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Volumn 84, Issue 1, 2009, Pages 105-117

A new DNA polymerase i from Geobacillus caldoxylosilyticus TK4: Cloning, characterization, and mutational analysis of two aromatic residues

Author keywords

DNA polymerase I; Geobacillus caldoxylosilyticus TK4; Mutation; Thermophilic

Indexed keywords

AROMATIC RESIDUES; BACILLUS SPECIES; DNA POLYMERASE; DNA POLYMERASE I; DOUBLE STRANDED DNA; E. COLI; ERROR RATE; EXONUCLEASE; EXONUCLEASE ACTIVITY; GEOBACILLUS CALDOXYLOSILYTICUS TK4; MUTATION; MUTATIONAL ANALYSIS; NUCLEASE ACTIVITY; PURIFIED ENZYME; REVERSE-TRANSCRIPTASE; SEQUENCE HOMOLOGY; SPECIFIC ACTIVITY; STRUCTURAL ELEMENTS; THERMOPHILIC; THERMOPHILIC BACTERIA; TRIPHOSPHATE;

EID: 68349104325     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-009-1962-3     Document Type: Article
Times cited : (15)

References (36)
  • 2
    • 0344783767 scopus 로고    scopus 로고
    • Purification and properties of the 5'-3' exonuclease D10A mutant of DNA polymerase I from Streptococcus pneumoniae: A new tool for DNA sequencing
    • DOI 10.1016/S0168-1656(98)00071-6, PII S0168165698000716
    • M Amblar G Sagner P López 1998 Purification and properties of the 5'-3' exonuclease D10A mutant of DNA polymerase I from Streptococcus pneumoniae: a new tool for DNA sequencing J Biotech 63 17 27 (Pubitemid 28375739)
    • (1998) Journal of Biotechnology , vol.63 , Issue.1 , pp. 17-27
    • Amblar, M.1    Sagner, G.2    Lopez, P.3
  • 3
    • 0037127250 scopus 로고    scopus 로고
    • DNA polymerase i of Mycobacterium tuberculosis
    • CJ Arrigo S Kamalendra MJ Modak 2002 DNA polymerase I of Mycobacterium tuberculosis J Biol Chem 277 1653 1661
    • (2002) J Biol Chem , vol.277 , pp. 1653-1661
    • Arrigo, C.J.1    Kamalendra, S.2    Modak, M.J.3
  • 4
    • 0032562549 scopus 로고    scopus 로고
    • How E. Coli DNA polymerase I (Klenow fragment) distinguishes between deoxy- and dideoxynucleotides
    • DOI 10.1006/jmbi.1998.1672
    • M Astatke NDF Grindley CM Joyce 1998 How E. coli DNA polymerase I (Klenow fragment) distinguishes between deoxy- and dideoxynucleotides J Mol Biol 278 147 165 (Pubitemid 28196157)
    • (1998) Journal of Molecular Biology , vol.278 , Issue.1 , pp. 147-165
    • Astatke, M.1    Grindley, N.D.F.2    Joyce, C.M.3
  • 5
    • 34547505787 scopus 로고    scopus 로고
    • Purification and characterization of a highly thermostable α-L-Arabinofuranosidase from Geobacillus caldoxylolyticus TK4
    • S Canakci AO Belduz BC Saha A Yasar FA Ayaz N Yayli 2007 Purification and characterization of a highly thermostable α-L-Arabinofuranosidase from Geobacillus caldoxylolyticus TK4 Appl Microbiol Biotechnol 75 813 820
    • (2007) Appl Microbiol Biotechnol , vol.75 , pp. 813-820
    • Canakci, S.1    Belduz, A.O.2    Saha, B.C.3    Yasar, A.4    Ayaz, F.A.5    Yayli, N.6
  • 6
    • 0025633829 scopus 로고
    • Purification of Thermus aquaticus DNA polymerase expressed in Esherichia coli
    • RE David K Alexandra EB Mary G David 1990 Purification of Thermus aquaticus DNA polymerase expressed in Esherichia coli Anal Biochem 191 396 400
    • (1990) Anal Biochem , vol.191 , pp. 396-400
    • David, R.E.1    Alexandra, K.2    Mary, E.B.3    David, G.4
