Rapid detection of human herpesvirus 8 DNA using loop-mediated isothermal amplification

Journal of Virological Methods

Volumn 144, Issue 1-2, 2007, Pages 79-85

  Kuhara, Tomoe ^a   Yoshikawa, Tetsushi ^b   Ihira, Masaru ^b   Watanabe, Daisuke ^a   Tamada, Yasuhiko ^a   Katano, Harutaka ^c   Asano, Yoshizo ^b   Matsumoto, Yoshinari ^a  

^a AICHI MEDICAL UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b FUJITA HEALTH UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

Author keywords

HHV 8; LAMP; Real time PCR

Indexed keywords

VIRUS DNA;

ANALYTIC METHOD; ANIMAL CELL; ARTICLE; CONTROLLED STUDY; CORRELATION COEFFICIENT; DILUTION; DNA EXTRACTION; DNA SEQUENCE; GENE AMPLIFICATION; HUMAN; HUMAN HERPESVIRUS 8; HUMAN TISSUE; KAPOSI SARCOMA; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; LYMPHOMA; NONHUMAN; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RELIABILITY; VIRUS DETECTION;

DNA, VIRAL; HERPESVIRUS 8, HUMAN; HUMANS; POLYMERASE CHAIN REACTION; SARCOMA, KAPOSI; SENSITIVITY AND SPECIFICITY;

HUMAN HERPESVIRUS 8;

EID: 34547104866     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2007.03.021     Document Type: Article

References (35)

