메뉴 건너뛰기




Volumn 78, Issue 3, 2009, Pages 331-338

Simplified amplified-fragment length polymorphism method for genotyping Mycobacterium tuberculosis isolates

Author keywords

AFLP; Amplified fragment length polymorphism; Genotyping methods; IS6110 restriction fragment length polymorphism; IS6110 RFLP; Mycobacterium tuberculosis

Indexed keywords

DNA POLYMERASE; GENOMIC DNA; MAGNESIUM ION; PROTEIN XHOL; RESTRICTION ENDONUCLEASE; UNCLASSIFIED DRUG;

EID: 68949159802     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2009.07.007     Document Type: Article
Times cited : (2)

References (29)
  • 2
    • 1842455190 scopus 로고    scopus 로고
    • In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction
    • Bikandi J., San Millán R., Rementeria A., and Garaizar J. In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction. Bioinformatics 20 (2004) 798-799
    • (2004) Bioinformatics , vol.20 , pp. 798-799
    • Bikandi, J.1    San Millán, R.2    Rementeria, A.3    Garaizar, J.4
  • 3
    • 0036847693 scopus 로고    scopus 로고
    • Quality assessment of Mycobacterium tuberculosis genotyping in a large laboratory network
    • Braden C.R., Crawford J.T., and Schable B.A. Quality assessment of Mycobacterium tuberculosis genotyping in a large laboratory network. Emerg. Infect. Dis. 8 (2002) 1210-1215
    • (2002) Emerg. Infect. Dis. , vol.8 , pp. 1210-1215
    • Braden, C.R.1    Crawford, J.T.2    Schable, B.A.3
  • 6
    • 0036848932 scopus 로고    scopus 로고
    • Genotype analysis of Mycobacterium tuberculosis isolates from a sentinel surveillance population
    • Cowan L.S., and Crawford J.T. Genotype analysis of Mycobacterium tuberculosis isolates from a sentinel surveillance population. Emerg. Infect. Dis. 8 (2002) 1294-1302
    • (2002) Emerg. Infect. Dis. , vol.8 , pp. 1294-1302
    • Cowan, L.S.1    Crawford, J.T.2
  • 7
    • 0346902952 scopus 로고    scopus 로고
    • Genotyping in contact investigations: a CDC perspective
    • Crawford J.T. Genotyping in contact investigations: a CDC perspective. Int. J. Tuberc. Lung. Dis. 7 (2003) S453-457
    • (2003) Int. J. Tuberc. Lung. Dis. , vol.7
    • Crawford, J.T.1
  • 8
    • 0036849906 scopus 로고    scopus 로고
    • National tuberculosis genotyping and surveillance network: design and methods
    • Crawford J.T., Braden C.R., Schable B.A., and Onorato I.M. National tuberculosis genotyping and surveillance network: design and methods. Emerg. Infect. Dis. 8 (2002) 1192-1196
    • (2002) Emerg. Infect. Dis. , vol.8 , pp. 1192-1196
    • Crawford, J.T.1    Braden, C.R.2    Schable, B.A.3    Onorato, I.M.4
  • 9
    • 0034006265 scopus 로고    scopus 로고
    • Genome-sequence-based fluorescent amplified-fragment length polymorphism analysis of Mycobacterium tuberculosis
    • Goulding J.N., Stanley J., Saunders N., and Arnold C. Genome-sequence-based fluorescent amplified-fragment length polymorphism analysis of Mycobacterium tuberculosis. J. Clin. Microbiol. 38 (2000) 1121-1126
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 1121-1126
    • Goulding, J.N.1    Stanley, J.2    Saunders, N.3    Arnold, C.4
  • 10
    • 68949118102 scopus 로고    scopus 로고
    • Levaduras metilotróficas modificadas genéticamente para la producción y secreción de hormona del crecimiento humano
    • Guerrero-Olazarán, M., Barrera-Saldaña, H.A., Viader-Salvadó, J.M., July 2001. Levaduras metilotróficas modificadas genéticamente para la producción y secreción de hormona del crecimiento humano. MX patent 203,194.
    • (2001) MX patent , vol.203 , pp. 194
    • Guerrero-Olazarán, M.1    Barrera-Saldaña, H.A.2    Viader-Salvadó, J.M.3    July4
  • 11
    • 68949102219 scopus 로고    scopus 로고
    • Modified methylotrophic Pichia pastoris yeast which secretes human growth hormone
    • U.S. patent 6,342,375 B1
    • Guerrero-Olazarán M., Barrera-Saldaña, H.A., Viader-Salvadó, J.M., January 2002. Modified methylotrophic Pichia pastoris yeast which secretes human growth hormone. U.S. patent 6,342,375 B1.
    • (2002)
    • Guerrero-Olazarán, M.1    Barrera-Saldaña, H.A.2    Viader-Salvadó, J.M.3    January4
  • 12
    • 0029923481 scopus 로고    scopus 로고
    • High and low annealing temperatures increase both specificity and yield in touchdown and stepdown PCR
    • Hecker K.H., and Roux K.H. High and low annealing temperatures increase both specificity and yield in touchdown and stepdown PCR. BioTechiniques 20 (1996) 478-485
    • (1996) BioTechiniques , vol.20 , pp. 478-485
    • Hecker, K.H.1    Roux, K.H.2
  • 13
    • 0023738045 scopus 로고    scopus 로고
    • Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity
    • Hunter P.R., and Gaston M.A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26 (1998) 2465-2466
    • (1998) J. Clin. Microbiol. , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 14
