Integrated genetic map and genetic analysis of a region associated with root traits on the short arm of rye chromosome 1 in bread wheat

Theoretical and Applied Genetics

Volumn 119, Issue 5, 2009, Pages 783-793

  Sharma, Sundrish ^a   Bhat, Prasanna R ^a,b   Ehdaie, Bahman ^a   Close, Timothy J ^a   Lukaszewski, Adam J ^a   Waines, J Giles ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Monsanto Research Centre   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AVERAGE SPACING; BREAD WHEAT; BREAK-POINTS; GENETIC ANALYSIS; GENETIC MAP; MOLECULAR MARKER; PHENOTYPING; QUANTITATIVE TRAITS; RECOMBINATION EVENTS; ROOT BIOMASS; ROOTING ABILITY; WHEAT BREEDING; WHEAT ROOTS;

BIOMASS; CHROMOSOMES; RAPID SOLIDIFICATION;

ROOT LOCI;

ANALYSIS OF VARIANCE; ARTICLE; BREAD; CHROMOSOME MAP; GENETIC MARKER; GENETIC RECOMBINATION; GENETICS; PHENOTYPE; PLANT; PLANT CHROMOSOME; PLANT ROOT; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT; RYE; VARIABLE NUMBER OF TANDEM REPEAT; WHEAT;

ANALYSIS OF VARIANCE; BREAD; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; GENETIC MARKERS; MINISATELLITE REPEATS; PHENOTYPE; PHYSICAL CHROMOSOME MAPPING; PLANT ROOTS; PLANT SHOOTS; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT, HERITABLE; RECOMBINATION, GENETIC; SECALE CEREALE; TRITICUM;

PAVON; SECALE CEREALE; TRITICUM AESTIVUM;

EID: 69249208551     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-1088-0     Document Type: Article

References (47)

