Effect of organic phosphorus and nitrogen enrichment of mesotrophic lake water on dynamics and diversity of planktonic microbial communities - DNA and protein case studies (mesocosm experiments)

Polish Journal of Microbiology

Volumn 58, Issue 2, 2009, Pages 163-180

  Chróst, Ryszard J ^a   Adamczewski, Tomasz ^a   Kalinowska, Krystyna ^b   Skowrońska, Agnieszka ^c  

^a UNIVERSITY OF WARSAW   (Poland)

^b CENTRE FOR ECOLOGICAL RESEARCH   (Poland)

^c UNIVERSITY OF WARMIA AND MAZURY IN OLSZTYN   (Poland)

Author keywords

Lake water; Microbial diversity; Organic P and N sources

Indexed keywords

BOVINE SERUM ALBUMIN; CARBON; DNA; LAKE WATER; NITROGEN; ORGANOPHOSPHORUS COMPOUND;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GROWTH; BACTERIOPLANKTON; BETAPROTEOBACTERIA; CONTROLLED STUDY; GAMMAPROTEOBACTERIA; MESOCOSM; MICROBIAL BIOMASS; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MOLECULAR INTERACTION; NONHUMAN; PHOTOSYNTHESIS; PLANKTON; TAXONOMY;

BACTERIA; BIOMASS; DNA; FOOD CHAIN; FRESH WATER; IN SITU HYBRIDIZATION, FLUORESCENCE; NITROGEN; PHOSPHORUS; PHYTOPLANKTON; TIME FACTORS;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BOVINAE; CILIOPHORA; GAMMAPROTEOBACTERIA; PROTISTA;

EID: 69549083447     PISSN: 17331331     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (67)

