Pattern formation today

International Journal of Developmental Biology

Volumn 53, Issue 5-6, 2009, Pages 653-658

  Chuong, Cheng Ming ^a   Richardson, Michael K ^b  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^b LEIDEN UNIVERSITY   (Netherlands)

Author keywords

Development; Evo Devo; Evolution; Morphogenesis; Pattern formation; Systems biology

Indexed keywords

ANIMAL; BIOLOGICAL MODEL; DEVELOPMENTAL BIOLOGY; EVOLUTION; GALLIFORMES; GENE EXPRESSION REGULATION; GENETIC PROCEDURES; HUMAN; METHODOLOGY; MORPHOGENESIS; NOTE; PHYSIOLOGY; REGENERATION; STEM CELL; SYSTEMS BIOLOGY;

ANIMALS; BODY PATTERNING; DEVELOPMENTAL BIOLOGY; EVOLUTION; GALLIFORMES; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENETIC TECHNIQUES; HUMANS; MODELS, BIOLOGICAL; REGENERATION; STEM CELLS; SYSTEMS BIOLOGY;

EID: 69449086035     PISSN: 02146282     EISSN: None     Source Type: Journal    
DOI: 10.1387/ijdb.082594cc     Document Type: Review

References (47)

1. ABZHANOV, A., PROTAS, M., GRANT, B. R., GRANT, P. R., AND TABIN, C. J. (2004). Bmp4 and morphological variation of beaks in Darwin's finches. Science 305: 1462-1465.
2. BALL, P. (1999). The self-made tapestry: pattern formation in nature. Oxford University Press, New York.
3. BAKER, SCHNELL, MAINI, P.K. (2009). Waves and patterning in developmental biology: vertebrate segmentation and feather bud formation as case studies. Int. J. Dev. Biol. 53: 783-794. (doi: 10.1387/ijdb.072493rb).
4. BRITTIJN S.A., DUIVESTEIJN S.J., BITTER W., DE BRUIN J.D., CHAMPAGNE D., CUPPEN E., FLIK G., JANSSEN R., DE JONG I.M., ET AL. (2009). Zebrafish developmental patterning: new tools for medical research. Int. J. Dev. Biol. 53: 835-850. (doi: 10.1387/ijdb.082615sb)
5. BROCKES, J. P. AND KUMAR, A. (2005). Appendage regeneration in adult vertebrates and implications for regenerative medicine. Science 310: 1919-1923.
6. CHANG, C., WU, P., BAKER, R.E., MAINI, P.K., ALIBARDI, L., CHUONG, C.-M. (2009). Reptile scale paradigm: Evo-Devo, pattern formation and regeneration. Int. J. Dev. Biol. 53: 813-826. (doi: 10.1387/ijdb.072556cc)
7. CHEN, J.Y. (2009). The sudden appearance of diverse animal body plans during the Cambrian explosion. Int. J. Dev. Biol. 53: 733-751. (doi: 10.1387/ijdb.072513cj)
8. CHRISTLEY, S., ALBER, M.S, NEWMAN, S.A. (2007). Patterns of mesenchymal condensation in a multiscale, discrete stochastic model. PLoS Comput Biol. 3: e76.
9. CRICK F. (1970). Diffusion in embryogenesis. Nature 225: 420-422.
10. CHUONG, C-M., WU, P., PLIKUS MV, JIANG, TX, WIDELITZ, RB. (2006). Engineering Stem cells into organs: Topobiological transformations demonstrated by beak, feather and other ectodermal organ morphogenesis. Curr. Top. Dev. Biol. 72: 237-274.
11. CHUONG C.M. (2009a). Limb pattern, physical mechanisms and morphological evolution - an interview with Stuart A. Newman Int. J. Dev. Biol. 53: 663-671. (doi: 10.1387/ijdb.072553cc)
12. CHUONG C.M. (2009b). Skin, cornea and stem cells - an interview with Danielle Dhouailly Int. J. Dev. Biol. 53: 775-782. (doi: 10.1387/ijdb.072552cc)
13. DAVIDSON, E.H. AND ERWIN D.H. (2006). Gene regulatory networks and the evolution of animal body plans. Science 311: 796-800.
14. DEQUANT ML, GLYNN E, GAUDENZ K, WAHL M, CHEN J, MUSHEGIAN A, POURQUI O. (2006). A complex oscillating network of signaling genes underlies the mouse segmentation clock. Science. 314: 1595-1598.
15. DUBOULR D. (1994). Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony. Dev.Suppl, 135-142.
16. EDELMAN, G.M. (1993). Topobiology: An Introduction to Molecular Embryology (Paperback) Basic Books.
17. HAZEN, R.M. (2009). The emergence of patterning in life's origin and evolution. Int. J. Dev. Biol. 53: 683-692. (doi: 10.1387/ijdb.092936rh)
18. JIANG, T-X., WIDELITZ R.B, SHEN, W.M., WILL, P., WU, D.Y., LIN, C.M., JUNG, J.S., CHUONG, C.-M. (2004). Integument pattern formation involves genetic and epigenetic controls operated at different levels: Feather arrays simulated by a digital hormone model. Int. J. Dev. Biol. 48: 117-136.
19. KAUFFMAN, S.A. (1993). The Origins of Order: Self-Organization and Selection in Evolution. Oxford University Press, USA.
20. KONDO, S., IWASHITA, M.,YAMAGUCHI, M. (2009). How animals get their skin patterns: fish pigment patterns as a living Turing wave. Int. J. Dev. Biol. 53: 851-856. (doi: 10.1387/ijdb.072505sk)
