Macrolide resistance in microorganisms at antimicrobial-free swine farms

Applied and Environmental Microbiology

Volumn 75, Issue 18, 2009, Pages 5814-5820

  Zhou, Zhi ^a,b   Raskin, Lutgarde ^a,c   Zilles, Julie L ^a  

^a University of Illinois at Urbana Champaign   (United States)

^b CAROLLO ENGINEERS   (United States)

^c UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIMICROBIAL RESISTANCES; CULTURE-BASED METHODS; FECAL STREPTOCOCCI; FLUORESCENCE IN SITU HYBRIDIZATION; INDICATOR ORGANISMS; LINCOSAMIDE; LOW LEVEL; MACROLIDE RESISTANCE; MACROLIDES; STREPTOGRAMINS; SWINE FARM;

AIRCRAFT LANDING SYSTEMS; ALKYLATION; ANTIBIOTICS; FLUORESCENCE MICROSCOPY; MANURES; METHYLATION; MICROORGANISMS;

FARMS;

LINCOSAMIDE; MACROLIDE; MIKAMYCIN B; RIBOSOME RNA;

ANTIMICROBIAL ACTIVITY; DRUG RESISTANCE; FLUORESCENCE; MANURE; MICROORGANISM; PIG;

ANTIBIOTIC RESISTANCE; ARTICLE; CLOSTRIDIA; FLUORESCENCE IN SITU HYBRIDIZATION; MANURE; MICROBIAL COMMUNITY; NONHUMAN; PIG FARMING; PREVALENCE; RNA METHYLATION; STREPTOCOCCUS;

ANIMALS; ANTI-BACTERIAL AGENTS; DRUG RESISTANCE, BACTERIAL; DRUG UTILIZATION; FECES; GRAM-POSITIVE BACTERIA; IN SITU HYBRIDIZATION, FLUORESCENCE; LINCOSAMIDES; MACROLIDES; METHYLATION; RNA, RIBOSOMAL; STREPTOGRAMIN B; SWINE; TETRACYCLINES;

CLOSTRIDIA; SUIDAE;

EID: 70149111747     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00977-09     Document Type: Article

References (41)