  • 8
    • 0026085471 scopus 로고
    • The 3'→5' exonuclease of DNA polymerase i of Escherichia coli: Contribution of each amino acid at the active site of the reaction
    • V Derbyshire NDF Grindley CM Joyce 1991 The 3'→5' exonuclease of DNA polymerase I of Escherichia coli: contribution of each amino acid at the active site of the reaction EMBO J 10 17 24
    • (1991) EMBO J , vol.10 , pp. 17-24
    • Derbyshire, V.1    Grindley, N.D.F.2    Joyce, C.M.3
  • 9
    • 0037058832 scopus 로고    scopus 로고
    • Participation of active-site carboxylates of Escherichia coli DNA polymerase i (Klenow fragment) in the formation of a prepolymerase ternary complex
    • R Gangurde MJ Modak 2002 Participation of active-site carboxylates of Escherichia coli DNA polymerase I (Klenow fragment) in the formation of a prepolymerase ternary complex Biochemistry 41 14552 14559
    • (2002) Biochemistry , vol.41 , pp. 14552-14559
    • Gangurde, R.1    Modak, M.J.2
  • 12
  • 14
    • 0028827318 scopus 로고
    • Purification of E. coli DNA polymerase i and Klenow fragment
    • CM Joyce V Derbyshire 1995 Purification of E. coli DNA polymerase I and Klenow fragment Methods Enzymol 262 3 19
    • (1995) Methods Enzymol , vol.262 , pp. 3-19
    • Joyce, C.M.1    Derbyshire, V.2
  • 15
    • 35048897547 scopus 로고    scopus 로고
    • Cloning, sequence analysis and three-dimensional structure prediction of DNA pol i from thermophilic Geobacillus sp MKK isolated from an Iranian hot spring
    • M Khalaj-Kondori M Sadeghizadeh K Khajeh H Naderi-Manesh AM Ahadi A Emamzadeh 2007 Cloning, sequence analysis and three-dimensional structure prediction of DNA pol I from thermophilic Geobacillus sp MKK isolated from an Iranian hot spring Appl Biochem Biotechnol 42 200 8
    • (2007) Appl Biochem Biotechnol , vol.42 , pp. 200-8
    • Khalaj-Kondori, M.1    Sadeghizadeh, M.2    Khajeh, K.3    Naderi-Manesh, H.4    Ahadi, A.M.5    Emamzadeh, A.6
  • 16
    • 0024560060 scopus 로고
    • Isolation, characterization, and expression in Escherichia coli of the DNA polymerase gene from Thermus aquaticus
    • FC Lawyer S Stoffel RK Saiki K Myambo R Drummond DH Gelfand 1989 Isolation, characterization, and expression in Escherichia coli of the DNA polymerase gene from Thermus aquaticus J Biol Chem 264 6427 6437
    • (1989) J Biol Chem , vol.264 , pp. 6427-6437
    • Lawyer, F.C.1    Stoffel, S.2    Saiki, R.K.3    Myambo, K.4    Drummond, R.5    Gelfand, D.H.6
  • 17
    • 0033578332 scopus 로고    scopus 로고
    • Structure-based design of Taq DNA polymerases with improved properties of dideoxynucleotide incorporation
    • Y Li S Korolev G Waksman 1999 Structure-based design of Taq DNA polymerases with improved properties of dideoxynucleotide incorporation Proc Natl Acad Sci U S A 96 9491 9496
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 9491-9496
    • Li, Y.1    Korolev, S.2    Waksman, G.3
  • 18
    • 0026072061 scopus 로고
    • Large fragment of DNA polymerase i from Bacillus stearothermophilus (Bst polymerase) is stable at ambient temperature
    • YY Lu SY Ye GF Hong 1991 Large fragment of DNA polymerase I from Bacillus stearothermophilus (Bst polymerase) is stable at ambient temperature Biotechniques 11 464 466
