-
1
-
-
33846064113
-
NCBI GEO: Mining tens of millions of expression profiles - Database and tools update
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M and Edgar R (2007) NCBI GEO: Mining tens of millions of expression profiles - Database and tools update. Nucleic Acids Res 35:D760.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Edgar, R.10
-
2
-
-
33746741041
-
Microarray image analysis: Background estimation using quantile and morphological filters
-
Bengtsson A and Bengtsson H (2006) Microarray image analysis: Background estimation using quantile and morphological filters. BMC Bioinform 7:96.
-
(2006)
BMC Bioinform
, vol.7
, pp. 96
-
-
Bengtsson, A.1
Bengtsson, H.2
-
3
-
-
34249855440
-
Codelink: An R package for analysis of GE healthcare gene expression bioarrays
-
Diez D, Alvarez R and Dopazo A (2007) Codelink: An R package for analysis of GE healthcare gene expression bioarrays. Bioinformatics 23:1168-1169.
-
(2007)
Bioinformatics
, vol.23
, pp. 1168-1169
-
-
Diez, D.1
Alvarez, R.2
Dopazo, A.3
-
4
-
-
34547830811
-
Libaffy: Software for processing Affymetrix(R) GeneChip(R) data
-
Eschrich SA and Hoerter AM (2007) Libaffy: Software for processing Affymetrix(R) GeneChip(R) data. Bioinformatics 23:1562-1564.
-
(2007)
Bioinformatics
, vol.23
, pp. 1562-1564
-
-
Eschrich, S.A.1
Hoerter, A.M.2
-
5
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, et al. (2004) Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol 5:R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
-
6
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U and Speed TP (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4:249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
7
-
-
0036852098
-
Gene expression analysis using oligonucleotide arrays produced by maskless photolithography
-
Nuwaysir EF, Huang W, Albert TF, Singh J, Nuwaysir K, Pitas A, Richmond T, Gorski T, Berg JP, Ballin J, et al. (2002) Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Res 12:1749-1755.
-
(2002)
Genome Res
, vol.12
, pp. 1749-1755
-
-
Nuwaysir, E.F.1
Huang, W.2
Albert, T.F.3
Singh, J.4
Nuwaysir, K.5
Pitas, A.6
Richmond, T.7
Gorski, T.8
Berg, J.P.9
Ballin, J.10
-
8
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush (2002) Microarray data normalization and transformation. Nat Genet 32:496-501.
-
(2002)
Nat Genet
, vol.32
, pp. 496-501
-
-
Quackenbush1
-
11
-
-
47549090982
-
Differential gene expression between the biotrophic-like and saprotrophic mycelia of the witches' broom pathogen Moniliophthora perniciosa
-
Rincones J, Scarpari LM, Carazzolle MF, Mondego JMC, Formighieri EF, Barau JG, Costa GGL, Carraro DM, Brentani HP, Vilas-Boas LA, et al. (2008) Differential gene expression between the biotrophic-like and saprotrophic mycelia of the witches' broom pathogen Moniliophthora perniciosa. Molecular Plant-Microbe Interactions 21:891.
-
(2008)
Molecular Plant-Microbe Interactions
, vol.21
, pp. 891
-
-
Rincones, J.1
Scarpari, L.M.2
Carazzolle, M.F.3
Mondego, J.M.C.4
Formighieri, E.F.5
Barau, J.G.6
Costa, G.G.L.7
Carraro, D.M.8
Brentani, H.P.9
Vilas-Boas, L.A.10
-
13
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M, Shalon D, Davis RW and Brown PO (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
14
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Smyth GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3:3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
15
-
-
30344482268
-
Comparison of normalization methods for CodeLink Bioarray data
-
Wu W, Dave N, Tseng GC, Richards T, Xing EP and Kaminski N (2005) Comparison of normalization methods for CodeLink Bioarray data. BMC Bioinform 6:309.
-
(2005)
BMC Bioinform
, vol.6
, pp. 309
-
-
Wu, W.1
Dave, N.2
Tseng, G.C.3
Richards, T.4
Xing, E.P.5
Kaminski, N.6
-
16
-
-
30044444274
-
WebArray: An online platform for microarray data analysis
-
Xia X, McClelland M and Wang Y (2005) WebArray: An online platform for microarray data analysis. BMC Bioinform 6:306.
-
(2005)
BMC Bioinform
, vol.6
, pp. 306
-
-
Xia, X.1
McClelland, M.2
Wang, Y.3
-
17
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J and Speed TP (2002) Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30:e15.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
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