21. LIU, R.T., LIAW, S.S., MAINI, P.K. (2006). Two-stage Turing model for generating pigment patterns on the leopard and the jaguar. Phys. Rev. E. Stat. Nonlin. Soft Matter Phys. 74: 011914-8.
22. MAINI, P.K., BAKER, R.E., CHUONG, C.-M. (2006). The Turing model comes of molecular age. Science. 314: 1397-13.
23. MEINHARDT, H., GIERER, A. (2000). Pattern formation by local self-activation and lateral inhibition. Bioessays. 22: 753-760.
24. KMITA, M., KONCO, T. and DUBOULE, D. (2000). Targeted inversion of a polar silencer within the HoxD complex re-allocates domains of enhancer sharing. Nat. Genet. 26: 451-454.
25. KURAKU S and MEYER A, (2009). The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication. Int. J. Dev. Biol. 53: 765-773. (doi: 10.1387/ijdb.072533km)
26. MURRAY, J.D. (2003). Mathematical Biology II: Spatial Models and Biomedical Applications. New York: Springer-Verlag.
27. NEWMAN, S.A. AND BHAT, R. (2009). Dynamic patterning modules: a "pattern language" for development and evolution of multi-cellular from. Int. J. Dev. Biol. 53: 693-705. (doi: 10.1387/ijdb.072481sn)
28. PETER, I.S. and DAVIDSON, E.H. (2009). Genomic control of patterning. Int. J. Dev. Biol. 53: 707-716. (doi: 10.1387/ijdb.072495ip)
29. PLIKUS M.V., MAYER J.A., DE LA CRUZ D., BAKER R.E., MAINI P.K., MAXSON R. AND CHUONG C.-M. (2008). Cyclic dermal BMP signaling regulates stem cell activation during hair regeneration. Nature. 451: 340-344.
30. PLIKUS, M.V., WIDELITZ, R.B., MAXON, R.E., CHUONG, C.-M. (2009). Analyses of regenerative wave patterns in adult hair follicle populations reveal macroenvironmental regulation of stem cell activity Int. J. Dev. Biol. 53: 857-868. (doi: 10.1387/ijdb.072564mp)
31. RICHARDSON M.K. (2009a). Diffusible gradients are out - an interview with Lewis Wolpert. Int. J. Dev. Biol. 53: 659-662. (doi: 10.1387/ijdb.072559mr)
32. RICHARDSON M.K. (2009b). The Hox Complex - an interview with Denis Duboule Int. J. Dev. Biol. 53: 717-723. (doi: 10.1387/ijdb.072558mr)
33. RICHARDSON MK (2009c). Molecular tools, classic questions - an interview with Clifford Tabin. Int. J. Dev. Biol. 53: 725-731. (doi: 10.1387/ijdb.072575mr)
34. RICHARDSON MK and CHUONG, C.M. (2009). Regeneration and pattern formation - an interview with Susan Bryant. Int. J. Dev. Biol. 53: 827-833. (doi: 10.1387/ijdb.082596mr)
35. ROIGNANT, J.Y. and TREISMAN, J.E. (2009). Pattern formation in the Drosophila eye disc Int. J. Dev. Biol. 53: 795-804. (doi: 10.1387/ijdb.072483jr)
36. RUBENSTEIN M, SAI Y, CHUONG, C.-M., SHEN WM. (2009). Regenerative patterning in swarm robots: mutual benefits of research in robotics and stem cell biology. Int. J. Dev. Biol. 53: 869-881. (doi: 10.1387/ijdb. 092937mr)
37. SALAZAR-CIUDAD, I., JERNVALL J., NEWMAN, S.A. (2003). Mechanisms of pattern formation in development and evolution. Development 130: 2027-2037.
38. SLACK J. (1984). A Rosetta stone for pattern formation in animals? Nature 310: 364-365.
39. STENN KS and PAUS R. Controls of hair follicle cycling. (2001). Physiol Rev. 81: 449-494.
40. TOWERS M and TICKLE C (2009). Generation of pattern and form in the developing Limb Int. J. Dev. Biol. 53: 805-812. (doi: 10.1387/ijdb.072499mt)
41. TURING A. M. (1952). The Chemical Basis of Morphogenesis. Phil. Trans. Roy. Soc. London Serie B-Biol. Sci. 237: 37-72.
42. VANAG, V.K and EPSTEIN, I.R. (2009). Pattern formation mechanisms in reactiondiffusion systems. Int. J. Dev. Biol. 53: 673-681. (doi: 10.1387/ijdb.072484vv)
43. WEISS, K.M. and BUCHANAN, A.V. (2009). The cooperative genome: organisms as social contracts. Int. J. Dev. Biol. 53: 753-763. (doi: 10.1387/ijdb.072497kw)
44. WOLPERT, L. (1969). Positional information and the spatial pattern of cell differentiation. J. Theor. Biol. 25: 1-47.
45. WOLPERT, L., SMITH, J., LAWRENCE, P., ROBERTSON, MEYEROWITZ, E. (2006). Principles of Development. Oxford University Press, Oxford.
46. WU, P., JIANG, T.-X., SUKSAWEANG, S, WIDELTZ, RB., CHUONG, CM., 2004. Molecular Shaping of the Beak. Science, 305: 1465-1466.
47. YUE, Z., JIANG, T.-X., WIDELITZ. R. B., AND CHUONG, CM. 2005. Mapping stem cell activities in the feather follicle. Nature 438: 1026-1029.