Developmental validation of short tandem repeat reagent kit for forensic DNA profiling of canine biological material

Croatian Medical Journal

Volumn 50, Issue 3, 2009, Pages 268-285

  Dayton, Melody ^a   Koskinen, Mikko T ^b   Tom, Bradley K ^c   Mattila, Anna Maria ^b   Johnston, Eric ^d   Halverson, Joy ^e   Fantin, Dennis ^d   Denise, Sue ^d   Budowle, Bruce ^f   Smith, David Glenn ^b,c,g   Kanthaswamy, Sree ^b,c,g  

^a Jan Bashinski DNA Laboratory   (United States)

^b Finnzymes Oy   (Finland)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d MMI Genomics   (United States)

^e QuestGen Forensics   (United States)

^f UNIVERSITY OF NORTH TEXAS   (United States)

^g UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMATERIAL; DNA; MICROSATELLITE DNA;

ARTICLE; CHROMOSOME ANALYSIS; CONTROLLED STUDY; DNA FINGERPRINTING; DOG; FORENSIC GENETICS; GENE AMPLIFICATION; GENETIC ANALYSIS; NONHUMAN; SHORT TANDEM REPEAT; ANALYTICAL EQUIPMENT; ANIMAL; GENETICS; METHODOLOGY; POLYMERASE CHAIN REACTION; VALIDATION STUDY;

ANIMALS; DNA; DNA FINGERPRINTING; DOGS; FORENSIC GENETICS; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; REAGENT KITS, DIAGNOSTIC;

EID: 70149106555     PISSN: 03539504     EISSN: 13328166     Source Type: Journal    
DOI: 10.3325/cmj.2009.50.268     Document Type: Article

References (33)

