Isolation and characterization of microsatellite markers from the Mediterranean fruit fly, Ceratitis capitata: Cross-species amplification in other Tephritidae species reveals a varying degree of transferability

Molecular Genetics and Genomics

Volumn 282, Issue 3, 2009, Pages 283-306

  Stratikopoulos, E E ^a,b   Augustinos, A A ^a,c   Pavlopoulos, I D ^a   Economou, K Ph ^a   Mintzas, A ^a   Mathiopoulos, K D ^a,c   Zacharopoulou, Antigone ^a  

^a UNIVERSITY OF PATRAS   (Greece)

^b Och Spine at New York Presbyterian Hospitals   (United States)

^c UNIVERSITY OF THESSALY   (Greece)

Author keywords

Ceratitis capitata; Cross species amplification; In situ hybridization; Medfly; Microsatellites; Tephritidae

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; CROSS LINKING; CROSS SPECIES AMPLIFICATION; CYTOGENETICS; GENE AMPLIFICATION; GENE ISOLATION; GENE LOCUS; GENE MAPPING; GENE TRANSFER; GENETIC TRAIT; GENETIC VARIABILITY; GENOTYPE; IN SITU HYBRIDIZATION; MEDITERRANEAN FRUIT FLY; MICROSATELLITE MARKER; MOLECULAR CLONING; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYTENE CHROMOSOME; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIVERSITY; TEPHRITIDAE;

ANIMALS; BASE SEQUENCE; CERATITIS CAPITATA; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; IN SITU HYBRIDIZATION, FLUORESCENCE; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; TEPHRITIDAE;

CERATITIS CAPITATA; HEXAPODA; TEPHRITIDAE;

EID: 69249213498     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-009-0465-3     Document Type: Article

References (62)

