Analysis of chromosome translocations involving MML by hybridization with an oligonucleotide microarray

Molekulyarnaya Biologiya

Volumn 38, Issue 3, 2004, Pages 449-456

  Mityaeva, O N ^a   Nasedkina, T V ^a   Zharinov, V S ^b   Isaeva, E A ^b   Turigin, A Yu ^a   Chupeeva, V V ^a   Kerindlin, E Ya ^a   Mirzabekov, A D ^a  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^b N N BLOKHIN NATIONAL MEDICAL RESEARCH CENTER OF ONCOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME ANALYSIS; CHROMOSOME REARRANGEMENT; CHROMOSOME TRANSLOCATION; DNA MICROARRAY; HEMATOLOGIC MALIGNANCY; HUMAN; HYBRIDIZATION; LEUKEMIA; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RISK ASSESSMENT; CELL LINE; CHROMOSOME 11; CHROMOSOME 4; GENE TRANSLOCATION; GENETICS; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; PROTO ONCOGENE;

DNA BINDING PROTEIN; MIXED LINEAGE LEUKEMIA PROTEIN; MLL PROTEIN, HUMAN; PRIMER DNA; TRANSCRIPTION FACTOR;

BASE SEQUENCE; CELL LINE; CHROMOSOMES, HUMAN, PAIR 11; CHROMOSOMES, HUMAN, PAIR 4; DNA PRIMERS; DNA-BINDING PROTEINS; HUMANS; MYELOID-LYMPHOID LEUKEMIA PROTEIN; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTO-ONCOGENES; TRANSCRIPTION FACTORS; TRANSLOCATION, GENETIC;

EID: 6944236242     PISSN: 00268984     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (24)