    • 0033775440 scopus 로고    scopus 로고
    • Evaluation of amplified fragment length polymorphism analysis for inter- and intraspecific differentiation of Mycobacterium bovis, M. tuberculosis, and M. ulcerans
    • Huys G., Rigouts L., Chemlal K., Portaels F., and Swings J. Evaluation of amplified fragment length polymorphism analysis for inter- and intraspecific differentiation of Mycobacterium bovis, M. tuberculosis, and M. ulcerans. J. Clin. Microbiol. 38 (2000) 3675-3680
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 3675-3680
    • Huys, G.1    Rigouts, L.2    Chemlal, K.3    Portaels, F.4    Swings, J.5
  • 15
  • 16
    • 84871086678 scopus 로고
    • U.S. Department of Health and Human Services, Washington, D.C no. 86-8230
    • Kent P.T., and Kubica G.P. Public Health Mycobacteriology: a Guide for the Level III Laboratory. U.S. Department of Health and Human Services publication (1985), U.S. Department of Health and Human Services, Washington, D.C no. 86-8230
    • (1985) U.S. Department of Health and Human Services publication
    • Kent, P.T.1    Kubica, G.P.2
  • 17
    • 34548179071 scopus 로고    scopus 로고
    • Combined use of amplified fragment length polymorphism and IS6110-RFLP in fingerprinting clinical isolates of Mycobacterium tuberculosis from Kerala, South India
    • Krishnan M.Y., Radhakrishnan I., Joseph B.V., Madhavi Latha G.K., Ajay Kumar R., and Mundayoor S. Combined use of amplified fragment length polymorphism and IS6110-RFLP in fingerprinting clinical isolates of Mycobacterium tuberculosis from Kerala, South India. BMC Infect. Dis. 7 (2007) 86
    • (2007) BMC Infect. Dis. , vol.7 , pp. 86
    • Krishnan, M.Y.1    Radhakrishnan, I.2    Joseph, B.V.3    Madhavi Latha, G.K.4    Ajay Kumar, R.5    Mundayoor, S.6
  • 18
    • 0001845791 scopus 로고
    • AFLP: a novel PCR-based assay for plant and bacterial DNA fingerprinting
    • Lin J.J., and Kuo J. AFLP: a novel PCR-based assay for plant and bacterial DNA fingerprinting. Focus. 17 (1995) 66-70
    • (1995) Focus. , vol.17 , pp. 66-70
    • Lin, J.J.1    Kuo, J.2
  • 20
    • 0035056411 scopus 로고    scopus 로고
    • Implications of low frequency of IS6110 in fingerprinting field isolates of Mycobacterium tuberculosis from Kerala, India
    • Radhakrishnan I.K.M.Y., Kumar R.A., and Mundayoor S. Implications of low frequency of IS6110 in fingerprinting field isolates of Mycobacterium tuberculosis from Kerala, India. J. Clin. Microbiol. 39 (2001) 1683
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 1683
    • Radhakrishnan, I.K.M.Y.1    Kumar, R.A.2    Mundayoor, S.3
  • 21
    • 10744233035 scopus 로고    scopus 로고
    • Amplified-fragment length polymorphism as a complement to IS6110-based restriction fragment length polymorphism analysis for molecular typing of Mycobacterium tuberculosis
    • Ruiz M., Rodríguez J.C., Rodríguez-Valera F., and Royo G. Amplified-fragment length polymorphism as a complement to IS6110-based restriction fragment length polymorphism analysis for molecular typing of Mycobacterium tuberculosis. J. Clin. Microbiol. 41 (2003) 4820-4822
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 4820-4822
    • Ruiz, M.1    Rodríguez, J.C.2    Rodríguez-Valera, F.3    Royo, G.4
  • 23
    • 0036840238 scopus 로고    scopus 로고
    • Experimental versus in silico fluorescent amplified fragment length polymorphism analysis of Mycobacterium tuberculosis: improved typing with an extended fragment range
    • Sims E.J., Goyal M., and Arnold C. Experimental versus in silico fluorescent amplified fragment length polymorphism analysis of Mycobacterium tuberculosis: improved typing with an extended fragment range. J. Clin. Microbiol. 40 (2002) 4072-4076
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 4072-4076
    • Sims, E.J.1    Goyal, M.2    Arnold, C.3
  • 25
    • 0032907111 scopus 로고    scopus 로고
    • Modification of the AFLP protocol applied to honey bee (Apis mellifera L.) DNA
    • Suazo A., and Hall H.G. Modification of the AFLP protocol applied to honey bee (Apis mellifera L.) DNA. Biotechniques 26 (1999) 704-709
    • (1999) Biotechniques , vol.26 , pp. 704-709
    • Suazo, A.1    Hall, H.G.2
  • 28
    • 0027257446 scopus 로고
    • Comparison of various repetitive DNA elements as genetic markers for strain differentiation and epidemiology of Mycobacterium tuberculosis
    • van Soolingen D., de Haas P.E., Hermans P.W., Groenen P.M., and van Embden J.D. Comparison of various repetitive DNA elements as genetic markers for strain differentiation and epidemiology of Mycobacterium tuberculosis. J. Clin. Microbiol. 31 (1993) 1987-1995
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 1987-1995
    • van Soolingen, D.1    de Haas, P.E.2    Hermans, P.W.3    Groenen, P.M.4    van Embden, J.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.