1. MD Adams SE Celniker RA Holt, et al. 2000 The genome sequence of Drosophila melanogaster Science 287 2185 2195
2. Alphey LS (2007) Engineering insects for the sterile insect technique. In: Vreysen MJB, Robinson AS, Hendrichs J (eds) Area-wide control of insect pests: from research to field implementation. Springer, Netherlands, pp 51-60
3. Ashburner M (1989) Drosophila: a laboratory manual. Cold Spring Harbour Laboratory Press, New York, pp 108-109
4. AA Augustinos EE Stratikopoulos E Drosopoulou EG Kakani P Mavragani-Tsipidou A Zacharopoulou KD Mathiopoulos 2008 Isolation and characterization of polymorphic microsatellite markers from the olive fly, Bactrocera oleae, and their cross-species amplification in the Tephritidae family BMC Genomics 9 618
5. D Bachtrog S Weiss B Zangerl G Brem C Schlötterer 1999 Distribution of dinucleotide microsatellites in the Drosophila melanogaster genome Mol Biol Evol 16 602 610
6. FN Baliraine M Bonizzoni Osir EO SA Lux FJ Mulaa L Zheng LM Gomulski G Gasperi AR Malacrida 2003 Comparative analysis of microsatellite loci in four fruit fly species of the genus Ceratitis (Diptera: Tephritidae) Bul Entom Res 93 1 10
7. T Barbará C Palma-Silva GM Paggi F Bered MF Fay C Lexer 2007 Cross-species transfer of nuclear microsatellite markers: potential and limitations Mol Ecol 16 3759 3767
8. M Bonizzoni AR Malacrida CR Guglielmino LM Gomulski G Gasperi L Zheng 2000 Microsatellite polymorphism in the Mediterranean fruit fly, Ceratitis capitata Insect Mol Biol 9 251 261
9. M Bonizzoni L Zheng CR Guglielmino DS Haymer G Gasperi LM Gomulski AR Malacrida 2001 Microsatellite analysis of medfly bioinfestations in California Mol Ecol 10 2515 2524
10. M Bonizzoni BI Katsoyannos R Marguerie CR Guglielmino G Gasperi A Malacrida T Chapman 2002 Microsatellite analysis reveals remating by wild Mediterranean fruit fly females, Ceratitis capitata Mol Ecol 11 1915 1921
11. M Bonizzoni CR Guglielmino CJ Smallridge M Gomulski AR Malacrida G Gasperi 2004 On the origins of medfly invasion and expansion in Australia Mol Ecol 13 3845 3855
12. MW Bruford RK Wayne 1993 Microsatellites and their application to population genetic studies Cur Opin Gen Dev 3 939 943
13. SE Chirhart RL Honeycutt IF Greenbaum 2005 Microsatellite variation and evolution in the Peromyscus maniculatus species group Mol Phyl Evol 34 408 415
14. A Cuadrado T Schwarzacher 1998 The chromosomal organization of simple sequence repeats in wheat and rye genomes Chromosoma 107 587 594
15. A Estoup M Solignac M Harry J Cornuet 1993 Characterization of (GT)(n) and (CT)(n) microsatellites in two insect species: Apis mellifera and Bombus terrestris Nucl Acid Res 21 1427 1431
16. Fletcher BS (1989) Life history strategies of tephritid fruit flies. In: Robinson AS, Hooper G (eds) Fruit flies, their biology, natural enemies and control, vol 3B. Elsevier Science Publishers, Amsterdam, pp 195-208
17. SH Forbes JT Hogg FC Buchanan AM Crawford FW Allendorf 1995 Microsatellite evolution in congeneric mammals: domestic and bighorn sheep Mol Biol Evol 12 1106 1113
18. Franz G (2005) Genetic sexing strains in Mediterranean fruit fly, an example for other species amenable to large-scale rearing for the sterile insect technique. In: Dyck VA, Hendrichs J, Robinson AS (eds) Sterile insect technique: principles and practice in area-wide integrated management. Springer, Netherlands, pp 427-452
19. A Gariou-Papalexiou P Gourzi A Delprat D Kritikou K Rapti B Chrysanthakopoulou A Mintzas A Zacharopoulou 2002 Polytene chromosomes as tools in the genetic analysis of the Mediterranean fruit fly, Ceratitis capitata Genetica 116 59 71
20. G Gasperi M Bonizzoni LM Gomulski V Murelli C Torti AR Malacrida CR Guglielmino 2002 Genetic differentiation, gene flow and the origin of infestations of the medfly, Ceratitis capitata Genetica 116 125 135
21. DB Goldstein DD Pollock 1997 Launching microsatellites: a review of mutation processes and methods of phylogenetic inference J. Heredity 88 335 342
22. LM Gomulski C Torti AR Malacrida G Gasperi 1997 Ccmar1, a full-length mariner element from the Mediterranean fruit fly, Ceratitis capitata Insect Mol Biol 6 241 253
23. LM Gomulski C Torti V Murelli M Bonizzoni G Gasperi AR Malacrida 2004 Medfly transposable elements: diversity, evolution, genomic impact and possible applications Insect Bioch Mol Biol 34 139 148
24. LM Gomulski G Dimopoulos Z Xi MB Soares MF Bonaldo AR Malacrida G Gasperi 2008 Gene discovery in an invasive tephritid model pest species, the Mediterranean fruit fly, Ceratitis capitata BMC Genomics 9 243
25. HY Han KE Ro BA McPheron 2006 Molecular phylogeny of the Subfamily Tephritinae (Diptera: Tephritidae) Based on Mitochondrial 16S rDNA Sequences Mol Cells 22 78 88
26. Hoelzel AR (1998) Molecular genetic analysis of populations: a practical approach, 2nd edn. Oxford University Press, New York
27. CM Hutter MD Schug CF Aquadro 1998 Microsatellite variation in Drosophila melanogaster and Drosophila simulans: a reciprocal test of the ascertainment bias hypothesis Mol Biol Evol 15 1620 1636
28. L Jin C Macaubas J Hallmayer A Kimura E Mignot 1996 Mutation rate varies among alleles at microsatellite locus: phylogenetic evidence Proc Natl Acad Sci USA 75 15285 15288
29. MW Kinnear HS Bariana JA Sved M Frommer 1998 Polymorphic microsatellite markers for population analysis of a Tephritidae pest species, Bactrocera tryoni Mol Ecol 7 1489 1495
30. K Kraaijeveld BI Katsoyannos M Stavrinides NA Kouloussis T Chapman 2005 Remating in wild females of the Mediterranean fruit fly, Ceratitis capitata Anim Behav 69 771 776