    • (1991) Biotechniques , vol.11 , pp. 464-466
    • Lu, Y.Y.1    Ye, S.Y.2    Hong, G.F.3
  • 19
    • 0018846636 scopus 로고
    • Sequencing end-labeled DNA with base-specific chemical cleavages
    • AM Maxam W Gilbert 1980 Sequencing end-labeled DNA with base-specific chemical cleavages Methods Enzymol 65 499 560
    • (1980) Methods Enzymol , vol.65 , pp. 499-560
    • Maxam, A.M.1    Gilbert, W.2
  • 20
    • 0025830251 scopus 로고
    • Bst DNA polymerase permits rapid sequence analysis from nanogram amounts of template
    • DA Mead JA McClary JA Luckey AJ Kostichka FR Witney LM Smith 1991 Bst DNA polymerase permits rapid sequence analysis from nanogram amounts of template Biotechniques 11 76 87
    • (1991) Biotechniques , vol.11 , pp. 76-87
    • Mead, D.A.1    Luckey, J.A.2    Kostichka, A.J.3    Witney, F.R.4    Smith, L.M.5
  • 21
    • 0030444635 scopus 로고    scopus 로고
    • Deoxy- and dideoxynucleotide discrimination and identification of critical 5' nuclease domain residues of the DNA polymerase i from Mycobacterium tuberculosis
    • V Mizrahi P Huberts 1996 Deoxy- and dideoxynucleotide discrimination and identification of critical 5' nuclease domain residues of the DNA polymerase I from Mycobacterium tuberculosis Nucleic Acids Res 24 4845 4852
    • (1996) Nucleic Acids Res , vol.24 , pp. 4845-4852
    • Mizrahi, V.1    Huberts, P.2
  • 22
    • 0025988479 scopus 로고
    • Reverse transcription and DNA amplification by a Thermus thermophilis DNA polymerase
    • TW Myers DH Gelfand 1991 Reverse transcription and DNA amplification by a Thermus thermophilis DNA polymerase Biochemistry 30 7661 7666
    • (1991) Biochemistry , vol.30 , pp. 7661-7666
    • Myers, T.W.1    Gelfand, D.H.2
  • 24
    • 0029133307 scopus 로고
    • Cloning and complete sequence of the DNA polymerase-encoding gene (Bst Pol I) and characterisation of the KF-like fragment from Bacillus stearothermophilus
    • SM Phang CY Teo E Lo TWV Wong 1995 Cloning and complete sequence of the DNA polymerase-encoding gene (Bst Pol I) and characterisation of the KF-like fragment from Bacillus stearothermophilus Gene 163 65 68
    • (1995) Gene , vol.163 , pp. 65-68
    • Phang, S.M.1    Teo, C.Y.2    Lo, E.3    Wong, T.W.V.4
  • 25
    • 0025121103 scopus 로고
    • Identification of residues critical for the polymerase activity of the Klenow fragment of DNA polymerase i from Escherichia coli
    • AJ Polesky TA Steitz NDF Grindley CM Joyce 1990 Identification of residues critical for the polymerase activity of the Klenow fragment of DNA polymerase I from Escherichia coli J Biol Chem 265 14579 14591
    • (1990) J Biol Chem , vol.265 , pp. 14579-14591
    • Polesky, A.J.1    Steitz, T.A.2    Grindley, N.D.F.3    Joyce, C.M.4
  • 27
    • 0024267430 scopus 로고
    • Fidelity of HIV-1 reverse transcriptase
    • BD Preston BJ Poiesz LA Loeb 1988 Fidelity of HIV-1 reverse transcriptase Science 242 1168 1171
    • (1988) Science , vol.242 , pp. 1168-1171
    • Preston, B.D.1    Poiesz, B.J.2    Loeb, L.A.3
  • 29
    • 84968410229 scopus 로고
    • Direct cloning and sequence analysis of enzymatically amplified genomic sequences