1. Rabbits T.H. 1994. Chromosomal translocations in human cancer. Nature. 372, 143-149.
2. Look A.T. 1997. Oncogenic transcription factors in the human acute leukemias. Science. 278, 1059-1064.
3. Rubnitz J.E., Look A.T. 1998. Molecular basis of leukemogenesis. Current Opin. Hematol. 5, 264-270.
4. Borkhardt A., Wuchter C., Viehmann S., Pils S., Teigler-Schlegel A., Stanulla M., Zimmermann M., Ludwig W.D., Janka-Schaub G., Schrappe M., Harbott J. 2002. Infant acute lymphoblastic leukemia - combined cytogenetic, immunophenotypical and molecular analysis of 77 cases. Leukemia. 16, 1685-1690.
5. Pui C.H., Gaynon P.S., Boyett J.M., Chessells J.M., Baruchel A., Kamps W., Silverman L.B., Biondi A., Harms D.O., Vilmer E., Schrappe M., Camilla B. 2002. Outcome of treatment in childhood acute lymphoblastic leukaemia with rearrangements of the 11q23 chromosomal region. Lancet. 359, 1909-1915.
6. Pui C.H., Chessells J.M., Camilla B., Baruchel A., Biondi A., Boyett J.M., Carroll A., Eden O.B., Evans W.E., Gadner H., Harbott J., Harms D.O., Harrison C.J., Harrison P.L., Heerema N., Janka-Schaub G., Kamps W., Masera G., Pullen J., Raimondi S.C., Richards S., Riehm H., Sallan S., Sather H., Shuster J., Silverman L.B., Valsecchi M.G., Vilmer E., Zhou Y. 2003. Clinical heterogeneity in childhood acute lymphoblastic leukemia with 11q23 rearrangements. Leukemia, 17, 700-706.
7. Cimino G., Elia L., Rapanotti M.C., Sprovieri T., Mancini M., Cuneo A., Mecucci C., Fioritoni G., Carotenuto M., Morra E., Liso V., Annino L., Saglio G., De Rossi G., Foa R., Mandelli F. 2000. A prospective study of residual-disease monitoring of the ALL/AF4 transcript in patients with t(4;11) acute lymphoblastic leukemia. Blood. 95, 96-101.
8. Nasedkina T., Domer P., Zharinov V., Hoberg J., Lysov Yu., Mirzabekov A. 2002. Identification of chromosomal translocations in leukemia using oligonucleotide microarrays. Haematologica. 87, 363-372.
9. Nasedkina T.V., Zharinov V.S., Isaeva E.A., Mityaeva O.N., Yurasov R.N., Surzhikov S.A., Turigin A.Y., Rubina A.Y., Karachunskii A.I., Gartenhaus R.B., Mirzabekov A.D. 2003. Clinical screening of gene rearrangements in childhood leukemia using a multiplex PCR-microarray approach. Clin. Canc. Res. 9, 5620-5629.
10. Chomczynski P., Sacchi N. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenolchloroform extraction. Anal. Biochem. 162, 156-159.
11. Pallisgaard N., Hokland P., Riishoj D.C., Pedersen B., Jorgensen P. 1998. Multiplex reverse transcription-polymerase chain reaction for simultaneous screening of 29 translocations and chromosomal aberrations in acute leukemia. Blood. 92, 574-588.
12. Schnittger S., Wormann B., Hiddemann W., Griesinger F. 1998. Partial tandem duplications of the MLL gene are detectable in peripheral blood and bone marrow of nearly all healthy donors. Blood. 92, 1728-1734.
13. Scurto P., Hsu Rocha M., Kane J.R., Williams W.K., Haney D.M., Conn W.P., Shurtleff S.A., Downing, J.R. 1998. A multiplex RT-PCR assay for the detection of chimeric transcripts encoded by the risk-stratifying translocations of pediatric acute lymphoblastic leukemia. Leukemia. 12, 1994-2005.
14. Rubina A.Y., Dementieva E.I., Slomakhin A.A., Darii E.L., Pan'kov S.V., Barsky V.E., Ivanov S.M., Konovalova E.V., Mirzabekov A.D. 2003. Hydrogel-based protein microchips: manufacturing, properties, and applications. Biotechniques. 34, 1008-1022.
15. Fotin A., Drobyshev A., Proudnikov D., Perov A., Mirzabekov A. 1998. Parallel thermodynamic analysis of duplexes on oligodeoxyribonucleotide microchips. Nucleic Acids Res. 26, 1515-1521.
16. Lion T., Kidd V. 1998. Debate round-table. Appropriate controls for RT-PCR. Leukemia. 12, 1893-1993.
17. Lo Coco F., Diverio D., Falini B., Biondi A., Nervi C., Pelicci P.G. 1999. Genetic diagnosis and molecular monitoring in the management of acute promyelocytic leukemia. Blood. 94, 12-22.
18. Druker B.J., Sawyers, C.L., Kantarjian H., Resta D.J., Reese S.F., Ford J.M., Capdeville R., Talpaz M. 2001. Activity of aspecific inhibitor of the Bcr-Abl tyrosine-kinase in the blast crisis of chronic myeloid leukemia with the Philadelphia chromosome. N. Engl. J. Med. 344, 1038-1042.
19. Pui C.H., Raimondi S.C., Srivastava D.K., Tong X., Behm F.G., Razzouk B., Rubnitz I.E., Sandlund J.T., Evans W.E., Ribeiro R. 2000. Prognostic factors in infants with acute myeloid leukemia. Leukemia. 14, 684-687.
20. Rubnitz J.E., Raimondi S.C., Tong X., Srivastava D.K., Razzouk B.I., Shurtleff S.A., Downing J.R., Pui C.H., Ribeiro R.C., Behm F.G. 2002. Favorable impact of the t(9;11) in childhood acute myeloid leukemia. J Clin Oncol. 20, 2302-2309.
21. van der Burg M., Beverloo H.B., Langerak A.W., Wijsman J., van Drunen E., Slater R., van Dongen J.J. 1999. Rapid and sensitive detection of all types of MLL gene translocations with a single FISH probe set. Leukemia. 13, 2107-2113.
22. Anderson A., Hoglund M., Johansson B., Lassen C., Billstrom R., Garwicz S., Nilsson P.G., Mitelman F., Fioretos T. 2001. Paired multiplex reverse-transcriptase polymerase chain reaction (PMRT-PCR) analysis as a rapid and accurate diagnostic tool for the detection of MLL fusion genes in hematologic malignancies. Leukemia. 15, 1293-1300.
23. Hunger S.P., Cleary M.L. 1998. What significance should we attribute to the detection of MLL fusion transcripts? Blood. 92, 709-711.