1. Boshoff C., and Chang Y. Kaposi's sarcoma-associated herpesvirus: a new DNA tumor virus. Annu. Rev. Med. 52 (2001) 453-470
2. Broccolo F., Locatelli G., Sarmati L., Piergiovanni S., Veglia F., Andreoni M., Butto S., Ensoli B., Lusso P., and Malnati S. Calibrated real-time PCR assay for quantitation of human herpesvirus 8 in biological fluids. J. Clin. Microbiol. 40 (2002) 4652-4658
3. Broccolo F., Bossolasco S., Careddu A.M., Tambussi G., Lazzarin A., and Cinque P. Detection of DNA of lymphotropic herpesviruses in plasma of human immunodeficiency virus-infected patients: frequency and clinical significance. Clin. Diagn. Lab. Immunol. 9 (2002) 1222-1228
4. Burdick A.E., Carmichael C., Rady P.L., Tyring S.K., and Badiavas E. Resolution of Kaposi's sarcoma associated with undetectable level of human herpesvirus 8 DNA in a patient with AIDS after protease inhibitor therapy. J. Am. Acad. Dermatol. 37 (1997) 648-649
5. Cesarman E., Chang Y., Moore P.S., Said J.W., and Knowles D.M. Kaposi's sarcoma-associated herpesvirus-like DNA sequences in AIDS-related body-cavity-based lymphomas. N. Engl. J. Med. 332 (1995) 1186-1191
6. Chandran B., Smith M.S., Koelle D.M., Corey L., Horvat R., and Goldstein E. Reactivations of human sera with human herpesvirus-8 infected BCBL-1 cells and identification of HHV-8 specific proteins and glycoproteins and the encoding cDNAs. Virology 243 (1998) 208-217
7. Dedicoat M., and Newton R. Review of the distribution of Kaposi's sarcoma-associated herpesvirus (KSHV) in Africa in relation to the incidence of Kaposi's sarcoma. Br. J. Cancer 88 (2003) 1-3
8. De Paoli P. Human herpesvirus 8: an update. Microb. Infect. 6 (2004) 328-335
9. Dukers N.H., and Rezza G. Human herpesvirus 8 epidemiology: what we do and do not know. AIDS 17 (2003) 1717-1730
10. Duprez R., Kassa-Kelembho E., Plancoulaine S., Briere J., Fossi M., Kobangue L., Minsart P., Huerre M., and Gessain A. Human herpesvirus 8 serological markers and viral load in patients with AIDS-associated Kaposi's sarcoma in Central African Republic. J. Clin. Microbiol. 43 (2005) 4840-4843
11. Enomoto Y., Yoshikawa T., Ihira M., Akimoto S., Miyake F., Usui C., Suga S., Suzuki K., Kawana T., Nishiyama Y., and Asano Y. Rapid diagnosis of herpes simplex virus infection by a loop-mediated isothermal amplification method. J. Clin. Microbiol. 43 (2005) 951-955
12. Enosawa M., Kageyama S., Sawaki K., Watanabe K., Notomi T., Onoe S., Mori Y., and Yokomizo Y. Use of loop-mediated isothermal amplification of the IS900 sequence for rapid detection of cultured Mycobacterium avium subdp. Paratuberculosis. J. Clin. Microbiol. 41 (2003) 4359-4365
13. Grandadam M., Dupin N., Calvez V., Gorin I., Blum L., Kernbaum S., Sicard D., Buisson Y., Agut H., Escande J.P., and Huraux J.M. Exacerbations of clinical symptoms in human immunodeficiency virus type 1-infected patients with multicentric Castleman's disease are associated with a high increase in Kaposi's sarcoma herpesvirus DNA load in peripheral blood mononuclear cells. J. Infect. Dis. 175 (1997) 1198-1201
14. Hong T.C., Mai Q.L., Cuong D.V., Parida M., Minekawa H., Notomi T., Hasebe F., and Morita K. Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus. J. Clin. Microbiol. 42 (2004) 1956-1961
15. Ihira M., Yoshikawa T., Enomoto Y., Akimoto S., Ohashi M., Suga S., Nishimura N., Ozaki T., Nishiyama Y., Notomi T., Ohta Y., and Asano Y. Rapid diagnosis of human herpesvirus 6 infection by a novel DNA amplification method, loop-mediated isothermal amplification. J. Clin. Microbiol. 42 (2004) 140-145
16. Ihira M., Akimoto S., Miyake F., Fujita A., Sugata K., Suga S., Ohashi M., Nishimura N., Ozaki T., Asano Y., and Yoshikawa T. Direct detection of human herpesvirus 6 DNA in serum by the loop-mediated isothermal amplification method. J. Clin. Virol. 39 (2007) 22-26
17. Iwamoto T., Sonobe T., and Hayashi K. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosiscomplex, M. avium, and M. intracellulare in sputum samples. J. Clin. Microbiol. 41 (2003) 2616-2622
18. Kimura H., Ihira M., Enomoto Y., Kawada J., Ito Y., Morishima T., Yoshikawa T., and Asano Y. Rapid detection of herpes simplex virus DNA in cerebrospinal fluid: comparison between loop-mediated isothermal amplification and real-time PCR. Med. Microbiol. Immunol. (Berl.) 194 (2005) 181-185
19. Kuboki N., Inoue N., Sakurai T., Di Cello F., Grab D.J., Suzuki H., Sugimoto C., and Igarashi I. Loop-mediated isothermal amplification for detection of African trypoanosomes. J. Clin. Microbiol. 41 (2003) 5517-5524
20. Lallemand F., Desire N., Rozenbaum W., Nicolas J.C., and Marechal V. Quantitative analysis of Human herpesvirus 8 viral load using a real-time PCR assay. J. Clin. Microbiol. 38 (2000) 1404-1408
21. Martinelli C., Zazzi M., Ambu S., Bartolozzi D., Corsi P., and Leoncini F. Complete regression of AIDS-related Kaposi's sarcoma-associated human herpesvirus-8 during therapy with indinavir. AIDS 12 (1998) 1717-1719
22. Mori Y., Nagamine K., Tomita N., and Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem. Biophys. Res. Commun. 289 (2001) 150-154
23. Mori Y., Kitao M., Tomita N., and Notomi T. Real-time turbidimetry of LAMP reaction for quantifying template DNA. J. Biochem. Biophys. Meth. 59 (2004) 145-157
24. Nagamine K., Hase T., and Notomi T. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell Probes 16 (2002) 223-229
25. Notomi T., Okayama H., Masubuchi H., Yoneyama T., Watanabe K., Amino N., and Hzse T. Loop mediated isothermal amplification of DNA. Nucleic Acids Res. 28 (2000) e63
26. Okamoto S., Yoshikawa T., Ihira M., Suzuki K., Shimokata K., Nishiyama Y., and Asano Y. Rapid detection of varicella-zoster virus infection by a loop-mediated isothermal amplification method. J. Med. Virol. 74 (2004) 677-682
27. Parida M., Posadas G., Inoue S., Hasebe F., and Morita K. Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus. J. Clin. Microbiol. 42 (2004) 257-263
28. Poon L.L., Wong B.W., Chan K.H., Ng S.S., Yuen K.Y., Guan Y., and Peiris J.S. Evaluation of real-time reverse transcriptase PCR and real-time loop-mediated amplification assays for severe acute respiratory syndrome coronavirus detection. J. Clin. Microbiol. 43 (2005) 3457-3459
29. Schatz O.P., Monini R., Bugarini F., Neipel T.F., Schulz M., Andreoni P., Erb M., Eggers J., Haas S., Butto N., Lukwiya J.R., Bogner S., Yaguboglu J., Sheldon L., Sarmati F.D., Goebel R., Hintermaier G., Enders N., Regamey M., Wernli M., Sturzl G., Rezza, and Ensoli R. Kaposi's sarcoma-associated herpesvirus serology in Europe and Uganda: multicentric study with multiple and novel assays. J. Med. Virol. 65 (2001) 123-132
30. Soulier J., Grollet L., Oksenhendler E., Cazals-Hatem D., Babinet P., d'Agay M.F., Clauvel J.P., Raphael M., Degos L., and Sigaux F. Kaposi's sarcoma-associated herpesvirus-like DNA sequences in multicentric Castleman's disease. Blood 86 (1995) 1276-1280
31. Spira T.J.L., Lam S.X., Dollard Y.X., Meng C.P., Pau J.B., Black D., Burns B., Cooper M., Hamid J., Huong K., Kite-Powell P., and Pellett E. Comparison of serologic assays and PCR for diagnosis of human herpesvirus 8 infection. J. Clin. Microbiol. 38 (2000) 2174-2180
32. Sugiyama H., Yoshikawa T., Ihira M., Enomoto Y., Kawana T., and Asano Y. Comparison of loop-mediated isothermal amplification, real-time PCR, and virus isolation for the detection of herpes simplex virus in genital lesions. J. Med. Virol. 75 (2005) 583-587
33. Suzuki R., Yoshikawa T., Ihira M., Enomoto Y., Inagaki S., Matsumoto K., Kato K., Kudo K., Kojima S., and Asano Y. Development of the loop-mediated isothermal amplification method for rapid detection of cytomegalovirus DNA. J. Virol. Meth. 132 (2006) 216-221
34. Tedeschi R., Enbom M., Bidoli E., Linde A., De Paoli P., and Dillner J. Viral load of human herpesvirus 8 in peripheral blood of human immunodeficiency virus-infected patients with Kaposi's sarcoma. J. Clin. Microbiol. 39 (2001) 4269-4273
35. Yoshikawa T., Ihira M., Akimoto S., Usui C., Miyake F., Suga S., Enomoto Y., Suzuki R., Nishiyama Y., and Asano Y. Rapid diagnosis of human herpesvirus 7 infection by a novel DNA amplification method, Loop-mediated isothermal amplification. J. Clin. Microbiol. 42 (2004) 1348-1352