Metal-MACiE: A database of metals involved in biological catalysis

Bioinformatics

Volumn 25, Issue 16, 2009, Pages 2088-2089

  Andreini, Claudia ^a   Bertini, Ivano ^a   Cavallaro, Gabriele ^a   Holliday, Gemma L ^b   Thornton, Janet M ^b  

^a UNIVERSITY OF FLORENCE   (Italy)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME; METAL;

ARTICLE; BIOCHEMISTRY; BIOINFORMATICS; CATALYSIS; ENZYME MECHANISM; ENZYMOLOGY; MEDICAL RESEARCH; METAL MACIE DATABASE; MOLECULAR BIOLOGY; PRIORITY JOURNAL; PROTEIN DATABASE;

BIOCATALYSIS; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; DATABASES, PROTEIN; METALLOPROTEINS; METALS; SOFTWARE;

EID: 68549113108     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp256     Document Type: Article

References (9)

1. Andreini,C. et al. (2008) Metal ions in biological catalysis: From enzyme databases to general principles. J. Biol. Inorg. Chem., 13, 1205-1218.
2. Barthelmes,J. et al. (2007) BRENDA, AMENDA and FRENDA: The enzyme information system in 2007. Nucleic Acids Res., 35, D511-D514.
3. Bateman,R.L. et al. (2001) Mechanistic inferences from the crystal structure of fumarylacetoacetate hydrolase with a bound phosphorus-based inhibitor. J. Biol. Chem., 276, 15284-15291.
4. Bertini,I. et al. (2001) Handbook on Metalloproteins. Marcel Dekker, New York.
5. Castagnetto,J.M. et al. (2002) MDB: The Metalloprotein Database and Browser at The Scripps Research Institute. Nucleic Acids Res., 30, 379-382.
6. Clugston,S.L. et al. (1998) Overproduction and characterization of a dimeric non-zinc glyoxalase I from Escherichia coli: Evidence for optimal activation by nickel ions. Biochemistry, 37, 8754-8763.
7. Degtyarenko,K.N. et al. (1999) PROMISE: A database of bioinorganic motifs. Nucleic Acids Res., 27, 233-236.
8. Holliday,G.L. et al. (2005) MACiE: A database of enzyme reaction mechanisms. Bioinformatics, 21, 4315-4316.
9. McDonald,A.G. et al. (2007) ExplorEnz: A MySQL database of the IUBMB enzyme nomenclature. BMC Biochem., 8, 14.