메뉴 건너뛰기




Volumn 78, Issue 4, 2009, Pages 978-986

Molecular dynamics simulations of a cyclic-DP-240 amylose fragment in a periodic cell: Glass transition temperature and water diffusion

Author keywords

c DP 240; Glass transition temperature; Molecular dynamics; Self diffusion coefficient

Indexed keywords

AMORPHOUS CELL; AMYLOSE CHAINS; C-DP-240; EXPERIMENTAL VALUES; FORCE FIELDS; GLASS TRANSITION TEMPERATURE; GLUCOSE RESIDUES; MOLECULAR CONFORMATION; MOLECULAR DYNAMICS SIMULATIONS; PERIODIC CELL; PICOSECONDS; SELF DIFFUSION COEFFICIENT; SELF-DIFFUSION COEFFICIENTS; WATER DIFFUSION; WATER MOLECULE;

EID: 69949103573     PISSN: 01448617     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.carbpol.2009.07.034     Document Type: Article
Times cited : (24)

References (36)
  • 1
    • 69949095479 scopus 로고    scopus 로고
    • Accelrys Corporation, 9685 Scranton Road, San Diego, CA 92121-3752.
    • Accelrys Corporation, 9685 Scranton Road, San Diego, CA 92121-3752.
  • 4
    • 0030949143 scopus 로고    scopus 로고
    • Glass transition in aqueous solutions of glucose. Molecular dynamics simulation
    • Caffarena E.R., and Grigera J.R. Glass transition in aqueous solutions of glucose. Molecular dynamics simulation. Carbohydrate Research 300 (1997) 51-57
    • (1997) Carbohydrate Research , vol.300 , pp. 51-57
    • Caffarena, E.R.1    Grigera, J.R.2
  • 5
    • 0032972121 scopus 로고    scopus 로고
    • Hydration of glucose in the rubbery and glassy states studied by molecular dynamics simulation
    • Caffarena E.R., and Grigera J.R. Hydration of glucose in the rubbery and glassy states studied by molecular dynamics simulation. Carbohydrate Research 315 (1999) 63-69
    • (1999) Carbohydrate Research , vol.315 , pp. 63-69
    • Caffarena, E.R.1    Grigera, J.R.2
  • 6
    • 0034825494 scopus 로고    scopus 로고
    • Molecular simulation of sucrose solutions near the glass transition temperature
    • Ekdawi-Sever N., Conrad P.B., and de Pablo J.J. Molecular simulation of sucrose solutions near the glass transition temperature. Journal of Physical Chemistry A105 (2001) 734-742
    • (2001) Journal of Physical Chemistry , vol.A105 , pp. 734-742
    • Ekdawi-Sever, N.1    Conrad, P.B.2    de Pablo, J.J.3
  • 7
    • 0001021650 scopus 로고
    • Thermodynamic and transport properties of carbohydrates and their monophosphates: The pentoses and hexoses
    • Goldberg R.N., and Tewari Y.B. Thermodynamic and transport properties of carbohydrates and their monophosphates: The pentoses and hexoses. Journal of Physical Chemical Reference Data 18 (1989) 809-880
    • (1989) Journal of Physical Chemical Reference Data , vol.18 , pp. 809-880
    • Goldberg, R.N.1    Tewari, Y.B.2
  • 10
    • 0000972708 scopus 로고
    • Conformations of erythritol and l-threitol in aqueous solution in relation to sweetness properties; A molecular dynamics simulation
    • Howard E.I., and Grigera J.R. Conformations of erythritol and l-threitol in aqueous solution in relation to sweetness properties; A molecular dynamics simulation. Journal of Chemical Society, Faraday Transactions 88 (1992) 437-441
    • (1992) Journal of Chemical Society, Faraday Transactions , vol.88 , pp. 437-441
    • Howard, E.I.1    Grigera, J.R.2
  • 11
    • 12044252945 scopus 로고
    • Picosecond dynamics of simple monosaccharides as probed by NMR and molecular dynamics simulations
