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Volumn 78, Issue 3, 2009, Pages 351-353

A generally applicable assay for the quantification of inhibitory effects on PCR

Author keywords

Environmental DNA; Inhibition; Quantitative PCR

Indexed keywords

BACTERIAL DNA; CALCIUM CARBONATE; HUMIC ACID; MACROGOL 8000; MAGNESIUM; PHOSPHORUS; POTASSIUM; POVIDONE; SEPHADEX; SEPHAROSE; TANNIN;

EID: 68949099459     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2009.06.010     Document Type: Article
Times cited : (31)

References (22)
  • 1
    • 34250710642 scopus 로고    scopus 로고
    • World reference base for soil resources 2006: a framework for international classification, correlation and communication
    • Food and Agriculture Organization of the United Nations (FAO), Rome
    • Anonymous. World reference base for soil resources 2006: a framework for international classification, correlation and communication. World Soil Resources Reports vol. 103 (2006), Food and Agriculture Organization of the United Nations (FAO), Rome
    • (2006) World Soil Resources Reports , vol.103
  • 2
    • 34447559993 scopus 로고    scopus 로고
    • Improved purification and PCR amplification of DNA from environmental samples
    • Arbeli Z., and Fuentes C.L. Improved purification and PCR amplification of DNA from environmental samples. FEMS Microbiol. Lett. 272 (2007) 269-275
    • (2007) FEMS Microbiol. Lett. , vol.272 , pp. 269-275
    • Arbeli, Z.1    Fuentes, C.L.2
  • 3
    • 0035065898 scopus 로고    scopus 로고
    • A strategy for optimizing quality and quantity of DNA extracted from soil
    • Bürgmann H., Pesaro M., Widmer F., and Zeyer J. A strategy for optimizing quality and quantity of DNA extracted from soil. J. Microbiol. Methods 45 (2001) 7-20
    • (2001) J. Microbiol. Methods , vol.45 , pp. 7-20
    • Bürgmann, H.1    Pesaro, M.2    Widmer, F.3    Zeyer, J.4
  • 4
    • 33947714467 scopus 로고    scopus 로고
    • Detection and quantification of Entomophaga maimaiga resting spores in forest soil using real-time PCR
    • Castrillo L.A., Thomsen L., Juneja P., and Hajek A.E. Detection and quantification of Entomophaga maimaiga resting spores in forest soil using real-time PCR. Mycol. Res. 111 (2007) 324-331
    • (2007) Mycol. Res. , vol.111 , pp. 324-331
    • Castrillo, L.A.1    Thomsen, L.2    Juneja, P.3    Hajek, A.E.4
  • 5
    • 22144470189 scopus 로고    scopus 로고
    • Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays
    • Fierer N., Jackson J.A., Vilgalys R., and Jackson R.B. Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Appl. Environ. Microbiol. 71 (2005) 4117-4120
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 4117-4120
    • Fierer, N.1    Jackson, J.A.2    Vilgalys, R.3    Jackson, R.B.4
  • 6
    • 0028936646 scopus 로고
    • Alterations in sample preparation increase sensitivity of PCR assay for diagnosis of chancroid
    • Johnson S.R., Martin D.H., Cammarata C., and Morse S.A. Alterations in sample preparation increase sensitivity of PCR assay for diagnosis of chancroid. J. Clin. Microbiol. 33 (1995) 1036-1038
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 1036-1038
    • Johnson, S.R.1    Martin, D.H.2    Cammarata, C.3    Morse, S.A.4
  • 8
    • 0030048084 scopus 로고    scopus 로고
    • Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein
    • Kreader C.A. Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Appl. Environ. Microbiol. 62 (1996) 1102-1106
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1102-1106
    • Kreader, C.A.1
  • 9
    • 0036008790 scopus 로고    scopus 로고
    • Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis
    • LaMontagne M.G., Michel F.C., Holden P.A., and Reddy C.A. Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis. J. Microbiol. Methods 49 (2002) 255-264
    • (2002) J. Microbiol. Methods , vol.49 , pp. 255-264
    • LaMontagne, M.G.1    Michel, F.C.2    Holden, P.A.3    Reddy, C.A.4
  • 10
    • 0035129246 scopus 로고    scopus 로고
    • Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments
    • Miller D.N. Evaluation of gel filtration resins for the removal of PCR-inhibitory substances from soils and sediments. J. Microbiol. Methods 44 (2001) 49-58