    • SJ Scharf GT Horn HA Erlich 1986 Direct cloning and sequence analysis of enzymatically amplified genomic sequences Science 239 487 491
    • (1986) Science , vol.239 , pp. 487-491
    • Scharf, S.J.1    Horn, G.T.2    Erlich, H.A.3
  • 30
    • 34249861631 scopus 로고    scopus 로고
    • Participation of fingers subdomain of E. coli DNA polymerase i in the strand displacement synthesis of DNA
    • K Singh A Srivastava SS Patel MJ Modak 2007 Participation of fingers subdomain of E. coli DNA polymerase I in the strand displacement synthesis of DNA J Biol Chem 282 10594 10604
    • (2007) J Biol Chem , vol.282 , pp. 10594-10604
    • Singh, K.1    Srivastava, A.2    Patel, S.S.3    Modak, M.J.4
  • 32
    • 0029023051 scopus 로고
    • A single residue in DNA polymerases of the Escherichia coli DNA polymerase i family is critical for distinguishing between deoxy- and dideoxyribonucleotides
    • S Tabor CC Richardson 1995 A single residue in DNA polymerases of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy- and dideoxyribonucleotides Proc Natl Acad Sci U S A 92 6339 6343
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 6339-6343
    • Tabor, S.1    Richardson, C.C.2
  • 33
    • 0034864429 scopus 로고    scopus 로고
    • Cloning, sequence analysis and functional characterization of DNA polymerase i from the thermophilic eubacterium Rhodothermus marinus
    • B Thorarinn HT Sigridur K Jan H Sigridur KK Jakob ME Jon E Gudmundur 2001 Cloning, sequence analysis and functional characterization of DNA polymerase I from the thermophilic eubacterium Rhodothermus marinus Biotechnol Appl Biochem 34 37 45
    • (2001) Biotechnol Appl Biochem , vol.34 , pp. 37-45
    • Thorarinn, B.1    Sigridur, H.T.2    Jan, K.3    Sigridur, H.4    Jakob, K.K.5    Jon, M.E.6    Gudmundur, E.7
  • 34
    • 0027469780 scopus 로고
    • Cloning of the DNA polymerase gene of Bacillus caldotenax and characterization of the gene product
    • T Uemori Y Ishino K Fujita K Asada I Kato 1993 Cloning of the DNA polymerase gene of Bacillus caldotenax and characterization of the gene product J Biochem 113 401 410
    • (1993) J Biochem , vol.113 , pp. 401-410
    • Uemori, T.1    Ishino, Y.2    Fujita, K.3    Asada, K.4    Kato, I.5
  • 35
    • 0035839588 scopus 로고    scopus 로고
    • Contacts between the 5' nuclease of DNA polymerase i and its DNA substrate
    • X Yang O Potapova EL Andres DFG Nigel CM Joyce 2001 Contacts between the 5' nuclease of DNA polymerase I and its DNA substrate J Biol Chem 276 30167 30177
    • (2001) J Biol Chem , vol.276 , pp. 30167-30177
    • Yang, X.1    Potapova, O.2    Andres, E.L.3    Nigel, D.F.G.4    Joyce, C.M.5
  • 36
    • 0036799219 scopus 로고    scopus 로고
    • Mutant Thermotoga neapolitana DNA polymerase I: Altered catalytic properties for non-templated nucleotide addition and incorporation of correct nucleotides
    • SW Yang M Astatke J Potter DK Chatterjee 2002 Mutant Thermotoga neapolitana DNA polymerase I: altered catalytic properties for non-templated nucleotide addition and incorporation of correct nucleotides Nucleic Acids Res 19 4314 4320
    • (2002) Nucleic Acids Res , vol.19 , pp. 4314-4320
    • Yang, S.W.1    Astatke, M.2    Potter, J.3    Chatterjee, D.K.4


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