1. R Bernatzky SD Tanksley 1986 Toward a saturated linkage map in tomato based on isozymes and random cDNA sequences Genetics 112 887 898
2. Böhm W (1979) Methods of studying root systems. Ecol Stud. pp 188
3. Braun HJ, Payne TS, Morgounov AI, Ginkel Mv, Rajaram S (1998) The challenge: one billion tons of wheat by 2020. In: Proceedings of the Ninth International Wheat Genetics Symposium, Saskatoon, Saskatchewan, Canada, 2-7 August 1998, pp 33-40
4. M Caruso CT Federici ML Roose 2008 EST-SSR markers for asparagus genetic diversity evaluation and cultivar identification Mol Breed 21 195 204
5. MC Champoux G Wang S Sarkarung DJ Mackill JC O'Toole N Huang SR McCouch 1995 Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers Theor Appl Genet 90 969 981
6. Conover W (1980) Practical nonparametric statistics, 2nd edn. Wiley, New York
7. B Ehdaie JG Waines 2006 Determination of a chromosome segment influencing rooting ability in wheat-rye 1BS-1RS recombinant lines J Genet Breed 60 71 76
8. Ehdaie B, Waines JG (2008) Larger root system increases water-nitrogen uptake and grain yield in bread wheat. In: Appels et al. (eds) 11th International Wheat Genetics Symposium 2008. Sydney University Press, Brisbane, QLD, Australia, p 659
9. B Ehdaie RW Whitkus JG Waines 2003 Root biomass, water-use efficiency, and performance of wheat-rye translocations of chromosomes 1 and 2 in spring bread wheat 'Pavon' Crop Sci 43 710 717
10. TR Endo BS Gill 1996 The deletion stocks of common wheat J Hered 87 295 307
11. I Eujayl M Baum W Powell W Erskine E Pehu 1998 A genetic linkage map of lentil (Lens sp.) based on RAPD and AFLP markers using recombinant inbred lines Theor Appl Genet 97 83 89
12. MD Gale KM Devos 1998 Comparative genetics in the grasses Proc Natl Acad Sci USA 95 1971 1974
13. KS Gill BS Gill TR Endo T Taylor 1996 Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat Genetics 144 1883 1891
14. A Graner A Jahoor J Schondelmaier H Siedler K Pillen G Fischbeck G Wenzel RF Herrmann 1991 Construction of an RFLP map of barley Theor Appl Genet 83 250 256
15. B Hackauf S Rudd Van der Voort JR T Miedaner P Wehling 2009 Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome Theor Appl Genet 118 371 384
16. T Helentjaris M Slocum S Wright A Schaefer J Nienhuis 1986 Construction of genetic linkage maps in maize and tomato using restriction fragment length polymorphisms Theor Appl Genet 72 761 769
17. AWv Heusden JWv Ooijen R Vrielink-van Ginkel WHJ Verbeek WA Wietsma C Kik 2000 A genetic map of an interspecific cross in Allium based on amplified fragment length polymorphism (AFLPTM) markers Theor Appl Genet 100 118 126
18. W Kim JW Johnson PS Baenziger AJ Lukaszewski CS Gaines 2004 Agronomic effect of wheat-rye translocation carrying rye chromatin (1R) from different sources Crop Sci 44 1254 1258
19. G Künzel L Korzun A Meister 2000 Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints Genetics 154 397 412
20. TY Lin YY Kao S Lin RF Lin CM Chen CH Huang CK Wang YZ Lin CC Chen 2001 A genetic linkage map of Nicotiana plumbaginifolia/Nicotiana longiflora based on RFLP and RAPD markers Theor Appl Genet 103 905 911
21. AJ Lukaszewski 1993 Reconstruction in wheat of complete chromosomes 1B and 1R from the 1RS.1BL translocation of 'Kavkaz' origin Genome 36 821 824
22. AJ Lukaszewski 2000 Manipulation of the 1RS.1BL translocation in wheat by induced homoeologous recombination Crop Sci 40 216 225
23. AJ Lukaszewski K Rybka V Korzun SV Malyshev B Lapinski R Whitkus 2004 Genetic and physical mapping of homoeologous recombination points involving wheat chromosome 2B and rye chromosome 2R Genome 47 36 45
24. R Mago W Spielmeyer J Lawrence S Lagudah G Ellis A Pryor 2002 Identification and mapping of molecular markers linked to rust resistance genes located on chromosome 1RS of rye using wheat-rye translocation lines Theor Appl Genet 104 1317 1324
25. Manske GGB, Vlek PLG (2002) Root architecture-wheat as a model plant. Plant roots: the hidden half. Marcel Dekker Inc, New York, pp 249-259
26. WS Oetting HK Lee DJ Flanders GL Wiesner TA Sellers RA King 1995 Linkage analysis with multiplexed short tandem repeat polymorphisms using infrared fluorescence and M13 tailed primers Genomics 30 450 458
