The proximity between C-termini of dimeric vacuolar H+- pyrophosphatase determined using atomic force microscopy and a gold nanoparticle technique

FEBS Journal

Volumn 276, Issue 16, 2009, Pages 4381-4394

  Liu, Tseng Huang ^a   Hsu, Shen Hsing ^a   Huang, Yun Tzu ^a   Lin, Shih Ming ^a   Huang, Tsu Wei ^a   Chuang, Tzu Han ^a   Fan, Shih Kang ^b   Fu, Chien Chung ^a   Tseng, Fan Gang ^a   Pan, Rong Long ^a  

^a NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^b NATIONAL CHIAO TUNG UNIVERSITY   (Taiwan)

Author keywords

Atomic force microscopy; Proton translocation; Tonoplast; Vacuolar H + pyrophosphatase; Vacuole

Indexed keywords

GOLD NANOPARTICLE; INORGANIC PYROPHOSPHATASE; LIPOSOME; UNCLASSIFIED DRUG; VASCOLAR HYDRONIUM TRANSLOCATING INORGANIC PYROPHOSPHATASE;

ARTICLE; ATOMIC FORCE MICROSCOPY; CYTOSOL; DIMERIZATION; ENZYME ASSAY; HYDROLYSIS; LIPID BILAYER; NONHUMAN; PRIORITY JOURNAL; PROTON TRANSPORT; TONOPLAST; TRANSMISSION ELECTRON MICROSCOPY;

ANTIBODIES; GOLD; INORGANIC PYROPHOSPHATASE; LIPID BILAYERS; METAL NANOPARTICLES; MICROSCOPY, ATOMIC FORCE; PLANT PROTEINS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, QUATERNARY; VACUOLES;

EID: 68749094300     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2009.07146.x     Document Type: Article

References (44)

