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Volumn 37, Issue 3, 2009, Pages 523-530

Site-directed mutagenesis and computational study of the Y366 active site in Bacillus subtilis protoporphyrinogen oxidase

Author keywords

Kinetics; Molecular docking; Protoporphyrinogen oxidase; Site directed mutagenesis

Indexed keywords

CHLOROPHYLL; DIPHENYL ETHER; FLAVINE ADENINE NUCLEOTIDE; HEME; PROTOPORPHYRIN; PROTOPORPHYRINOGEN OXIDASE; RECOMBINANT ENZYME;

EID: 69249233521     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-009-0256-5     Document Type: Article
Times cited : (11)

References (23)
  • 1
    • 0025830469 scopus 로고
    • A method to identify protein sequences that fold into a known 3-dimensional structure
    • JU Bowie R Luthy D Eisenberg 1991 A method to identify protein sequences that fold into a known 3-dimensional structure Science 253 164 170
    • (1991) Science , vol.253 , pp. 164-170
    • Bowie, J.U.1    Luthy, R.2    Eisenberg, D.3
  • 2
    • 0018870393 scopus 로고
    • Fluorometric assay for measurement of protoporphyrinogen oxidase activity in mammalian tissue
    • DA Brenner JR Bloomer 1980 Fluorometric assay for measurement of protoporphyrinogen oxidase activity in mammalian tissue Clin Chim Acta 100 259 266
    • (1980) Clin Chim Acta , vol.100 , pp. 259-266
    • Brenner, D.A.1    Bloomer, J.R.2
  • 3
    • 85009631734 scopus 로고    scopus 로고
    • Generation of resistance to the diphenyl ether herbicide, oxyfluorfen, via expression of the Bacillus subtilis protoporphyrinogen oxidase gene in transgenic tobacco plants
    • KW Choi O Han HJ Lee YC Yun YH Moon M Kim YI Kuk SU Han JO Guh 1998 Generation of resistance to the diphenyl ether herbicide, oxyfluorfen, via expression of the Bacillus subtilis protoporphyrinogen oxidase gene in transgenic tobacco plants Biosci Biotech Biochem 62 558 560
    • (1998) Biosci Biotech Biochem , vol.62 , pp. 558-560
    • Choi, K.W.1    Han, O.2    Lee, H.J.3    Yun, Y.C.4    Moon, Y.H.5    Kim, M.6    Kuk, Y.I.7    Han, S.U.8    Guh, J.O.9
  • 4
    • 84988115618 scopus 로고
    • Validation of the general-purpose Tripos 5.2 force-field
    • M Clark RD Cramer N Vanopdenbosch 1989 Validation of the general-purpose Tripos 5.2 force-field J Comput Chem 10 982 1012
    • (1989) J Comput Chem , vol.10 , pp. 982-1012
    • Clark, M.1    Cramer, R.D.2    Vanopdenbosch, N.3
  • 5
    • 33846013952 scopus 로고    scopus 로고
    • Crystal structure of protoporphyrinogen oxidase from Myxococcus xanthus and its complex with the inhibitor acifluorfen
    • HR Corradi AV Corrigall E Boix CG Mohan ED Sturrock PN Meissner KR Acharya 2006 Crystal structure of protoporphyrinogen oxidase from Myxococcus xanthus and its complex with the inhibitor acifluorfen J Biol Chem 281 38625 38633
    • (2006) J Biol Chem , vol.281 , pp. 38625-38633
    • Corradi, H.R.1    Corrigall, A.V.2    Boix, E.3    Mohan, C.G.4    Sturrock, E.D.5    Meissner, P.N.6    Acharya, K.R.7
  • 7
    • 0027969301 scopus 로고
    • Bacillus subtilis Hem y is a peripheral membrane-protein essential for protoheme-IX synthesis which can oxidize coproporphyrinogen-III and protoporphyrinogen-IX
    • M Hansson L Hederstedt 1994 Bacillus subtilis Hem Y is a peripheral membrane-protein essential for protoheme-IX synthesis which can oxidize coproporphyrinogen-III and protoporphyrinogen-IX J Bacteriol 176 5962 5970
    • (1994) J Bacteriol , vol.176 , pp. 5962-5970
    • Hansson, M.1    Hederstedt, L.2
  • 8
    • 37349041738 scopus 로고    scopus 로고
    • Treatment options in acute porphyria, porphyria cutanea tarda, and erythropoietic protoporphyria
    • P Harper S Wahlin 2007 Treatment options in acute porphyria, porphyria cutanea tarda, and erythropoietic protoporphyria Curr Treat Opt Gastroenterol 10 444 455
    • (2007) Curr Treat Opt Gastroenterol , vol.10 , pp. 444-455
    • Harper, P.1    Wahlin, S.2
  • 10
    • 36549084660 scopus 로고    scopus 로고
    • Resistance mechanisms in protoporphyrinogen oxidase (PROTOX) inhibitor-resistant transgenic rice
    • H Il Jung YI Kuk 2007 Resistance mechanisms in protoporphyrinogen oxidase (PROTOX) inhibitor-resistant transgenic rice J Plant Biol 50 586 594
    • (2007) J Plant Biol , vol.50 , pp. 586-594
    • Il Jung, H.1    Kuk, Y.I.2
  • 11
    • 0041662029 scopus 로고    scopus 로고