    • Hajduk P.J., Horita D.A., and Lerner L.E. Picosecond dynamics of simple monosaccharides as probed by NMR and molecular dynamics simulations. Journal of the American Chemical Society 115 (1993) 9196-9201
    • (1993) Journal of the American Chemical Society , vol.115 , pp. 9196-9201
    • Hajduk, P.J.1    Horita, D.A.2    Lerner, L.E.3
  • 13
    • 16344387145 scopus 로고    scopus 로고
    • Carbohydrate polymers in amorphous states: An integrated thermodynamic and nanostructural investigation
    • Kilburn D., Claude J., Schweizer T., Alam A., and Ubbink J. Carbohydrate polymers in amorphous states: An integrated thermodynamic and nanostructural investigation. Biomacromolecules 6 (2005) 864-879
    • (2005) Biomacromolecules , vol.6 , pp. 864-879
    • Kilburn, D.1    Claude, J.2    Schweizer, T.3    Alam, A.4    Ubbink, J.5
  • 14
    • 0001342810 scopus 로고
    • Water organization and molecular mobility in maize starch investigated by two-dimensional solid-state NMR
    • Kullik A.S., Chris de Costa J.R., and Haverkamp J. Water organization and molecular mobility in maize starch investigated by two-dimensional solid-state NMR. Journal of Agricultural and Food Chemistry 42 (1994) 2803-2807
    • (1994) Journal of Agricultural and Food Chemistry , vol.42 , pp. 2803-2807
    • Kullik, A.S.1    Chris de Costa, J.R.2    Haverkamp, J.3
  • 15
    • 20844440074 scopus 로고    scopus 로고
    • A computational study of hydration, solution structure, and dynamics in dilute carbohydrate solutions
    • Lee S.L., and Debenedetti P.G. A computational study of hydration, solution structure, and dynamics in dilute carbohydrate solutions. Journal of Chemical Physics 122 (2005) 204511-204519
    • (2005) Journal of Chemical Physics , vol.122 , pp. 204511-204519
    • Lee, S.L.1    Debenedetti, P.G.2
  • 16
    • 0000699247 scopus 로고    scopus 로고
    • Dynamical behavior of carbohydrates as studied by carbon-13 and proton nuclear spin relaxation
    • Maler L., Widmalm G., and Kowalewski J. Dynamical behavior of carbohydrates as studied by carbon-13 and proton nuclear spin relaxation. Journal of Physical Chemistry 100 (1996) 17103-17110
    • (1996) Journal of Physical Chemistry , vol.100 , pp. 17103-17110
    • Maler, L.1    Widmalm, G.2    Kowalewski, J.3
  • 17
    • 0042936805 scopus 로고
    • Self diffusion in normal and heavy water in the range 1-45°
    • Mills R. Self diffusion in normal and heavy water in the range 1-45°. Journal of Physical Chemistry 77 (1973) 685-688
    • (1973) Journal of Physical Chemistry , vol.77 , pp. 685-688
    • Mills, R.1
  • 18
    • 0034674529 scopus 로고    scopus 로고
    • Computational studies on carbohydrates: In vacuo studies using a revised AMBER force field, AMB99C, designed for α-(1 → 4) linkages
    • Momany F.A., and Willett J.L. Computational studies on carbohydrates: In vacuo studies using a revised AMBER force field, AMB99C, designed for α-(1 → 4) linkages. Carbohydr Research 326 (2000) 194-209
    • (2000) Carbohydr Research , vol.326 , pp. 194-209
    • Momany, F.A.1    Willett, J.L.2
  • 19
    • 0034674685 scopus 로고    scopus 로고
    • Computational studies on carbohydrates: Solvation studies on maltose and cyclomaltooligosaccharides (cyclodextrins) using a DFT/ab initio-derived empirical force field, AMB99C
    • Momany F.A., and Willett J.L. Computational studies on carbohydrates: Solvation studies on maltose and cyclomaltooligosaccharides (cyclodextrins) using a DFT/ab initio-derived empirical force field, AMB99C. Carbohydrate Research 326 (2000) 210-226