1. Adamczewski T., R.J. Chróst, K. Kalinowska and A. Skowrońska. 2009. Relationships between bacteria and heterotrophic nanoflagellates in lake water examined by means of different techniques controlling grazing pressure. Aquat. Microb. Ecol. (in press).
2. Amann R.I., B.J. Binder, R.J. Olson, S.W. Chisholm, R. Devereux and D.A. Stahl. 1990. Combination of 16S-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56: 1919-1925.
3. Arndt H. 1993. Rotifers as predators on components of the microbial food web (bacteria, heterotrophic flagellates, ciliates) - a review. Hydrobiologia 255/256: 231-246. (Pubitemid 24412607)
4. Arrar E.J. and G.B. Collins. 1997. Method 445.0. In vitro determination of chlorophyll a and phenophytin a in marine and freshwater algae by fluorescence. National Exposure Research Laboratory. Office of Research and Development. U.S. Environmental Protection Agency.
5. Auer B. and H. Arndt. 2001. Taxonomic composition and biomass of heterotrophic flagellates in relation to lake trophy and season. Freshwat. Biol. 46: 959-972.
6. Bennett M.E. and J.E. Hobbie. 1972. The uptake of glucose by Chlamydomonas sp. J. Phycol. 8: 392-398.
7. Bennett S.J., R.W. Sanders and K.G. Porter. 1990. Heterotrophic, autotrophic, and mixotrophic nanoflagellates: Seasonal abundances and bacterivory in a eutrophic lake. Limnol. Oceanogr. 35: 1821-1832.
8. Børsheim K.Y. and G. Bratbak. 1987. Cell volume to cell carbon conversion factors for a bacterivorous Monas sp. enriched from sea water. Mar. Ecol. Prog. Ser. 36: 171-175.
9. Carrias J.F., C. Amblard and G. Bourdier. 1996. Protistan bacterivory in an oligomesotrophic lake: importance of attached ciliates and flagellates. Microb. Ecol. 31: 249-268.
10. th Symposium on Aquatic Microbial Ecology, Taormina, Italy.
11. th Symposium for European Freshwater Sciences, Kraków, Poland.
12. Chróst R.J. and M.A. Faust. 1999. Consequences of solar radiation on bacterial secondary production and growth rates in subtropical coastal water (Atlantic Coral Reef off Belize, Central America). Aquat. Microb. Ecol. 20: 39-48.
13. Chróst R.J. and H. Rai. 1994. Bacterial secondary production, pp. 92-117. In: Overbeck J. and R.J. Chróst (eds). Microbial Ecology of Lake Pluâsee. Springer Verlag, New York.
14. Chróst R.J. and W. Siuda. 2006. Microbial production, utilization and enzymatic degradation of organic matter in the upper trophogenic water layer in the pelagial zone of lakes along the eutrophication gradient. Limnol. Oceanogr. 51: 749-762.
15. Chróst R.J., M. Koton and W. Siuda. 2000. Bacterial secondary production and bacterial biomass in four Mazurian Lakes of differing trophic status. Pol. J. Environ. Stud. 9: 255-266.
16. 3H]thymidine methods for estimating bacterial growth rates and production in lake water: re-examination and methodological comments. Acta Microbiol. Pol. 37: 95-112.
17. Chróst R.J., T. Adamczewski, K. Kalinowska and A. Skowrońska. 2009. Inorganic phosphorus and nitrogen modify composition and diversity of microbial communities in water of mesotrophic lake. Polish J. Microbiol. 58: 77-90.
18. Chróst R.J., U. Münster, H. Rai, D. Albrecht, K.P. Wetzel and J. Overbeck. 1989. Photosynthetic production and exoenzymatic degradation of organic matter in the euphotic zone of eutrophic lake. J. Plankton Res. 11: 223-242.
19. Corno G. and K. Jürgens. 2006. Direct and indirect effects of protest predation on population size structure of a bacterial strain with high phenotypic plasticity. Appl. Environ. Microbiol. 1: 78-86.
20. Cottrell M.T. and D.L. Kirchman. 2000. Natural assemblages of marine proteobacteria and member of the Cytophaga-Flavobacter cluster consuming low- and high-molecular weight dissolved organic matter. Appl. Environ. Microbiol. 66: 1692-1697.
21. Covert J.S. and M.A. Moran. 2001. Molecular characterization of estuarine bacterial communities using high-and-low molecular weight dissolved organic carbon. Aquat. Microb. Ecol. 25: 127-139.
22. del Giorgio P.A., J.M. Gasol, D. Vaque, P. Mura, S. Agusti and C.M. Duarte. 1996. Bacterioplankton community structure: protists control net production and the proportion of active bacteria in a coastal marine community. Limnol. Oceanogr. 41: 1169-1179.
23. Ferguson R.L. and W.G. Sunda. 1984. Utilization of amino acids by planktonic marine bacteria: Importance of clean technique and low substrate additions. Limol. Oceanogr. 29: 258-274.