1. Aarestrup, F. M. 2000. Characterization of glycopeptide-resistant Enterococcus faecium (GRE) from broilers and pigs in Denmark: genetic evidence that persistence of GRE in pig herds is associated with coselection by resistance to macrolides. J. Clin. Microbiol. 38:2774-2777.
2. Akwar, H. T., C. Poppe, J. Wilson, R. Reid-Smith, M. Dyck, J. Waddington, D. Shang, and S. A. McEwen. 2008. Associations of antimicrobial uses with antimicrobial resistance of fecal Escherichia coli from pigs on 47 farrow-to-finish farms in Ontario and British Columbia. Can. J. Vet. Res. 72:202-210.
3. Amann, R. I., L. Krumholz, and D. A. Stahl. 1990. Fluorescent- oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172:762-770.
4. American Public Health Association, American Water Works Association, and Water Environment Federation. 1998. Standard methods for the examination of water and wastewater, 20th ed. American Public Health Association, American Water Works Association, and Water Environment Federation, Washington, DC.
5. Angenent, L. T., M. Mau, U. George, J. A. Zahn, and L. Raskin. 2008. Effect of the presence of the antimicrobial tylosin in swine waste on anaerobic treatment. Water Res. 42:2377-2384.
6. Arthur, M., C. Molinas, C. Mabilat, and P. Courvalin. 1990. Detection of erythromycin resistance by the polymerase chain reaction using primers in conserved regions of erm rRNA methylase genes. Antimicrob. Agents Chemother. 34:2024-2026. (Pubitemid 20290308)
7. Cotta, M. A., T. R. Whitehead, and R. L. Zeltwanger. 2003. Isolation, characterization and comparison of bacteria from swine faeces and manure storage pits. Environ. Microbiol. 5:737-745.
8. Daims, H., A. Brühl, R. Amann, K.-H. Schleifer, and M. Wagner. 1999. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22:434-444.
9. Danish Integrated Antimicrobial Resistance Monitoring and Research Programme. 2006. Use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals, foods and humans in Denmark. http://www.danmap.org/pdfFiles/Danmap-2006.pdf.
10. de los Reyes, F. L., W. Ritter, and L. Raskin. 1997. Group-specific small-subunit rRNA hybridization probes to characterize filamentous foaming in activated sludge systems. Appl. Environ. Microbiol. 63:1107-1117.
11. Douthwaite, S., J. Jalava, and L. Jakobsen. 2005. Ketolide resistance in Streptococcus pyogenes correlates with the degree of rRNA dimethylation by Erm. Mol. Microbiol. 58:613-622.
12. Gebreyes, W. A., S. Thakur, and W. E. M. Morrow. 2006. Comparison of prevalence, antimicrobial resistance, and occurrence of multidrug-resistant Salmonella in antimicrobial-free and conventional pig production. J. Food Prot. 69:743-748.
13. Gellin, G., B. E. Langlois, K. A. Dawson, and D. K. Aaron. 1989. Antibiotic resistance of gram-negative enteric bacteria from pigs in three herds with different histories of antibiotic exposure. Appl. Environ. Microbiol. 55:2287-2292.
14. Ghosh, S., and T. M. LaPara. 2007. The effects of subtherapeutic antibiotic use in farm animals on the proliferation and persistence of antibiotic resistance among soil bacteria. ISME J. 1:191-203. (Pubitemid 47145290)
15. Hammerum, A. M., O. E. Heuer, H.-D. Emborg, L. Bagger-Skjot, V. F. Jensen, A.-M. Rogues, R. L. Skov, Y. Agerso, C. T. Brandt, A. M. Seyfarth, A. Muller, K. Hovgaard, J. Ajufo, F. Bager, F. M. Aarestrup, N. Frimodt-Moller, H. C. Wegener, and D. L. Monnet. 2007. Danish integrated antimicrobial resistance monitoring and research program. Emerg. Infect. Dis. 13:1632-1639.
16. Harada, K., T. Asai, A. Kojima, K. Ishihara, and T. Takahashi. 2006. Role of coresistance in the development of resistance to chloramphenicol in Escherichia coli isolated from sick cattle and pigs. Am. J. Vet. Res. 67:230-235.
17. Hirsch, A., and E. Grinsted. 1954. Methods for the growth and enumeration of anaerobic sporeformers from cheese, with observations on the effect of nisin. J. Dairy Res. 21:101-110.
18. Jindal, A., S. Kocherginskaya, A. Mehboob, M. Robert, R. I. Mackie, L. Raskin, and J. L. Zilles. 2006. Antimicrobial use and resistance in swine waste treatment systems. Appl. Environ. Microbiol. 72:7813-7820.
19. Kozak, G. K., P. Boerlin, N. Janecko, R. Reid-Smith, and C. Jardine. 2009. Antimicrobial resistance in Escherichia coli isolates from swine and wild small mammals in the proximity of swine farms and in natural environments in Ontario, Canada. Appl. Environ. Microbiol. 75:559-566.
