Drosophila P transposons of the urochordata Ciona intestinalis

Molecular Genetics and Genomics

Volumn 282, Issue 2, 2009, Pages 165-172

  Kimbacher, Stefanie ^a   Gerstl, Ingrid ^a   Velimirov, Branko ^a   Hagemann, Sylvia ^a  

^a MEDICAL UNIVERSITY OF VIENNA   (Austria)

Author keywords

Ciona; Drosophila; Evolution; P transposon; THAP9; Urochordata

Indexed keywords

TRANSPOSASE;

ARTICLE; CIONA INTESTINALIS; DROSOPHILA MELANOGASTER; GENE SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; TRANSPOSON; UROCHORDATA;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CIONA INTESTINALIS; COMPUTATIONAL BIOLOGY; DNA TRANSPOSABLE ELEMENTS; DROSOPHILA; GENE LIBRARY; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID;

CHORDATA; CIONA; CIONA INTESTINALIS; CIONA SAVIGNYI; DROSOPHILA MELANOGASTER; EUKARYOTA; UROCHORDATA; VERTEBRATA;

EID: 68549106034     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-009-0453-7     Document Type: Article

References (36)

1. D Anxolabéhère D Nouaud G Periquet P Tchen 1985 P-Element distribution in Eurasian populations of Drosophila melanogaster: A genetic and molecular analysis Proc Natl Acad Sci USA 82 5418 5422
2. D Anxolabéhère D Nouaud G Périquet 1985 Séquences homologoues á l'élément P chez des espèces de Drosophila du groupe obscura et chez Scaptomyza pallida (Drosophilidae) Génét Sél Evol 17 579 584
3. D Anxolabéhère MG Kidwell G Periquet 1988 Molecular characteristics of diverse populations are consistent with the hypothesis of a recent invasion of Drosophila melanogaster by mobile P elements Mol Biol Evol 5 252 269
4. JF Brookfield E Montgomery CH Langley 1984 Apparent absence of transposable elements related to the P elements of D. melanogaster in other species of Drosophila Nature 310 330 332
5. SB Daniels LD Strausbaugh 1986 The distribution of P-element sequences in Drosophila: the willistoni and saltans species groups J Mol Evol 23 138 148
6. P Dehal Y Satou RK Campbell J Chapman B Degnan A De Tomaso B Davidson A Di Gregorio M Gelpke DM Goodstein N Harafuji KE Hastings I Ho K Hotta W Huang T Kawashima P Lemaire D Martinez IA Meinertzhagen S Necula M Nonaka N Putnam S Rash H Saiga M Satake A Terry L Yamada HG Wang S Awazu K Azumi J Boore M Branno S Chin-Bow R DeSantis S Doyle P Francino DN Keys S Haga H Hayashi K Hino KS Imai K Inaba S Kano K Kobayashi M Kobayashi BI Lee KW Makabe C Manohar G Matassi M Medina Y Mochizuki S Mount T Morishita S Miura A Nakayama S Nishizaka H Nomoto F Ohta K Oishi I Rigoutsos M Sano A Sasaki Y Sasakura E Shoguchi T Shin-i A Spagnuolo D Stainier MM Suzuki O Tassy N Takatori M Tokuoka K Yagi F Yoshizaki S Wada C Zhang PD Hyatt F Larimer C Detter N Doggett T Glavina T Hawkins P Richardson S Lucas Y Kohara M Levine N Satoh DS Rokhsar 2002 The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins Science 298 2157 2167
7. F Delsuc H Brinkmann D Chourrout H Philippe 2006 Tunicates and not cephalochordates are the closest living relatives of vertebrates Nature 439 965 968
8. C Gissi G Pesole E Cattaneo M Tartari 2006 Huntingtin gene evolution in Chordata and its peculiar features in the ascidian Ciona genus BMC Genomics 7 288
9. Guindon S, Lethiec F, Duroux P, Gascuel O (2005) PHYML Online-a webserver for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 1;33(Web server issue):W557-559
10. S Hagemann SE Hammer 2006 The implications of DNA transposons in the evolution of P elements in zebrafish (Danio rerio) Genomics 5 572 579
11. S Hagemann W Pinsker 2001 Drosophila P transposons in the human genome? Mol Biol Evol 18 1979 1982
12. A Hagemann WJ Miller W Pinsker 1996 Repeated horizontal transfer of P transposons between Scaptomyza pallida and Drosophila bifasciata Genetica 98 43 51
