Heavy metal induced DNA changes in aquatic macrophytes: Random amplified polymorphic DNA analysis and identification of sequence characterized amplified region marker

Journal of Environmental Sciences

Volumn 21, Issue 5, 2009, Pages 686-690

  Gupta, Meetu ^a   Sarin, Neera Bhalla ^b  

^a JAMIA MILLIA ISLAMIA CENTRAL UNIVERSITY   (India)

^b JAWAHARLAL NEHRU UNIVERSITY   (India)

Author keywords

Ceratophyllum demersum; DNA polymorphism, SCAR marker; Hydrilla verticillata; RAPD

Indexed keywords

AQUATIC MACROPHYTES; AQUATIC PLANTS; BIO-INDICATORS; CERATOPHYLLUM DEMERSUM; CLONING AND SEQUENCING; CONCENTRATION OF; DNA POLYMORPHISM, SCAR MARKER; DNA PROFILES; ENVIRONMENTAL POLLUTIONS; GENETIC TOXICITY; GENOMIC TEMPLATE STABILITY; HYDRILLA VERTICILLATA; IN-BAND; PROTEIN CONTENTS; QUALITATIVE MEASUREMENTS; RANDOM AMPLIFIED POLYMORPHIC DNA ANALYSIS; RANDOMLY AMPLIFIED POLYMORPHIC DNA; RAPD; SEQUENCE CHARACTERIZED AMPLIFIED REGION MARKERS;

AQUACULTURE; CHLOROPHYLL; CLONING; DNA; FORESTRY; MERCURY (METAL); NUCLEIC ACIDS; POLYMORPHISM; PORPHYRINS;

GENES;

DNA; HEAVY METAL; PRIMER DNA;

AQUATIC PLANT; DNA; GENETIC MARKER; HEAVY METAL; MACROPHYTE; POLYMORPHISM;

AGAR GEL ELECTROPHORESIS; ARTICLE; DNA DAMAGE; DRUG EFFECT; GENETICS; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PLANT; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA;

BASE SEQUENCE; CLONING, MOLECULAR; DNA; DNA DAMAGE; DNA PRIMERS; ELECTROPHORESIS, AGAR GEL; METALS, HEAVY; PLANTS; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE;

CERATOPHYLLUM DEMERSUM; HYDRILLA VERTICILLATA;

EID: 68649086433     PISSN: 10010742     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1001-0742(08)62324-4     Document Type: Article

References (21)

1. Angelis K.J., Mcguffie M., Menke M., and Schubert I. Adaption to alkylation damage in DNA measured by the comet assay. Environmental and Molecular Mutagenesis 36 (2000) 146-150
2. Arnon D.E. Copper enzymes in isolated chloroplast, polyphenol oxidase in Beta vulgaris. Plant Physiology 24 (1949) 1-15
3. Atienzar F.A., Conradi M., Evenden A.J., Jha A.N., and Depledge M.H. Qualitative assessment of genotoxicity using random amplified polymorphic DNA: comparison of genomic template stability with key fitness parameters in Daphnia magna to benzo[a]pyrene. Environmental Toxicology and Chemistry 18 (1999) 2275-2282
4. Atienzar F.A., Cordi B., Donkin M.B., Evenden A.J., Jha A.N., and Depledge M.H. Comparison of ultraviolet-induced genotoxicity detected by random amplified polymorphic DNA with chlorophyll fluorescence and growth in a marine macroalgae, Palmaria palmate. Aquatic Toxicology 50 (2000) 1-12
5. Atienzar F.A., Cheung V.V., Jha A.N., and Depledge M.H. Fitness parameters and DNA effects are sensitive indicators of copper-induced toxicity in Daphnia magna. Environmental Toxicology 59 (2001) 241-250
6. Bradford A. A rapid and sensitive method for quantitation of microgram quantities of protein utilizing the principle of protein dye-binding. Analytical Biochemistry 72 (1976) 248-254
7. Conte C., Mutti I., Puglisi P., Ferrarini A., Regina G., Maestri E., and Marmiroli N. DNA fingerprinting analysis by a PCR based method for monitoring the genotoxic effects of heavy metals pollution. Chemosphere 37 (1998) 2739-2749
8. De Wolf H., Blust R., and Backeljiau T. The use of RAPD in ecotoxicology: A review. Mutation Research 566 (2004) 249-262
9. Enan M.R. Application of random amplified polymorphic DNA to detect genotoxic effect of heavy metals. Biotechnology and Applied Biochemistry 43 (2006) 147-154
10. Evans K.M., and James C.M. Identification of SCAR markers linked to powdery mildew resistance in apple. Theoritical and Applied Genetics 106 (2003) 1178-1183
11. Gupta M., and Chandra P. Bioaccumulation and physiological changes in Hydrilla verticillata (l.f.) Royle in response to mercury. Bulletin of Environmental Contamination and Toxicology 56 (1996) 319-326
12. Gupta M., Tripathi R.D., Rai U.N., and Chandra P. Role of glutathione and phytochelatin in Hydrilla verticillata (l.f.) Royle and Vallisneria spiralis L. under mercury stress. Chemosphere 37 4 (1998) 785-800
13. Hernandez P., Martin A., and Dorado G. Development of SCARs by direct sequencing of RAPD products: A practical tool for the introgression and marker assisted selection of wheat. Molecular Breeding 5 (1999) 245-253
14. Liu W., Li P.J., Qi X.M., Zhou Q.X., Zheng L., Sun T.H., and Yang Y.S. DNA changes in barley (Hordeum vulgare) seedlings induced by cadmium pollution using RAPD analysis. Chemosphere 61 (2005) 158-167
15. Mengoni A., Gonelli C., Galardi F., Gabbrielli R., and Bazzicalupo M. Genetic diversity and heavy metal tolerance in populations of Silene paradoxa L. (Caryophyllaceae): A random amplified polymorphic DNA analysis. Molecular Ecology 9 9 (2000) 1319-1324
16. Nelson J.R., Lawerence C.W., and Hinkle D.C. Thymine-thymine dimmer bypass by yeast DNA-polymerase-zeta. Science 272 (1996) 1646-1649
17. Paran I., and Michelmore R.W. Development of reliable PCR based markers linked to doeny mildew resistance genes in lettuce. Theoritical and Applied Genetics 85 (1993) 985-993
18. Savva D. Use of DNA fingerprinting to detect genotoxic effects. Ecotoxicology and Environmental Safety 41 (1998) 103-106
19. Steinkellner H., Kassie F., and Knasmuller S. Tradescantia-micronucleus assay for the assessment of the clastogenicity of Austrian water. Mutation Research 426 (1999) 113-116
20. Theodorakis C.W., and Bickham J.W. Molecular characterization of contaminant-indicative RAPD markers. Ecotoxicol-ogy 13 (2004) 303-309
21. Williams J., Kubelik A.R., and Livak K.J. DNA polymorphism amplified by arbitrary primers are useful as genetic markers. Nucleic Acid Research 18 (1990) 6531-6535