    • (2000) Carbohydrate Research , vol.326 , pp. 210-226
    • Momany, F.A.1    Willett, J.L.2
  • 20
    • 0000497293 scopus 로고    scopus 로고
    • Computational studies on carbohydrates I. Density functional ab initio geometry optimization on maltose conformations
    • Momany F.A., and Willett J.L. Computational studies on carbohydrates I. Density functional ab initio geometry optimization on maltose conformations. Journal of Computational Chemistry 21 (2000) 1-16
    • (2000) Journal of Computational Chemistry , vol.21 , pp. 1-16
    • Momany, F.A.1    Willett, J.L.2
  • 21
    • 0036165779 scopus 로고    scopus 로고
    • Molecular dynamics calculations on amylose fragments. I. Glass transition temperatures of maltodecaose at 1%, 5%, 10%, and 15.8% hydration
    • Momany F.A., and Willett J.L. Molecular dynamics calculations on amylose fragments. I. Glass transition temperatures of maltodecaose at 1%, 5%, 10%, and 15.8% hydration. Biopolymers 63 9 (2002) 9-110
    • (2002) Biopolymers , vol.63 , Issue.9 , pp. 9-110
    • Momany, F.A.1    Willett, J.L.2
  • 22
    • 36249009833 scopus 로고    scopus 로고
    • DFT study of α-maltose: Influence of hydroxyl orientations on the glycosidic bond
    • Momany F.A., Schnupf U., Willett J.L., and Bosma W.B. DFT study of α-maltose: Influence of hydroxyl orientations on the glycosidic bond. Structural Chemistry 18 (2007) 611-632
    • (2007) Structural Chemistry , vol.18 , pp. 611-632
    • Momany, F.A.1    Schnupf, U.2    Willett, J.L.3    Bosma, W.B.4
  • 23
    • 0035526001 scopus 로고    scopus 로고
    • Translational diffusion of dilute aqueous solutions of sugars as probed by NMR and hydrodynamic theory
    • Monteiro C., and Herve du Penhoat C. Translational diffusion of dilute aqueous solutions of sugars as probed by NMR and hydrodynamic theory. Journal of Physical Chemistry A105 (2001) 9827-9833
    • (2001) Journal of Physical Chemistry , vol.A105 , pp. 9827-9833
    • Monteiro, C.1    Herve du Penhoat, C.2
  • 24
    • 0024649214 scopus 로고
    • Effect of water as a diluent on the glass transition behaviour of malto-oligosaccharides, amylose and amylopectin
    • Orford P.D., Parker R., Ring S.G., and Smith A.C. Effect of water as a diluent on the glass transition behaviour of malto-oligosaccharides, amylose and amylopectin. International Journal Biological Macromolecules 11 (1989) 91-96
    • (1989) International Journal Biological Macromolecules , vol.11 , pp. 91-96
    • Orford, P.D.1    Parker, R.2    Ring, S.G.3    Smith, A.C.4
  • 25
    • 0029152960 scopus 로고
    • Diffusion in maltose-water mixtures at temperatures close to the glass transition
    • Parker R., and Ring S.G. Diffusion in maltose-water mixtures at temperatures close to the glass transition. Carbohydrate Research 273 (1995) 147-155
    • (1995) Carbohydrate Research , vol.273 , pp. 147-155
    • Parker, R.1    Ring, S.G.2
  • 27
    • 0000011127 scopus 로고    scopus 로고
    • Structure and dynamics of concentrated, amorphous carbohydrate-water systems by molecular dynamics simulation
    • Roberts C.J., and Debenedetti P.G. Structure and dynamics of concentrated, amorphous carbohydrate-water systems by molecular dynamics simulation. Journal of Physical Chemistry 103 (1999) 7308-7318
    • (1999) Journal of Physical Chemistry , vol.103 , pp. 7308-7318
    • Roberts, C.J.1    Debenedetti, P.G.2
  • 28
    • 0000729134 scopus 로고    scopus 로고
    • Conformation of amylose in aqueous solution: Small-angle X-ray scattering measurements and simulations