31. S Kumar J Dudley M Nei K Tamura 2008 MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences Brief Bioinform 9 9 306
32. Y Li AB Korol T Fahima A Beiles E Nevo 2002 Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review Mol Ecol 11 2453 2465
33. AR Malacrida LM Gomulski M Bonizzoni S Bertin G Gasperi CR Guglielmino 2007 Globalization and fruitfly invasion and expansion: the medfly paradigm Genetica 131 1 9
34. MD Meixner BA Mcpheron JG Silva GE Gasparich WS Sheppard 2002 The Mediterranean fruit fly in California: evidence for multiple introductions and persistent populations based on microsatellite and mitochondrial DNA variability Mol Ecol 11 891 899
35. L Ramsay M Macaulay L Cardle M Morgante S Degli Ivanissevich E Maestri W Powell R Waugh 1999 Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley Plant Sci 17 415 425
36. H Ranson MG Paton B Jensen L McCarroll A Vaughan JR Hogan J Hemingway FH Collins 2004 Genetic mapping of genes conferring permethrin resistance in the malaria vector, Anopheles gambiae Insect Mol Biol 13 379 386
37. M Raymond F Rousset 1995 GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism J Hered 86 24 8 249
38. AS Robinson 2002 Genetic sexing strains in medfly, Ceratitis capitata, sterile insect technique programmes Genetica 116 5 13
39. Robinson AS (2005) Genetic basis of the sterile insect technique. In: Dyck VA, Hendrichs J, Robinson AS (eds) Sterile Insect Technique: principles and practice in area-wide integrated management. Springer, Netherlands, pp 95-114
40. DC Rubinsztein W Amos J Leggo S Goodburn S Jain S Li RL Margolis CA Ross MA Ferguson-Smith 1995 Microsatellite evolution-evidence for directionality and variation in rate between species Nat Genet 10 337 343
41. MF Schetelig C Caceres A Zacharopoulou G Franz EA Wimmer 2009 Conditional embryonic lethality to improve the sterile insect technique in Ceratitis capitata (Diptera: Tephritidae) BMC Biol 7 4
42. C Schlötterer 1998 Genome evolution: are microsatellites really simple sequences? Curr Biol 8 R132 R134
43. C Schlötterer 2001 Genealogical inference of closely related species based on microsatellites Gen Res 78 209 212
44. C Schlötterer B Harr 2000 Drosophila virilis has long and highly polymorphic microsatellites Mol Biol Evol 17 1641 1646
45. C Schlötterer J Pemberton 1994 The use of microsatellites for genetic analysis of natural populations EXS 69 203 214
46. MD Schug KA Wetterstrand MS Gaudette RH Lim CM Hutter CF Aquadro 1998 The distribution and frequency of microsatellite loci in Drosophila melanogaster Mol Ecol 7 57 70
47. MD Segura C Callejas MP Fernández MD Ochando 2006 New contributions towards the understanding of the phylogenetic relationships among economically important fruit flies (Diptera: Tephritidae) Bull Entomol Res 96 279 288
48. EE Stratikopoulos AA Augustinos A Gariou-Papalexiou A Zacharopoulou KD Mathiopoulos 2002 Identification and partial characterization of a new Ceratitis capitata-specific 44-bp pericentromeric repeat Chrom Res 10 287 295
49. EE Stratikopoulos AA Augustinos YG Petalas MN Vrahatis A Mintzas KD Mathiopoulos A Zacharopoulou 2008 An integrated genetic and cytogenetic map for the Mediterranean fruit fly, Ceratitis capitata, based on microsatellite and morphological markers Genetica 133 147 157
50. D Tautz C Schlötterer 1994 Simple sequences Curr Opin Genet Dev 4 832 837
51. R Van Treuren H Kuittinen K Karkkainen E Baena-Gonzalez O Savolainen 1997 Evolution of microsatellites in Arabis petraea and Arabis lyrata, outcrossing relatives of Arabidopsis thaliana Mol Biol Evol 14 220 229
52. M Verras M Mavroidis G Kokolakis P Gourzi A Zacharopoulou AC Mintzas 1999 Cloning and characterization of CcEcR. An ecdysone receptor homolog for the Mediterranean fruit fly Ceratitis capitata Eur J Biochem 265 798 808
53. MJ Whitten 1969 Automated sexing of pupae and its usefulness in control by sterile insects J Econ Entomol 62 272 273
54. M Wierdl M Dominska TD Petes 1997 Microsatellite instability in yeast: dependence on the length of the microsatellite Genetics 146 769 779 (Pubitemid 27290966)
55. J Wilder H Hollocher 2001 Mobile elements and the genesis of microsatellites in Dipterans Mol Biol Evol 18 384 392
56. CS Wondji J Morgan M Coetzee RH Hunt K Steen WC Black IV J Hemingway H Ranson 2007 Mapping a quantitative trait locus (QTL) conferring pyrethroid resistance in the African malaria vector Anopheles funestus BMC Genomics 8 34
57. Yeh FC, Yang RC, Boyle TBJ, Ye ZH, Mao JX (1997) POPGENE, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Center, University of Alberta, Canada
58. A Zacharopoulou 1990 Polytene chromosome maps in the Medfly Ceratitis capitata Genome 33 184 197
59. A Zacharopoulou M Frisardi C Savakis AS Robinson P Tolias M Konsolaki K Komitopoulou FC Kafatos 1992 The genome of the Mediterranean fruit fly C. capitata: localization of molecular markers by in situ hybridization to salivary gland polytene chromosomes Chromosoma 101 448 455
60. L Zane L Bargelloni T Patarnello 2002 Strategies for microsatellite isolation: a review Mol Ecol 11 1 16
61. Zheng L (1997) Microsatellite mapping of insect genomes. In: Crampton JM, Beard CB, Louis C (eds) Molecular biology of insect disease vectors: a methods manual. Chapman & Hall, London, pp. 321-329
62. L Zheng MQ Benedict AJ Cornel FH Collins FC Kafatos 1996 An integrated genetic map of the African human malaria vector mosquito, Anopheles gambiae Genetics 143 941 952