24. Fisher M.M., J.L. Klug, G. Lauster, M. Newton and E.W. Triplett. 2000. Effects of resources and trophic interactions on freshwater bacterioplankton diversity. Microb. Ecol. 40: 125-138.
25. Flaten G.-A.F., T. Castberg, T. Tanaka and T.F. Thinstad. 2003. Interpretation of nutrient-enrichment bioassays by looking at subpopulations in a marine bacterial community. Aquat. Microb. Ecol. 33: 11-18.
26. Foissner W., H. Berger, H. Blatterer and F. Kohmann. 1991-1995. Taxonomische und ökologische Revision der Ciliaten des Saprobiensystems, Band I-IV. Bayer. Landesamt für Wasserwirtschaft, München.
27. Foissner W., H. Berger and J. Schaumburg. 1999. Identification and Ecology of Limnetic Plankton Ciliates. Bayer. Landesamt für Wasserwirtschaft, München.
28. Gonzales J.M., E.B. Sherr and B.F. Sherr. 1990. Size-selective grazing on bacteria by natural assemblages of estuarine flagellates and ciliates. Appl. Environ. Microbiol. 56: 583-589.
29. Hagström A., J.A. Ammerman, S. Henrichs and F. Azam. 1984. Bacterioplankton growth in seawater. 2. Organic matter utilization during steady-state growth in seawater cultures. Mar. Ecol. Prog. Ser. 18: 41-48.
30. Hahn M.W. and M.G. Höfle. 2001. Grazing of protozoa and its effect on populations of aquatic bacteria. FEMS Microbiol. Ecol. 35: 113-121.
31. Hollibaugh J.T. and F. Azam. 1983. Microbial degradation of dissolved proteins in seawater. Limnol. Oceanogr. 28: 1104-1116.
32. Hornák K., M. Masin, J. Jezbera, Y. Bettarel, J. Nedoma, T. Sime-Ngano and K. Šimek. 2005. Effects of decreased resource availability, protozoan grazing and viral impact on structure of bacterioplankton assemblage in a canyon-shaped reservoir FEMS Microbiol. Ecol. 52: 315-332. (Pubitemid 40523630)
33. Joint I., P. Henriksen, G.A. Fonnes, D. Bourne, T.F. Thingstad and B. Rieman. 2002. Competition for inorganic nutrients between phytoplankton and bacterioplankton in nutrient manipulated mesocosms. Aquat. Microb. Ecol. 29: 145-159.
34. Jørgensen N.O.G. and C.S. Jacobscn. 1996. Bacterial uptake and utilization of dissolved DANN. Aquat. Microb. Ecol. 11: 263-270.
35. Jürgens K., J. Pernthaler, S. Schalla and R. Amann. 1999. Morphological and compositional changes in planktonic bacterial community in response to enhanced protozoan grazing. Appl. Environ. Microbiol. 65: 1241-1250.
36. Jürgens K. and G. Stolpe. 1995. Seasonal dynamics of crustacean zooplankton, heterotrophic nanoflagellates and bacteria in a shallow, eutrophic lake. Freshwat. Biol. 33: 27-38.
37. Koton-Czarnecka M. and R.J. Chróst. 2003. Protozoans prefer large and metabolically active bacteria. Pol. J. Environ. Stud. 12: 325-334.
38. Kritzberg E.S., S. Langenheder and E.S. Lindström. 2006. Influence of dissolved organic matter source on lake bacterioplankton structure and function-implications for seasonal dynamics of community composition. FEMS Microbiol. Ecol. 56: 406-417.
39. Lebaron P., P. Servais, M. Troussellier, C. Courtics, G. Muyzer, L. Bernard, H. Schäfer, R. Pukall, E. Stackebrandt, T. Guindulain and J. Vives-Rego. 2001. Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in abundances, activity and composition. FEMS Microbiol. Ecol. 34: 255-266.
40. Lee S. and J.A. Fuhrman. 1987. Relationships between biovolume and biomass of naturally derived marine bacterioplankton. Appl. Environ. Microbiol. 53: 1298-1303.
41. Manz W., R. Amann, W. Ludwig, M. Wagner and K.H. Schleifer. 1992. Phylogenetic Oligonucleotide probes fort the major subclasses of Proteobacteria: Problems and solutions. Syst. Appl. Microbiol. 15: 593-600.
42. Manz W., R. Amann, M. Vancanneyt and K.-H. Schleifer. 1996. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum CytophagaFlavobacter-Bacteroides in the natural environment. Microbiology 140: 2849-2858.
43. Münster U. 1984. Distribution, dynamic and structure of free dissolved carbohydrates in the Plußsee, a North German eutrophic lake. Verh. Inter. Verein. Limnol. 22: 929-935.
44. nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
45. Münster U. and R.J. Chróst. 1990. Origin, composition and microbial utilization of dissolved organic matter, pp. 8-46. In: Overbeck J. and R.J. Chróst (eds). Aquatic Microbial Ecology - Biochemical and Molecular Approaches. Springer-Verlag, New York.
