Sensitive and rapid identification of Vibrio vulnificus by loop-mediated isothermal amplification

Microbiological Research

Volumn 164, Issue 5, 2009, Pages 514-521

  Ren, Chun Hua ^a   Hu, Chao Qun ^a   Luo, Peng ^a   Wang, Qing Bai ^a  

^a SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

Author keywords

Identification; LAMP; Vibrio vulnificus

Indexed keywords

AGAROSE GEL; AMPLIFICATION PRODUCTS; AQUATIC ANIMALS; BACTERIAL PATHOGENS; GENE SEQUENCES; HEAT BLOCKS; IDENTIFICATION; IDENTIFICATION METHOD; LAMP; RAPID IDENTIFICATION; SYBR GREEN I; VIBRIO VULNIFICUS; VISUAL INSPECTION;

ANIMALS; AQUACULTURE; ELECTROPHORESIS; VISUAL COMMUNICATION;

AMPLIFICATION;

BACTERIAL PROTEIN; PERFORIN; PRIMER DNA;

AMPLIFICATION; AQUATIC ORGANISM; BACTERIUM; BIOASSAY; COST-BENEFIT ANALYSIS; GENE EXPRESSION; HEALTH RISK; PATHOGEN; POLYMERASE CHAIN REACTION; VISUAL ANALYSIS;

ARTICLE; ECONOMICS; EVALUATION; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; NUCLEIC ACID AMPLIFICATION; NUCLEOTIDE SEQUENCE; SENSITIVITY AND SPECIFICITY; VIBRIO VULNIFICUS;

BACTERIAL PROTEINS; BASE SEQUENCE; DNA PRIMERS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PERFORIN; SENSITIVITY AND SPECIFICITY; VIBRIO VULNIFICUS;

ANIMALIA; BACTERIA (MICROORGANISMS); VIBRIO VULNIFICUS;

EID: 69949116914     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micres.2008.05.002     Document Type: Article

References (37)