27. JO Owuoche RG Sears GL Brown-Guedira BS Gill AK Fritz 2003 Heterotic effects of wheat-rye chromosomal translocations on agronomic traits of hybrid wheat (Triticum aestivum L.) under an adequate moisture regime Euphytica 132 67 77
28. JH Peng NLV Lapitan 2005 Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers Funct Integr Genomics 5 80 96
29. JH Peng H Zadeh GR Lazo JP Gustafson S Chao OD Anderson LL Qi B Echalier BS Gill M Dilbirligi D Sandhu KS Gill RA Greene ME Sorrells ED Akhunov J Dvorak AM Linkiewicz J Dubcovsky KG Hossain V Kalavacharla SF Kianian AA Mahmoud Miftahudin EJ Conley JA Anderson MS Pathan 2004 Chromosome bin map of expressed sequence tags in homoeologous group 1 of hexaploid wheat and homoeology with rice and Arabidopsis Genetics 168 609 623 (Pubitemid 39491443)
30. AH Price AD Tomos DS Virk 1997 Genetic dissection of root growth in rice (Oryza sativa L.). I: a hydroponic screen Theor Appl Genet 95 132 142
31. AH Price KA Steele BJ Moore PB Barraclough LJ Clark 2000 A combined RFLP and AFLP linkage map of upland rice (Oryza sativa L.) used to identify QTLs for root-penetration ability Theor Appl Genet 100 49 56
32. D Quade 1979 Using weighted rankings in the analysis of complete blocks with additive block effects J Am Stat Assoc 74 680 683
33. MS Röder V Korzun K Wendehake J Plaschke MH Tixier P Leroy MW Ganal 1998 A microsatellite map of wheat Genetics 149 2007 2023
34. Rozen S, Skaletsky HJ (2000) Primer 3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365-386
35. Snape JW, Foulkes MJ, Simmonds J, Leverington M, Fish LJ, Wang Y, Ciavarrella M (2007) Dissecting gene × environmental effects on wheat yields via QTL and physiological analysis Euphytica. Springer Science + Business Media, Dordrecht Netherlands, pp 401-408
36. DJ Somers R Kirkpatrick M Moniwa A Walsh 2003 Mining single-nucleotide polymorphisms from hexaploid wheat ESTs Genome 46 431 437
37. ME Sorrells Rota Ml CE Bermudez-Kandianis RA Greene R Kantety JD Munkvold Miftahudin A Mahmoud XF Ma PJ Gustafson LL Qi B Echalier BS Gill DE Matthews GR Lazo S Chao OD Anderson H Edwards AM Linkiewicz J Dubcovsky ED Akhunov J Dvorak DH Zhang HT Nguyen JH Peng NLV Lapitan 2003 Comparative DNA sequence analysis of wheat and rice genomes Genome Res 13 1818 1827
38. Steel RGD, Torrie JH, Dickey DA (1997) Principles and procedures of statistics: a biometrical approach, 3rd edn. McGraw-Hill, Inc., New York 666
39. R Tuberosa MC Sanguineti P Landi MM Giuliani S Salvi S Conti 2002 Identification of QTLs for root characteristics in maize grown in hydroponics and analysis of their overlap with QTLs for grain yield in the field at two water regimes Plant Mol Biol 48 697 712 (Pubitemid 34415980)
40. Y Uga K Okuno M Yano 2008 Qtls underlying natural variation in stele and xylem structures of rice root Breed Sci 58 7 14
41. RL Villareal S Rajaram A Mujeeb-Kazi ED Toro 1991 The effect of chromosome 1B/1R translocation on the yield potential of certain spring wheats (Triticum aestivum L.) Plant Breed 106 77 81
42. RL Villareal Toro Ed A Mujeeb-Kazi S Rajaram 1995 The 1BL/1RS chromosome translocation effect on yield characteristics in a Triticum aestivum L. cross Plant Breed 114 497 500
43. Waines JG, Ehdaie B, Sharma S (2004) Effect of origin of 1RS translocation on root biomass in wheats. Crop Science Society of America 49th annual meeting program, p 96
44. Y Weng P Azhaguvel RN Devkota JC Rudd 2007 PCR-based markers for detection of different sources of 1AL.1RS and 1BL.1RS wheat-rye translocations in wheat background Plant Breed 126 482 486
45. P Winter AM Benko-Iseppon B Huttel M Ratnaparkhe A Tullu G Sonnante T Pfaff M Tekeoglu D Santra VJ Sant PN Rajesh G Kahl FJ Muehlbauer 2000 A linkage map of the chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum × C. reticulatum cross: localization of resistance genes for Fusarium wilt races 4 and 5 Theor Appl Genet 101 1155 1163
46. R Yadav B Courtois N Huang G McLaren 1997 Mapping genes controlling root morphology and root distribution in a doubled-haploid population of rice Theor Appl Genet 94 619 632
47. Zeller FJ, Hsam SLK (1984) Broadening the genetic variability of cultivated wheat by utilizing rye chromatin. In: Sakomoto S (ed) 6th International Wheat Genetics Symposium, Plant Germplasm Institute, Koyoto University, Koyoto, Japan, pp 161-173