    • Shimada J., Kaneko H., Takada T., Kitamura S., and Kajiwara K. Conformation of amylose in aqueous solution: Small-angle X-ray scattering measurements and simulations. Journal of Physical Chemistry B 104 (2000) 2136-2137
    • (2000) Journal of Physical Chemistry B , vol.104 , pp. 2136-2137
    • Shimada, J.1    Kaneko, H.2    Takada, T.3    Kitamura, S.4    Kajiwara, K.5
  • 29
    • 0034561602 scopus 로고    scopus 로고
    • Modification of maize starch by thermal processing in glacial acetic acid
    • Shogren R. Modification of maize starch by thermal processing in glacial acetic acid. Carbohydrate Polymers 43 (2000) 309-315
    • (2000) Carbohydrate Polymers , vol.43 , pp. 309-315
    • Shogren, R.1
  • 30
    • 34250659310 scopus 로고    scopus 로고
    • The glass transition temperatures of amorphous trehalose-water mixtures and the mobility of water: An experimental and in silico study
    • Simperler A., Kornherr A., Chopra R., Jones W., Motherwell W.D.S., and Zifferer G. The glass transition temperatures of amorphous trehalose-water mixtures and the mobility of water: An experimental and in silico study. Carbohydrate Research 342 (2007) 1470-1479
    • (2007) Carbohydrate Research , vol.342 , pp. 1470-1479
    • Simperler, A.1    Kornherr, A.2    Chopra, R.3    Jones, W.4    Motherwell, W.D.S.5    Zifferer, G.6
  • 32
    • 0034563666 scopus 로고    scopus 로고
    • The distribution of carbohydrates in native starch granules-a multinuclear NMR study
    • Tang H.-R., Godward J., and Hills B. The distribution of carbohydrates in native starch granules-a multinuclear NMR study. Carbohydrate Polymers 43 (2000) 375-387
    • (2000) Carbohydrate Polymers , vol.43 , pp. 375-387
    • Tang, H.-R.1    Godward, J.2    Hills, B.3
  • 33
    • 0000427958 scopus 로고
    • Structure of amorphous starch. 1. An atomistic model and X-ray scattering study
    • Trommsdorff U., and Tomka I. Structure of amorphous starch. 1. An atomistic model and X-ray scattering study. Macromolecules 28 (1995) 6128
    • (1995) Macromolecules , vol.28 , pp. 6128
    • Trommsdorff, U.1    Tomka, I.2
  • 34
    • 0000427959 scopus 로고
    • Structure of amorphous starch. 2. Molecular interactions with water
    • Trommsdorff U., and Tomka I. Structure of amorphous starch. 2. Molecular interactions with water. Macromolecules 28 613 (1995) 8-6150
    • (1995) Macromolecules , vol.28 , Issue.613 , pp. 8-6150
    • Trommsdorff, U.1    Tomka, I.2
  • 35
    • 0030821638 scopus 로고    scopus 로고
    • Water diffusion in glasses of carbohydrates
    • Tromp R.H., Parker R., and Ring S.G. Water diffusion in glasses of carbohydrates. Carbohydrate Research 303 (1997) 199-205
    • (1997) Carbohydrate Research , vol.303 , pp. 199-205
    • Tromp, R.H.1    Parker, R.2    Ring, S.G.3
  • 36
    • 27744478761 scopus 로고    scopus 로고
    • Comparison of the glass transition temperature and fragility parameter of isomalto-olygomer predicted by molecular dynamics simulations with those measured by differential scanning calorimetry
    • Yoshioka S., and Aso Y. Comparison of the glass transition temperature and fragility parameter of isomalto-olygomer predicted by molecular dynamics simulations with those measured by differential scanning calorimetry. Chemical Pharmacology Bulletin 53 (2005) 1443-1445
    • (2005) Chemical Pharmacology Bulletin , vol.53 , pp. 1443-1445
    • Yoshioka, S.1    Aso, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.