1. +-pyrophosphatase. Biochim Biophys Acta 1465, 37 51.
2. Tzeng CM, Yang CY, Yang SJ, Jiang SS, Kuo SY, Hung SS, Ma JT Pan RL (1996) Subunit structure of vacuolar proton pyrophosphatase as determined by radiation inactivation. Biochem J 316, 143 147.
3. Drozdowicz YM Rea PA (2001) Vacuolar proton-pyrophosphatases: from the evolutionary backwaters into the mainstream. Trends Plant Sci 6, 206 211.
4. +-translocating pyrophosphatases: a new category of ion translocase. Trends Biochem Sci 17, 348 353.
5. +-pumping inorganic pyrophosphatase (studies using ligand protection from covalent inhibitors). Plant Physiol 111, 195 202.
6. 2+-dependent, cation-stimulated inorganic pyrophosphatase associated with vacuoles isolated from storage roots of red beet (Beta vulgaris L.). Planta 153, 150 155.
7. 2+ and immunological comparison with other inorganic pyrophosphatases. Eur J Biochem 196, 11 17.
8. +- pyrophosphatase. A simple three-state model. FEBS Lett 327, 199 202.
9. +- pyrophosphatase. Arch Biochem Biophys 442, 206 213.
10. +-pyrophosphatase as determined by high hydrostatic pressure. Biochem J 331, 395 402.
11. +-translocating inorganic pyrophosphatase of plant vacuoles. Biochem Biophys Res Commun 168, 1157 1162.
12. +-pyrophosphatase from Beta vulgaris L. Functional sizes for substrate hydrolysis and for H+ transport. Biochem J 283, 493 497.
13. + into reconstituted proteoliposomes. J Biol Chem 269, 6725 6758.
14. López-Marqués RL, Pérez-Castiñeira JR, Buch-Pedersen JB, Marco S, Rigaud JL, Palmaren MG Serrano A (2005) Large-scale purification of the proton pumping pyrophosphatase from Thermotoga maritina: a 'Hot-Solve' method for isolation of recombinant thermophilic membrane proteins. Biochim Biophys Acta 1716, 69 76.
15. Dufrene YF Lee GU (2000) Advances in the characterization of supported lipid films with the atomic force microscope. Biochim Biophys Acta 1509, 14 41.
16. Rinia HA de Kruijff B (2001) Imaging domains in model membranes with atomic force microscopy. FEBS Lett 504, 194 199.
17. Yuan C Johnston LJ (2001) Atomic force microscopy studies of ganglioside GM1 domains in phosphatidylcholine and phosphatidylcholine/cholesterol bilayers. Biophys J 81, 1059 1069.
18. Slade A, Luh J, Ho S Yip CM (2002) Single molecule imaging of supported planar lipid bilayer-reconstituted human insulin receptors by in situ scanning probe microscopy. J Struct Biol 137, 283 291.
19. Saslowsky DE, Lawrence J, Ren X, Brown DA, Henderson RM Edwardson JM (2002) Placental alkaline phosphatase is efficiently targeted to rafts in supported lipid bilayers. J Biol Chem 277, 26966 26970.
20. Milhiet PE, Giocondi MC, Baghdadi O, Ronzon F, Roux B LeGrimellec C (2002) Spontaneous insertion and partitioning of alkaline phosphatase into model lipid rafts. EMBO Rep 3, 485 490.
21. Liu LN, Aartsma TJ Frese RN (2008) Dimers of light-harvesting complex 2 from Rhodobacter sphaeroides characterized in reconstituted 2D crystals with atomic force microscopy. FEBS J 275, 3157 3166.
22. Bahatyrova S, Frese RN, Siebert CA, Olsen JD, van Der Werf KO, van Grondelle R, Niederman RA, Bullough PA, Otto C Hunter CN (2004) The native architecture of a photosynthetic membrane. Nature 430, 1058 1062.
23. Fotiadis D, Liang Y, Filipek S, Saperstein DA, Engel A Palczewski K (2003) Atomic-force microscopy: rhodopsin dimers in native disc membranes. Nature 421, 127 128.
24. Schneider SW, Lärmer J, Henderson RM Oberleithner H (1998) Molecular weights of individual proteins correlate with molecular volumes measured by atomic force microscopy. Pflügers Arch 435, 362 367.
25. Geisse NA, Cover TL, Henderson RM Edwardson JM (2004) Targeting of Helicobacter pylori vacuolating toxin to lipid raft membrane domains analysed by atomic force microscopy. Biochem J 381, 911 917.
26. Gallová J, Uhríková D, Islamov A, Kuklin A Balgavý P (2004) Effect of cholesterol on the bilayer thickness in unilamellar extruded DLPC and DOPC liposomes. Gen Physiol Biophys 23, 113 128.
27. Hörber JKH Miles MJ (2003) Scanning probe evolution in biology. Science 302, 1002 1005.
28. Engel A Müller DJ (2000) Observing single biomolecules at work with the atomic force microscope. Nat Struct Biol 7, 715 718.
29. Schneider S, Folprecht G, Krohne G Oberleithner H (1995) Immunolocalization of lamins and nuclear pore complex proteins by atomic force microscopy. Pflügers Arch 430, 795 801.
30. Rapp M, Seppälä S, Granseth E von Heijne G (2007) Emulating membrane protein evolution by rational design. Science 315, 1282 1284.
31. Brekke OH, Michaelsen TE Sandlie I (1995) The structural requirements for complement activation by IgG: does it hinge on the hinge? Immunol Today 16, 85 90.
32. +-pyrophosphatase of mung bean with peptide antibodies. J Biochem 122, 883 889.
33. +-ATPase from etiolated mung bean seedlings. Plant Physiol 109, 1125 1127.
34. +-pyrophosphatase. Biochim Biophys Acta 1608, 190 199.
35. +-pyrophosphatase: necessity of Cys634 for inhibition by maleimides but not catalysis. J Biol Chem 270, 2630 2635.
36. Fiske CH Subbarow Y (1925) The colorimetric determination of phosphorus. J Biol Chem 66, 375 400.
37. Wang MY, Lin YH, Chow WM, Chung TP Pan RL (1989) Purification and characterization of tonoplast ATPase from etiolated mung bean seedlings. Plant Physiol 90, 475 481.
38. Bradford M (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding. Anal Biochem 72, 248 254.
39. Rea PA Turner JC (1990) Tonoplast adenosine triphosphatase and inorganic pyrophosphatase. In Methods in Plant Biochemistry, vol. 3 (Lea PJ ed pp 385 405. Academic Press, London.
40. Rottenberg H (1979) The measurement of membrane potential and deltapH in cells, organelles, and vesicles. In Methods in Enzymology, vol. 55 (Fleischer S Packer L eds pp 547 569. Academic Press, New York.
41. Clerc S Barenholz Y (1998) A quantitative model for using acridine orange as a transmembrane pH gradient probe. Anal Biochem 259, 104 111.
42. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (Lond) 222, 680 685.
43. 2+-sensitive channel in reconstituted lipid vesicles. Biochemistry 38, 11189 11196.
44. Edstrom RD, Meinke MH, Yang R, Yang X, Elings V Evans DF (1990) Direct visualization of phosphorylase-phosphorylase kinase complexes by scanning tunneling and atomic force microscopy. Biophys J 58, 1437 1448.