    • A point mutation of valine-311 to methionine in Bacillus subtilis protoporphyrinogen oxidase does not greatly increase resistance to the diphenyl ether herbicide oxyfluorfen
    • E Jeong T Houn Y Kuk ES Kim HK Chandru M Baik K Back JO Guh O Han 2003 A point mutation of valine-311 to methionine in Bacillus subtilis protoporphyrinogen oxidase does not greatly increase resistance to the diphenyl ether herbicide oxyfluorfen Bioorg Chem 31 389 397
    • (2003) Bioorg Chem , vol.31 , pp. 389-397
    • Jeong, E.1    Houn, T.2    Kuk, Y.3    Kim, E.S.4    Chandru, H.K.5    Baik, M.6    Back, K.7    Guh, J.O.8    Han, O.9
  • 12
    • 2442563409 scopus 로고    scopus 로고
    • Crystal structure of protoporphyrinogen IX oxidase: A key enzyme in haem and chlorophyll biosynthesis
    • M Koch C Breithaupt R Kiefersauer J Freigang R Huber A Messerschmidt 2004 Crystal structure of protoporphyrinogen IX oxidase: a key enzyme in haem and chlorophyll biosynthesis EMBO J 23 1720 1728
    • (2004) EMBO J , vol.23 , pp. 1720-1728
    • Koch, M.1    Breithaupt, C.2    Kiefersauer, R.3    Freigang, J.4    Huber, R.5    Messerschmidt, A.6
  • 13
    • 0000243829 scopus 로고
    • Procheck-a program to check the stereochemical quality of protein structures
    • RA Laskowski MW Macarthur DS Moss JM Thornton 1993 Procheck-a program to check the stereochemical quality of protein structures J Appl Cryst 26 283 291
    • (1993) J Appl Cryst , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 14
    • 0033923452 scopus 로고    scopus 로고
    • Transgenic rice plants expressing a Bacillus subtilis protoporphyrinogen oxidase gene are resistant to diphenyl ether herbicide oxyfluorfen
    • HJ Lee SB Lee JS Chung SU Han O Han JO Guh JS Jeon G An K Back 2000 Transgenic rice plants expressing a Bacillus subtilis protoporphyrinogen oxidase gene are resistant to diphenyl ether herbicide oxyfluorfen Plant Cell Phys 41 743 749
    • (2000) Plant Cell Phys , vol.41 , pp. 743-749
    • Lee, H.J.1    Lee, S.B.2    Chung, J.S.3    Han, S.U.4    Han, O.5    Guh, J.O.6    Jeon, J.S.7    An, G.8    Back, K.9
  • 15
    • 0030738530 scopus 로고    scopus 로고
    • Cloning and characterization of a plastidal and a mitochondrial isoform of tobacco protoporphyrinogen IX oxidase
    • I Lermontova E Kruse HP Mock B Grimm 1997 Cloning and characterization of a plastidal and a mitochondrial isoform of tobacco protoporphyrinogen IX oxidase Pro Nat Acad Sci USA 94 8895 8900
    • (1997) Pro Nat Acad Sci USA , vol.94 , pp. 8895-8900
    • Lermontova, I.1    Kruse, E.2    Mock, H.P.3    Grimm, B.4
  • 16
    • 0023186885 scopus 로고
    • An h.p.l.c. assay for protoporphyrinogen oxidase activity in rat liver
    • F Li CK Lim TJ Peters 1987 An HPLC assay for protoporphyrinogen oxidase activity in rat-liver Biochem J 243 863 866 (Pubitemid 17073728)
    • (1987) Biochemical Journal , vol.243 , Issue.3 , pp. 863-866
    • Li, F.1    Chang Kee Lim2    Peters, T.J.3
  • 17
    • 0024970331 scopus 로고
    • Protoporphyrinogen oxidase as a molecular target for diphenyl ether herbicides
    • M Matringe JM Camadro P Labbe R Scalla 1989 Protoporphyrinogen oxidase as a molecular target for diphenyl ether herbicides Biochem J 260 231 235
    • (1989) Biochem J , vol.260 , pp. 231-235
    • Matringe, M.1    Camadro, J.M.2    Labbe, P.3    Scalla, R.4
  • 21
    • 33845378399 scopus 로고
    • Electronegativity equalization-application and parametrization
    • WJ Mortier K Vangenechten J Gasteiger 1985 Electronegativity equalization-application and parametrization J Am Chem Soc 107 829 835
    • (1985) J Am Chem Soc , vol.107 , pp. 829-835
    • Mortier, W.J.1    Vangenechten, K.2    Gasteiger, J.3
  • 22
    • 0030087527 scopus 로고    scopus 로고
    • An endoplasmic reticulum plant enzyme has protoporphyrinogen IX oxidase activity
    • K Retzlaff P Boger 1996 An endoplasmic reticulum plant enzyme has protoporphyrinogen IX oxidase activity Pest Biochem Physiol 54 105 114
    • (1996) Pest Biochem Physiol , vol.54 , pp. 105-114
    • Retzlaff, K.1    Boger, P.2
  • 23
    • 27644531430 scopus 로고    scopus 로고
    • A continuous fluorimetric assay for protoporphyrinogen oxidase by monitoring porphyrin accumulation
    • M Shepherd HA Dailey 2005 A continuous fluorimetric assay for protoporphyrinogen oxidase by monitoring porphyrin accumulation Ana
    • (2005) Ana
    • Shepherd, M.1    Dailey, H.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.