20. Leclercq, R. 2002. Mechanisms of resistance to macrolides and lincosamides: nature of the resistance elements and their clinical implications. Clin. Infect. Dis. 34:482-492.
21. Leung, K., and E. Topp. 2001. Bacterial community dynamics in liquid swine manure during storage: molecular analysis using DGGE/PCR of 16S rDNA. FEMS Microbiol. Ecol. 38:169-177.
22. Levy, S. B., and B. Marshall. 2004. Antibacterial resistance worldwide: causes, challenges and responses. Nat. Med. 10:S122-S129.
23. Loy, A., F. Maixner, M. Wagner, and M. Horn. 2007. probeBase - an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Res. 35:D800-D804. (Pubitemid 46056312)
24. Manz, W., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1992. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15:593-600.
25. Mathew, A. G., M. A. Beckmann, and A. M. Saxton. 2001. A comparison of antibiotic resistance in bacteria isolated from swine herds in which antibiotics were used or excluded. J. Swine Health Prod. 9:125-129.
26. Neef, A. 1997. Anwendung der in situ Einzelzell-Identifizierung von Bakterien zur Populationsanalyse in komplexen mikrobiellen Biozönosen. Technische Universität München, Munich, Germany.
27. Occhialini, A., M. Urdaci, F. Doucet-Populaire, C. M. Bébéar, H. Lamouliatte, and F. Mégraud. 1997. Macrolide resistance in Helicobacter pylori: rapid detection of point mutations and assays of macrolide binding to ribosomes. Antimicrob. Agents Chemother. 41:2724-2728.
28. Roberts, M. C., J. Sutcliffe, P. Courvalin, L. B. Jensen, J. Rood, and H. Seppala. 1999. Nomenclature for macrolide and macrolide-lincosamide- streptogramin B resistance determinants. Antimicrob. Agents Chemother. 43:2823-2830.
29. Snell-Castro, R., J. J. Godon, J. P. Delgenes, and P. Dabert. 2005. Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis. FEMS Microbiol. Ecol. 52:229-242.
30. Snow, D. D., D. A. Cassada, S. J. Monson, J. Zhu, and R. F. Spalding. 2003. Tetracycline and macrolide antibiotics: trace analysis in water and wastewater using solid phase extraction and liquid chromatography-tandem mass spectrometry. In I. Ferrer and E. M. Thurman (ed.), Liquid chromatography/mass spectrometry, MS/MS, and time-of-flight MS analysis of emerging contaminants. American Chemical Society, Washington, DC.
31. Sutcliffe, J., T. Grebe, A. Tait-Kamradt, and L. Wondrack. 1996. Detection of erythromycin-resistant determinants by PCR. Antimicrob. Agents Chemother. 40:2562-2566.
32. Szczebara, F., L. Dhaenens, P. Vincent, and M. O. Husson. 1997. Evaluation of rapid molecular methods for detection of clarithromycin resistance in Helicobacter pylori. Eur. J. Clin. Microbiol. Infect. Dis. 16:162-164. (Pubitemid 27135970)
33. Travis, R. M., C. L. Gyles, R. Reid-Smith, C. Poppe, S. A. McEwen, R. Friendship, N. Janecko, and P. Boerlin. 2006. Chloramphenicol and kanamycin resistance among porcine Escherichia coli in Ontario. J. Antimicrob. Chemother. 58:173-177.
34. Trebesius, K. H., K. Panthel, S. Strobel, K. Vogt, G. Faller, T. Kirchner, M. Kist, J. Heesemann, and R. Haas. 2000. Rapid and specific detection of Helicobacter pylori macrolide resistance in gastric tissue by fluorescent in situ hybridisation. Gut 46:608-614.
35. Vester, B., and S. Douthwaite. 2001. Macrolide resistance conferred by base substitutions in 23S rRNA. Antimicrob. Agents Chemother. 45:1-12.
36. Weber, S., S. Stubner, and R. Conrad. 2001. Bacterial populations colonizing and degrading rice straw in anoxic paddy soil. Appl. Environ. Microbiol. 67:1318-1327.
37. Weisblum, B. 1995. Erythromycin resistance by ribosome modification. Antimicrob. Agents Chemother. 39:577-585.
38. Whitehead, T. R., and M. A. Cotta. 2001. Characterization of microbial populations in swine feces and waste handling pits by 16S rDNA sequence analysis. Anaerobe 7:181-187.
39. Zhou, Z., M. N. Pons, L. Raskin, and J. L. Zilles. 2007. Automated image analysis for quantitative fluorescence in situ hybridization with environmental samples. Appl. Environ. Microbiol. 73:2956-2962.
40. Zhu, J., D. D. Snow, D. A. Cassada, S. J. Monson, and R. F. Spalding. 2001. Analysis of oxytetracycline, tetracycline, and chlortetracycline in water using solid-phase extraction and liquid chromatography-tandem mass spectrometry. J. Chromatogr. A 928:177-186. (Pubitemid 32822786)
41. Zilles, J., T. Shimada, A. Jindal, M. Robert, and L. Raskin. 2005. Presence of macrolide-lincosamide-streptogramin B and tetracycline antimicrobials in swine waste treatment processes and amended soil. Water Environ. Res. 77:57-62.