A. Fox (2008), Hyporheic and total transient storage in small, sand-bed streams, Hydrol. Process., 22, 1885-1894.
53. Stream Solute Workshop (1990), Concepts and methods for assessing solute dynamics in stream ecosystems, J. N. Am. Benthol. Soc., 9, 95-119.
54. Sweeney, B. W., T. L. Bott, J. K. Jackson, L. A. Kaplan, J. D. Newbold, L. J. Standley, W. C. Hession, and R. J. Horwitz (2004), Riparian deforestation, stream narrowing, and loss of stream ecosystem services, Proc. Natl. Acad. Sci. U. S. A., 101, 14, 132-14, 137.
55. Tuominen,'L., T. Kairesalo, and H. Hartikainen (1994), Comparison of methods for inhibiting bacterial activity in sediment, Appl. Environ. Microbiol, 60, 3454-3457. (Pubitemid 24272386)
56. Valett, H. M., S. G. Fisher, N. B. Grimm, and P. Camill (1994), Vertical hydrologie exchange and ecological stability of a desert stream ecosystem, Ecology, 2, 548-560. (Pubitemid 2059872)
57. Valett, H. M., J. A. Monice, C. N. Dahm, and M. E. Campana (1996), Parent lithology, groundwater-surfacewater exchange and nitrate retention in headwater streams, Limnol. Oceanogr., 41, 333-345.
58. Wagner, B. J., and J. W. Harvey (1997), Experimental design for estimating parameters of rate-limited mass transfer: An analysis of stream tracer studies, Water Resour. Res., 33, 1731-1741.
59. Wanninkhof, R. (1992), Relationship between gas exchange and wind speed over the Ocean, J. Geophys. Res., 97, 7373-7381.
60. Webster, J. R., and T. P. Ehrman (1996), Solute dynamics, in Methods in Stream Ecology, edited by E. R. Hauer and G. A. Lamberti, pp. 145-160, Academic, San Diego, Calif.
61. Webster, J. R., et al. (2003), Factors affecting ammonium uptake in streams-An inter-biome perspective, Freshwater Biol., 48, 1329-1352.
62. Wetzel, R. G., and G. E. Likens (1991), Limnological Analyses, 2nd ed., Springer, New York.
63. Wolheim, W. M., B. J. Peterson, L. A. Desgan, J. E. Hobbie, B. Hooker, W. B. Bowden, K. J. Arscott, A. E. Hershey, and J. C. Finlay (2001), Influence of stream size on ammonium and suspended particulate nitrogen processing, Limnol. Oceanogr., 46, 1-13.
64. Young, R. G., and A. D. Huryn (1998), Comment: Improvements to the diurnal upstream downstream dissolved oxygen change technique for determining whole-stream metabolism in small streams, Can. J. Fish. Aquat Sci., 55, 1784-1785.