1. Savolainen P, Zhang Y P, Luo J, Lundeberg J, Leitner T. Genetic evidence for an East Asian origin of domestic dogs. Science. 2002; 298: 1610-3. Medline:12446907 doi:10.1126/science.1073906 (Pubitemid 35387197)
2. Brewer DJ, Terence C, Phillips A. Dogs in antiquity. Anubis to Cerberus: The origins of the domestic dog. Warminster (UK): Aris & Phillips; 2002.
3. U. S. pet ownership & demographics sourcebook. Schaumburg (Il): Center for Information Management, American Veterinary Medical Association, 1997.
4. Halverson J, Basten CA. PCR multiplex and database for forensic DNA identification of dogs. J Forensic Sci. 2005; 50: 352-63. Medline:15813546 doi:10.1520/JFS2004207
5. Shutler GG, Gagnon P, Verret G, Kalyn H, Korkosh S, Johnston E, et al. Removal of a PCR inhibitor and resolution of DNA STR types in mixed human-canine stains from a five year old case. J Forensic Sci. 1999; 44: 623-6. Medline:10408119
6. Eichmann C, Berger B, Reinhold M, Lutz M, Parson W. Caninespecific STR typing of saliva traces on dog bite wounds. Int J legal Med. 2004; 118: 337-42. Medline:15480731 doi:10.1007/s00414-004-0479-7 (Pubitemid 40022259)
7. Francisco LV, Langston AA, Mellersh CS, Neal CL, Ostrander EA. A class of highly polymorphic tetranucleotide repeats for canine genetic mapping. Mamm Genome. 1996; 7: 359-62. Medline:8661717 doi:10.1007/s003359900104
8. Hellmann AP, Rohleder U, Eichmann C, Pfeiffer I, Parson W, Schleenbecker U. A proposal for standardization in forensic canine DNA typing: allele nomenclature of six canine-specific STR loci. J Forensic Sci. 2006; 51: 274-81. Medline:16566760 doi:10.1111/j.1556-4029.2006.00049.x (Pubitemid 43382068)
9. Halverson J, Dvorak J, Stevenson T. inventors. Metamorphix, Inc, assignee. Microsatellite sequences for canine genotyping. US patent 5, 874, 217. February 23, 1999.
10. Neff MW, Broman KW, Mellersh CS, Ray K, Acland GM, Aguirre GD, et al. A second-generation genetic linkage map of the domestic dog, Canis familiaris. Genetics. 1999; 151: 803-20. Medline:9927471
11. Shibuya H, Collins BK, Huang TH, Johnson GS. A polymorphic (AGGAAT) n tandem repeat in an intron of the canine von Willebrand factor gene. Anim Genet. 1994; 25: 122. Medline:8010530
12. Mellersh CS, Langston AA, Acland GM, Fleming MA, Ray K, Wiegand NA, et al. A linkage map of the canine genome. Genomics. 1997; 46: 326-36. Medline:9441735 doi:10.1006/geno. 1997.5098
13. Eichmann C, Berger B, Steinlechner M, Parson W. Estimating the probability of identity in a random dog population using 15 highly polymorphic canine STR markers. Forensic Sci Int. 2005; 151: 37-44. Medline:15935941 doi:10.1016/j.forsciint.2004.07.002 (Pubitemid 40797658)
14. Koskinen MT, Bredbacka P. A convenient and efficient microsatellite-based assay for resolving parentages in dogs. Anim Genet. 1999; 30: 148-9. Medline:10376306 doi:10.1046/j.1365-2052.1999.00438.x (Pubitemid 29273006)
15. Collins PJ, Hennessy LK, Leibelt CS, Roby RK, Reeder DJ, Foxall PA. Developmental validation of a single-tube amplification of the 13 CODIS STR loci, D2S1338, D19S433, and amelogenin: the AmpFℓSTR Identifiler PCR Amplification Kit. J Forensic Sci. 2004; 49: 1265-77. Medline:15568700 doi:10.1520/JFS2002195
16. Meiboom M, Murua Escobar H, Winkler S, Nolte I, Bullerdiek J. Molecular characterization and mapping of the canine KRAB zinc finger gene ZNF331. Anim Genet. 2004; 35: 262-3. Medline:15147412 doi:10.1111/j.1365-2052.2004.01146.x (Pubitemid 38751745)
17. Menotti-Raymond MA, David VA, Wachter LL, Butler JM, O'Brien SJ. An STR forensic typing system for genetic individualization of domestic cat (Felis catus) samples. J Forensic Sci. 2005; 50: 1061-70. Medline:16225210 doi:10.1520/JFS2004317
18. Kanthaswamy S, Tom BK, Mattila AM, Johnston E, Dayton M, Halverson J, et al. A Canine STR Kit and Population Database for Use in Forensic Casework. J Forensic Sci. Forthcoming 2009.
19. Hudlow WR, Date Chong M, Swango KL, Timken MD, Buoncristiani MR. A quadruplex real-time qPCR assay for the simultaneous assessment of total human DNA, human male DNA, DNA degradation and the presence of PCR inhibitors in forensic samples: A diagnostic tool for STR typing. Forensic Sci Int Genet. 2008; 2: 108-25. Medline:19083806 doi:10.1016/j.fsigen. 2007.09.001
20. Wang Y, Prosen DE, Mei L, Sullivan JC, Finney M, Vander Horn PB. A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro. Nucleic Acids Res. 2004; 32: 1197-207. Medline:14973201 doi:10.1093/nar/gkh271 (Pubitemid 38864677)
21. Phusion Hot Start High-Fidelity DNA Polymerase, New England Biolabs, Finnzymes, Version 1.2 September 2006. Available from: http://www.finnzymes.com/ pdf/phusion-hs-datasheet-f540sl-1-5-low.pdf. Accessed: May 19, 2009.
22. Nord K, Gunneriusson E, Ringdahl J, Stahl S, Uhlen M, Nygren PA. Binding proteins selected from combinatorial libraries of an alpha-helical bacterial receptor domain. Binding proteins selected from combinatorial libraries of an alpha-helical bacterial receptor domain. Nat Biotechnol. 1997; 15: 772-7. Medline:9255793 doi:10.1038/nbt0897-772
23. Wikman M, Stefen AC, Gunneriusson E, Tolmachev V, Adams GP, Carlsson J, et al. Selection and characterization of HER2/neubinding affibody ligands. Protein Eng Des Sel. 2004; 17: 455-62. Medline:15208403 doi:10.1093/protein/ gzh053 (Pubitemid 39294720)
24. ® 310 Genetic Analyzer. Forensic Science Communiction. 2003; 5.
25. Amos W, Hoffman JI, Frodsham A, Zhang L, Best S, Hill A V S. Automated binning of microsatellite alleles: problems and solutions. Mol Ecol Notes. 2007; 7: 10-4. doi:10.1111/j.1471-8286.2006.01560.x (Pubitemid 46046571)
26. Tom BK, Koskinen MT, Dayton MR, Mattila AM, Johnston E, Fantin D, et al. Development of a nomenclature system for a canine STR multiplex reagent kit. Forthcoming J Forensic Sci. 2009.
27. Butler J. Forensic DNA typing: biology & technology behind STR markers. San Diego (CA): Academic Press; 2005.
28. Leibelt C, Budowle B, Collins P, Daoudi Y, Moretti T, Nunn G, et al. Identification of a D8S1179 primer binding site mutation and the validation of a primer designed to recover null alleles. Forensic Sci Int. 2003; 133: 220-7. Medline:12787655 doi:10.1016/S0379-0738 (03) 00035-5
29. Rosenblum BB, Oaks F, Menchen S, Johnson B. Improved singlestrand DNA sizing accuracy in capillary electrophoresis. Nucleic Acids Res. 1997; 25: 3925-9. Medline:9380518 doi:10.1093/nar/25.19.3925 (Pubitemid 27420503)
30. Primmer CR, Moller A P, Ellegren H. A wide-range survey of crossspecies microsatellite amplification in birds. Mol Ecol. 1997; 6: 101. Medline:9004524
31. Brauner P, Reshef A, Gorski A. DNA profiling of trace evidence - mitigating evidence in a dog biting case. J Forensic Sci. 2001; 46: 1232-4. Medline:11569571
32. Lu DJ, Sun HY, Chen LX. Genotype reliability of short tandem repeats typing from minute DNA [in Chinese]. Fa Yi Xue Za Zhi. 2003; 19: 151-3. Medline:13677317
33. Budowle B, Hobson DL, Smerick JB, Smith J A L. Low copy number - consideration and caution. In: Twelfth International Symposium on Human Identifcation 2001, Promega Corporation, Madison, Wisconsin, 2001. Available from: http://www.promega.com/geneticidproc/ussymp12proc/contents/budowle.pdf. Accessed: May 18, 2009.