    • (2001) J. Microbiol. Methods , vol.44 , pp. 49-58
    • Miller, D.N.1
  • 11
    • 0032703237 scopus 로고    scopus 로고
    • Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
    • Miller D.N., Bryant J.E., Madsen E.L., and Ghiorse W.C. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl. Environ. Microbiol. 65 (1999) 4715-4724
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4715-4724
    • Miller, D.N.1    Bryant, J.E.2    Madsen, E.L.3    Ghiorse, W.C.4
  • 13
    • 0027368569 scopus 로고
    • Use of polymerase chain-reaction and electroporation of Escherichia coli to monitor the persistence of extracellular plasmid DNA introduced into natural soils
    • Romanowski G., Lorenz M.G., and Wackernagel W. Use of polymerase chain-reaction and electroporation of Escherichia coli to monitor the persistence of extracellular plasmid DNA introduced into natural soils. Appl. Environ. Microbiol. 59 (1993) 3438-3446
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3438-3446
    • Romanowski, G.1    Lorenz, M.G.2    Wackernagel, W.3
  • 14
    • 62549155265 scopus 로고    scopus 로고
    • Effects of biological and chemical insect control agents on fungal community structures in soil microcosms
    • Schwarzenbach K., Enkerli J., and Widmer F. Effects of biological and chemical insect control agents on fungal community structures in soil microcosms. Appl. Soil Ecol. 42 (2009) 54-62
    • (2009) Appl. Soil Ecol. , vol.42 , pp. 54-62
    • Schwarzenbach, K.1    Enkerli, J.2    Widmer, F.3
  • 15
    • 0026292515 scopus 로고
    • Characterization, differentiation, and classification of humic substances by fluorescence spectroscopy
    • Senesi N., Miano T.M., Provenzano M.R., and Brunetti G. Characterization, differentiation, and classification of humic substances by fluorescence spectroscopy. Soil Sci. 152 (1991) 259-271
    • (1991) Soil Sci. , vol.152 , pp. 259-271
    • Senesi, N.1    Miano, T.M.2    Provenzano, M.R.3    Brunetti, G.4
  • 16
    • 33645386797 scopus 로고    scopus 로고
    • Changes of humic substances characteristics from forested to cultivated soils in Ethiopia
    • Spaccini R., Mbagwu J.S.C., Conte P., and Piccolo A. Changes of humic substances characteristics from forested to cultivated soils in Ethiopia. Geoderma 132 (2006) 9-19
    • (2006) Geoderma , vol.132 , pp. 9-19
    • Spaccini, R.1    Mbagwu, J.S.C.2    Conte, P.3    Piccolo, A.4
  • 17
    • 0027202733 scopus 로고
    • Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast
    • Tebbe C.C., and Vahjen W. Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast. Appl. Environ. Microbiol. 59 (1993) 2657-2665
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2657-2665
    • Tebbe, C.C.1    Vahjen, W.2
  • 19
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
    • von Wintzingerode F., Gobel U.B., and Stackebrandt E. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21 (1997) 213-229
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • von Wintzingerode, F.1    Gobel, U.B.2    Stackebrandt, E.3
  • 20
    • 0033888305 scopus 로고    scopus 로고
    • Purification and characterization of a common soil component which inhibits the polymerase chain reaction
    • Watson R.J., and Blackwell B. Purification and characterization of a common soil component which inhibits the polymerase chain reaction. Can. J. Microbiol. 46 (2000) 633-642
    • (2000) Can. J. Microbiol. , vol.46 , pp. 633-642
    • Watson, R.J.1    Blackwell, B.2
  • 21
    • 0030466828 scopus 로고    scopus 로고
    • Sensitive detection of transgenic plant marker gene persistence in soil microcosms
    • Widmer F., Seidler R.J., and Watrud L.S. Sensitive detection of transgenic plant marker gene persistence in soil microcosms. Mol. Ecol. 5 (1996) 603-613
    • (1996) Mol. Ecol. , vol.5 , pp. 603-613
    • Widmer, F.1    Seidler, R.J.2    Watrud, L.S.3
  • 22
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63 (1997) 3741-3751
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3741-3751
    • Wilson, I.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.