46. Neef A. 1997. Ph.D. Thesis. Anwendynng der in situ – Einzelzell-identifizierung von bakterien zur populationsanalyse in komplexen mikrobiellen biozonosen. Technische Universität München. Munich. Germany.
47. Olapade O.A. and L.G. Leff. 2005. Seasonal response of stream biofilm communities to dissolved organic matter and nutrient enrichments. Appl. Environ. Microbiol. 71: 2278-2287.
48. Paranjape M. 1980. Occurrence and significance of resting cysts in a hyaline tintinnid Helicostomella subulata (Ehre.) Jorgensen. J. Exp. Mar. Biol. Ecol. 48: 23-33.
49. Paul J.H., W.H. Jeffery and M.F. DeFlaun. 1987. Dynamics of extracellular DNA in the marine environment. Appl. Environ. Microbiol. 53: 170-179.
50. Pernthaler J., F.O. Glocombining double acute accentckner, W. Schonhuber and R. Amann. 2001. Fluorescence in situ hybridization with rRNA-targeted oligonucleotide probes. Methods in Microbiology 30: 207-226.
51. Pernthaler A., C.M. Prestom, J. Pernthaler, E.F. Delong and R. Amann. 2002. A comparison of fluorescently labeled oligonucleotide and polynucleotide probes for detection of pelagic marine bacteria and Arachaea. Appl. Environ. Microbiol. 68: 661-667.
52. Pernthaler J., B. Sattler, K. Šimek, A. Schwarzenbacher and R. Pssener. 1996. Top-down effects on the size-biomass distribution of a freshwater bacterioplankton community. Aquat. Microb. Ecol. 10: 255-263.
53. Pomeroy L.R. and W.J. Wiebe. 2001. Temperature and substrates as interactive limiting factors for marine heterotrophic bacteria. Aquat. Microb. Ecol. 23: 187-204.
54. Porter K.G. and Y.S. Feig. 1980. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25: 943-948.
55. Psenner R. 1993. Determination of size and morphology of aquatic bacteria by automated image analysis. pp. 339-345. In: Kemp P.F., B.F. Sherr, E.B. Sherr and J.J. Cole (eds). Handbook of Methods in Aquatic Microbial Ecology. Lewis Publ, Boca Raton, Fla.
56. Putt M. and D.K. Stoecker. 1989. An experimentally determined carbon: volume ratio for marine "oligotrichous" ciliates from estuarine and coastal waters. Limnol. Oceanogr. 34: 1097-1103.
57. Schumann R., U. Schiewer, U. Karoten and T. Rieling. 2003. Viability of bacteria from different aquatic habitats. II. Cellular fluorescent markers for membrane integrity and metabolic activity. Aquat. Microb. Ecol. 32: 137-150.
58. Schutter M. and R. Dick. 2001. Schifts in substrate utilization potential and structure of soil microbial communities in response to carbon substrates. Soil Biol. Biochem. 33: 1481-1491.
59. Sherr B.F. and E.B. Sherr. 1984. Role of heterotrophic protozoa in carbon and energy flow in aquatic environments. pp. 412-423. In: Klug M.J. and C.A. Reddy (eds). Current Perspectives in Microbial Ecology. American Society for Microbiology, Washington, D.C.
60. Šimek K., J. Bobková, M. Macek, J. Nedoma and R. Psenner. 1995. Ciliate grazing on picoplankton in eutrophic reservoir during summer phytoplankton maximum: a study at the species and community level. Limnol. Oceanogr. 40: 1077-1090.
61. Šimek K., J. Jezbera, K. Hornák, J. Vrba and J. Sedá. 2004. Role of diatom-attached choanoflagellates of the genus Salpingoeca as pelagic bacterivores. Aquat. Microb. Ecol. 36: 257-269.
62. Šimek K., K. Jürgens, J. Nedoma, M. Comerma and J. Armengol. 2000. Ecological role and bacterial grazing of Halteria spp.: small oligotrichs as dominant pelagic ciliate bacterivores. Aquat. Microb. Ecol. 22: 43-56.
63. Siuda W. and R.J. Chróst. 2001. Utilization of selected dissolved organic phosphorus compounds by bacteria in lake water under non-limiting orthophosphate conditions. Pol. J. Environ. Stud. 10: 475-483.
64. Siuda W., R.J. Chróst and H. Güde. 1998. Distribution and origin of dissolved DNA in lakes of different trophic states. Aquat. Microb. Ecol. 15: 89-96.
65. Wallner G., R. Amann and W. Beisker. 1993. Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14: 136-143. (Pubitemid 23042736)
66. Weinbauer M.G. and M.G. Höfle. 1998. Distribution and life strategies of two bacterial populations in eutrophic lake. Appl. Environ. Microbiol. 64: 3776-3783.
67. Williams P.M. 1986. Chemistry of dissolved and particulate phases in the water column. pp. 53-172. In: Eppley W. (ed). Plankton Dynamics of the Southern California Bight. Springer-Verlag, New York.