1. Brauns L.A., Hudson M.C., and Oliver J.D. Use of the polymerase chain reaction in detection of culturable and nonculturable Vibrio vulnificus cells. Appl Environ Microbiol 57 (1991) 2651-2655
2. Chen Y.C., Su J.H., Chang W.T., and Chang J.K. Specific primers for rapid and sensitive identification of Vibrio vulnificus. Chia-Nan Annu Bull 31 (2005) 19-27
3. Coleman S.S., Melanson D.M., Biosca E.G., and Oliver J.D. Detection of Vibrio vulnificus biotypes 1 and 2 in eels and oysters by PCR amplification. Appl Environ Microbiol 62 (1996) 1378-1382
4. Dalsgaard I., Høi L., Siebeling R.J., and Dalsgaard A. Indole-positive Vibrio vulnificus isolated from disease outbreaks on a Danish eel farm. Dis Aquat Org 35 (1998) 187-194
5. El-Matbouli M., and Soliman H. Rapid diagnosis of Tetracapsuloides bryosalmonae, the causative agent of proliferative kidney disease (PKD) in salmonid fish by a novel DNA amplification method, loop-mediated isothermal amplification (LAMP). Parasitol Res 96 (2005) 277-284
6. Endo S., Komori T., Ricci G., Sano A., Yokoyama K., Ohori A., et al. Detection of gp43 of Paracoccidioides brasiliensis by the loopmediated isothermal amplification (LAMP) method. FEMS Microbiol Lett 234 (2004) 93-97
7. Farmer J.J. Revival of the name Vibrio vulnificus. Int J Syst Bacteriol 30 (1980) 656
8. FDA. Bacteriological analytical manual of food and drug administration. 7th ed. (2001), AOAC International, Arlington, VA p. 111-140
9. Fukuda S., Takao S., Kuwayama M., Shimazu Y., and Miyazaki K. Rapid detection of norovirus from fecal specimens by real-time reverse transcription-loop-mediated isothermal amplification assay. J Clin Microbiol 44 (2006) 1376-1381
10. Gadkar V., and Rillig M.C. Evaluation of loop-mediated isothermal amplification (LAMP) to rapidly detect arbuscular mycorrhizal fungi. Soil Biol Biochem 40 (2008) 540-543
11. Gordon K.V., Vickery M.C., DePaola A., Staley C., and Harwood V.J. Real-time PCR assays for quantification and differentiation of Vibrio vulnificus strains in oysters and water. Appl Environ Microbiol 74 (2008) 1704-1709
12. Harwood V.J., Gandhi J.P., and Wright A.C. Methods for isolation and confirmation of Vibrio vulnificus from oysters and environmental sources: a review. J Microbiol Methods 59 (2004) 301-316
13. Hill W.E., Keasler S.P., Trucksess M.W., Feng P., and Kaysner C.A. Lampel KAPolymerase chain reaction identification of Vibrio vulnificus in artificially contaminated oysters. Appl Environ Microbiol 57 (1991) 707-711
14. Hong T.C., Mai Q.L., Cuong D.V., Parida M., Minekawa H., Notomi T., et al. Development and evaluation of a novel loop-mediated isothermal amplification of method for rapid detection of severe acute respiratory syndrome coronavirus. J Clin Microbiol 42 (2004) 1956-1961
15. Horisaka T., Taniguchi T., Honda E., Yokomizo Y., and Hayashidani H. Sensitive and specific detection of Yersinia pseudotuberculosis by loop-mediated isothermal amplification. J Clin Microbiol 42 (2004) 5349-5352
16. Iwamoto T., Sonobe T., and Hayashi K. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J Clin Microbiol 41 (2003) 2616-2622
17. Kamachi K., Toyoizumi-Ajisaka T., Toda K., Soeung S.C., Sarath S., Nareth Y., et al. Development and evaluation of a loop-mediated isothermal amplification method for rapid diagnosis of Bordetella pertussis infection. J Clin Microbiol 44 (2006) 1899-1902
18. Karlsen F., Steen H., and Nesland J. SYBR Green I DNA staining increases the detection sensitivity of viruses by polymerase chain reaction. J Virol Methods 55 (1995) 153-156
19. Kuhara T., Yoshikawa T., Ihira M., Watanabe D., Tamada Y., Katano H., et al. Rapid detection of human herpesvirus 8 DNA using loop-mediated isothermal amplification. J Virol Methods 144 (2007) 79-85
20. Kumar H.S., Parvathi A., Karunasagar I., and Karunasagar I. A gyrB-based PCR for the detection of Vibrio vulnificus and its application for direct detection of this pathogen in oyster enrichment broths. Int J Food Microbiol 111 (2006) 216-220
21. Lee J.Y., Bang Y.B., Rhee J.H., and Choi S.H. Two stage nested PCR effectiveness for direct detection of Vibrio vulnificus in natural samples. J Food Sci 64 (1999) 157-162
22. Mohran Z.S., Arthur R.R., Oyofo B.A., Peruski L.F., Wasfy M.O., Ismail T.F., et al. Differentiation of Campylobacter isolates on the basis of sensitivity to boiling in water as measured by PCR-detectable DNA. Appl Environ Microbiol 64 (1998) 363-365
23. Mori Y., Nagamine K., Tomita N., and Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem Biophys Res Commun 289 (2001) 150-154
24. Njiru Z.K., Mikosza A.S.J., Matovu E., Enyaru J.C.K., Ouma J.O., Kibona S.N., et al. African trypanosomiasis: sensitive and rapid detection of the sub-genus Trypanozoon by loop-mediated isothermal amplification (LAMP) of parasite DNA. Int J Parasitol 38 (2008) 589-599
25. Notomi T., Okayama H., Masubuchi H., Yonekawa T., Watanabe K., Amino N., et al. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28 (2000) e63
26. Oliver J.D., Warner R.A., and Cleland D.R. Distribution of Vibrio vulnificus and other lactose fermenting Vibrios in the marine environment. Appl Environ Microbiol 45 (1983) 985-998
27. Prida M., Posadas G., Inoue S., Hasebe F., and Morita K. Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus. J Clin Microbiol 42 (2004) 257-263
28. Soliman H., and El-Matbouli M. Reverse transcription loop-mediated isothermal amplification (RT-LAMP) for rapid detection of viral hemorrhagic septicaemia virus (VHS). Vet Microbiol 114 (2006) 205-213
29. Strom M.S., and Paranjpye R.N. Epidemiology and pathogenesis of Vibrio vulnijkus. Microbes Infect 2 (2000) 177-188
30. Sun Z.F., Hu C.Q., Ren C.H., and Shen Q. Sensitive and rapid detection of infectious hypodermal and hematopoietic necrosis virus (IHHNV) in shrimps by loop-mediated isothermal amplification. J Virol Methods 131 (2006) 41-46
31. Wang S., and Levin R.E. Rapid quantification of Vibrio vulnificus in clams (Protochaca staminea) using real-time PCR. Food Microbiol 23 (2006) 757-761
32. Wang L., Shi L., Alam M.J., Geng Y.H., and Li L. Specific and rapid detection of foodborne Salmonella by loop-mediated isothermal amplification method. Food Res Int 41 (2008) 69-74
33. Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 63 (1997) 3741-3751
34. Yamamoto K., Wright A.C., Kaper J.B., and Morris J.G. The cytolysin gene of Vibrio vulnificus: sequence and relationship to the Vibrio cholerae E1 Tor hemolysin gene. Infect Immun 58 (1990) 2706-2709
35. Yano A., Ishimaru R., and Hujikata R. Rapid and sensitive detection of heat-labile I and heat-stable I enterotoxin genes of enterotoxigenic Escherichia coli by loop-mediated isothermal amplification. J Microbiol Methods 68 (2007) 414-420
36. Yeh H.Y., Shoemaker C.A., and Klesius P.H. Evaluation of a loop-mediated isothermal amplification method for rapid detection of channel catfish Ictalurus punctatus important bacterial pathogen Edwardsiella ictaluri. J Microbiol Methods 63 (2005) 36-44
37. Yoshikawa T., Ihira M., Akimoto S., Usui C., Miyake F., Suga S., et al. Detection of human herpesvirus 7 DNA by loop-mediated isothermal amplification. J Clin Microbiol 42 (2004) 1348-1352