13. SE Hammer S Strehl S Hagemann 2005 Homologs of Drosophila P transposons were mobile in zebrafish but have been domesticated in a common ancestor of chicken and human Mol Biol Evol 22 833 844
14. E Haring S Hagemann W Pinsker 1998 Transcription and splicing patterns of M- and O-type P elements in Drosophila bifasciata, D. helvetica, and Scaptomyza pallida J Mol Evol 46 542 551
15. Z Hoshino T Nishikawa 1985 Taxonomic studies of Ciona intestinalis (L.) and its allies Publ Seto Mar Lab 30 61 79
16. D Jiang WC Smith 2005 Self- and cross fertilization in the solitary ascidian Ciona savignyi Biol Bull 209 107 112
17. DS Johnson B Davidson CD Brown WC Smith A Sidow 2004 Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance Genome Res 14 2448 2456
18. J Jurka VV Kapitonov A Pavlicek P Klonowski O Kohany J Walichiewicz 2005 Repbase Update, a database of eukaryotic repetitive elements Cytogenet Genome Res 110 462 467
19. WJ Kent 2002 BLAT-the BLAST-like alignment tool Genome Res 12 656 664
20. MG Kidwell 1983 Evolution of hybrid dysgenesis determinants in Drosophila melanogaster Proc Natl Acad Sci USA 80 1655 1659
21. MG Kidwell JF Kidwell JA Sved 1977 Hybrid dysgenesis in Drosophila melanogaster: a syndrome of aberrant traits including mutation, sterility and male recombination Genetics 86 813 833
22. RA Lansman SN Stacey TA Grigliatti HW Brock 1985 Sequences homologous to the P mobile element of Drosophila melanogaster are widely distributed in the subgenus Sophophora Nature 318 561 563
23. FA Laski DC Rio GM Rubin 1986 Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing Cell 44 7 19
24. SH Lee JB Clark MG Kidwell 1999 A P element-homologous sequence in the house fly Musca domestica Insect Mol Biol 8 491 500
25. WJ Miller S Hagemann E Reiter W Pinsker 1992 P-element homologous sequences are tandemly repeated in the genome of Drosophila guanche Proc Natl Acad Sci USA 89 4018 4022
26. S Misra DC Rio 1990 Cytotype control of Drosophila P element transposition: the 66 kD protein is a repressor of transposase activity Cell 62 269 284
27. K O'Hare GM Rubin 1983 Structures of P transposable elements and their sites of insertion and excision in the Drosophila melanogaster genome Cell 34 25 35
28. K O'Hare A Driver S McGrath DM Johnson-Schlitz 1992 Distribution and structure of cloned P elements from the Drosophila melanogaster P strain Genet Res 60 33 41
29. HD Perkins AJ Howells 1992 Genomic sequences with homology to the P element of Drosophila melanogaster occur in the blowfly Lucilia cuprina Proc Natl Acad Sci USA 89 10753 10757
30. H Quesneville D Nouaud D Anxolabéhère 2005 Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element Mol Biol Evol 22 741 746
31. DC Rio GM Rubin 1988 Identification and purification of a Drosophila protein that binds to the terminal 31-base-pair inverted repeat of the P transposable element Proc Natl Acad Sci USA 85 8929 8933
32. DC Rio FA Laski GM Rubin 1986 Identification and immunochemical analysis of biologically active Drosophila P element transposase Cell 44 21 32
33. F Ronquist JP Huelsenbeck 2003 MrBayes 3: Bayesian phylogenetic inference under mixed models Bioinformatics 19 1572 1574
34. M Roussigne S Kossida AC Lavigne T Clouaire V Ecochard A Glories F Amalric JP Girard 2003 The THAP domain: a novel protein motif with similarity to the DNA- binding domain of P element transposase Trends Biochem Sci 28 66 69
35. M Roussigne C Cayrol T Clouaire F Amalric JP Girard 2003 THAP1 is a nuclear proapoptotic factor that links prostate-apoptosis-response-4 (Par-4) to PML nuclear bodies Oncogene 22 2432 2442
36. M Simonelig D Anxolabéhère 1991 A P element of Scaptomyza pallida is active in Drosophila melanogaster Proc Natl Acad Sci USA 88 6102 6106