Automated image analysis to observe pellet morphology in liquid cultures of filamentous fungi such as the basidiomycete Coprinopsis cinerea

Current Trends in Biotechnology and Pharmacy

Volumn 3, Issue 3, 2009, Pages 241-253

  Rühl, Martin ^a   Kües, Ursula ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

Automated image analysis; Coprinopsis cinerea; Filamentous organism; Hyphal aggregates; Pellet morphology

Indexed keywords

BASIDIOMYCETES; COMPUTER PROGRAM; CONTROLLED STUDY; COPRINOPSIS CINEREA; DIGITAL FILTERING; FUNGAL MORPHOLOGY; FUNGUS CULTURE; FUNGUS GROWTH; FUNGUS HYPHAE; HIGH TEMPERATURE; IMAGE ANALYSIS; LABORATORY AUTOMATION; LIQUID CULTURE; NONHUMAN; REVIEW; SUBMERGED CELL CULTURE;

COPRINOPSIS CINEREA; FUNGI;

EID: 70349094124     PISSN: 09738916     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (23)

1. Braun, S. and Vecht-Lifshitz, S.E. (1991). Mycelial morphology and metabolite production. Trends in Biotechnology, 9: 63-68.
2. Fazenda, M.L., Seviour, R., McNeil, B. and Harvey, L.M. (2008). Submerged culture fermentation of 'higher fungi': the macrofungi. Advances in Applied Microbiology, 63, 63: 33-103.
3. Michel, F.C., Grulke, E.A. and Reddy, C.A. (1990). Development of a stirred tank reactor system for the production of lignin peroxidases (ligninases) by Phanerochaete chrysosporium Bkm-F-1767. Journal of Industrial Microbiology, 5: 103-112.
4. Nielsen, J., Johansen, C.L., Jacobsen, M., Krabben, P. and Villadsen, J. (1995). Pellet formation and fragmentation in submerged cultures of Penicillium chrysogenum and its relation to penicillin production. Biotechnology Progress, 11: 93-98.
5. Márquez-Rocha, F.J., Guillén, G.K., Sünchez, J.E. and Vázquez-Duhalt, R. (1999). Growth characteristics of Pleurotus ostreatus in bioreactors. Biotechnology Techniques, 13: 29-32.
6. Kelly, S., Grimm, L.H., Jonas, R., Hempel, D.C. and Krull, R. (2006). Investigations of the morphogenesis of filamentous microorganisms. Engineering in Life Sciences, 6: 475-480.
7. Gehrig, I., Bart, H.J., Anke, T. and Germerdonk, R. (1998). Influence of morphology and rheology on the production characteristics of the basidiomycete Cyathus striatus. Biotechnology and Bioengineering, 59: 525-533.
8. Hwang, H.J., Kim, S.W., Xu, C.P., Choi, J.W. and Yun, J.W. (2004). Morphological and rheological properties of the three different species of basidiomycetes Phellinus in submerged cultures. Journal of Applied Microbiology, 96: 1296-1305.
9. Kim, H.M., Kim, S.W., Hwang, H.J., Park, M.K., Mahmoud, Y.A.G., Choi, J.W. and Yun, J.W. (2006). Influence of agitation intensity and aeration rate on production of antioxidative exopolysaccharides from submerged mycelial culture of Ganoderma resinaceum. Journal of Microbiology and Biotechnology, 16: 1240-1247.
10. Defren, K. (1993). Untersuchung der Auswirkungen von Rührertyp und Rührergröfle auf das Fermentation sverhalten des Pilzes Cyathus striatus. VDI-Fortschrittsbericht Nr. 91, Reihe 17, VDI-Verlag, Düsseldorf, Germany.
11. Kilaru, S., Hoegger, P.J., Majcherczyk, A., Burns, C., Shishido, K., Bailey, A., Foster, G.D. and Kües, U. (2006). Expression of laccase gene lcc1 in Coprinopsis cinerea under control of various basidiomycetous promoters. Applied Microbiology and Biotechnology, 71: 200-210.
12. Kjalke, M., Andersen, M.B., Schneider, P., Christensen, B., Schulein, M. and Welinder, K.G. (1992). Comparison of structure and activities of peroxidases from Coprinus cinereus, Coprinus macrorhizus and Arthromyces ramosus. Biochimica and Biophysica Acta, 1120: 248-256.
13. Papagianni, M. (2004). Fungal morphology and metabolite production in submerged mycelial processes. Biotechnology Advances, 22: 189-259.
14. Kües, U. (2000). Life history and developmental processes in the basidiomycete Coprinus cinereus. Microbiology and Molecular Biology Reviews, 64: 316-353.
15. Binninger, D.M., Skrzynia, C., Pukkila, P.J. and Casselton, L.A. (1987). DNA-mediated tranformation of the basidiomycete Coprinus cinereus. EMBO Journal, 6: 835-840.
16. Granado, J.D., Kertesz-Chaloupková, K., Aebi, M. and Kües, U. (1997). Restriction enzyme-mediated DNA integration in Coprinus cinereus. Molecular & General Genetics, 256: 28-36.
17. Ogawa, K., Yamazaki, T., Kajiwara, S., Watanabe, A., Asada, Y. and Shishido, K. (1998). Molecular breeding of the basidiomycete Coprinus cinereus strains with high lignin-decolorization and - degradation activities using novel heterologous protein expression vectors. Applied Microbiology and Biotechnology, 49: 285-289.
18. Kikuchi, M., Ogawa, K., Yamazaki, T., Kajiwara, S., Sugio, A., Nakamura, S. and Shishido, K. (1999). Secretional expression of a Bacillus subtilis xylanase gene in the Basidiomycete Coprinus cinereus. FEMS Microbiology Letters, 178: 277-282.
19. Kilaru, S. (2006). Identification of fungal multi-copper oxidase gene families: Overexpression and characterization of Coprinopsis cinerea laccases for applications in biotechnology. PhD thesis, Georg-August-University of Göttingen, Göttingen, Germany.
20. Papagianni, M. (2006). Quantification of the fractal nature of mycelial aggregation in Aspergillus niger submerged cultures. Microbial Cell Factories, 5:5, doi:10.1186/1475-2859-5-5.
21. Kelly, S. (2006). Fluiddynamischer Einfluss auf die Morphogenese von Biopellets filamentöser Pilze. FIT-Verlag, Paderborn, Germany.
22. Cox, P.W. and Thomas, C.R. (1992). Classification and measurement of fungal pellets by automated image-analysis. Biotechnology and Bioengineering, 39: 945-952.
23. Paul, G.C. and Thomas, C.R. (1998). Characterisation of mycelial morphology using image analysis. Advances in Biochemical Engineering Biotechnology, 60: 1-59.