Genetic divergence among East Icelandic and Faroese populations of Atlantic cod provides evidence for historical imprints at neutral and non-neutral markers

ICES Journal of Marine Science

Volumn 65, Issue 1, 2008, Pages 65-71

  Pampoulie, Christophe ^a   Steingrund, Pétur ^b   Stefánsson, Magnus Ö ^a   Daníelsdóttir, Anna K ^a  

^a MARINE RESEARCH INSTITUTE   (Iceland)

^b Faroese Fisheries Laboratory   (Faroe Islands)

Author keywords

Faroe Islands; Gadus morhua; Historical signal; Iceland; Microsatellite loci; Migration; Pantophysin

Indexed keywords

DIVERGENCE; FISHERY MANAGEMENT; GADOID; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; LAST GLACIAL MAXIMUM; MIGRATION; POPULATION GENETICS; SIGNAL; STOCK ASSESSMENT;

ATLANTIC ISLANDS; ATLANTIC OCEAN; EURASIA; EUROPE; FAROE ISLANDS; ICELAND; ICELAND-FAROE RIDGE; NORTHERN EUROPE; SCANDINAVIA;

GADUS MORHUA;

EID: 44649088989     PISSN: 10543139     EISSN: 10959289     Source Type: Journal    
DOI: 10.1093/icesjms/fsm181     Document Type: Article

References (44)

1. Anon. 2006. Report of the North-WesternWorking Group, 25 April-4 May. ICES Document CM2006/ACFM: 26.
2. Beheregaray, L. B., and Sunnucks, P. 2001. Fine-scale structure, estuarine colonization and incipient speciation in the marine silverside fish Odontesthes argentinensis. Molecular Ecology, 10: 2849-2866.
3. Belkhir, K., Borsa, P., Goudet, J., and Bonhomme, F. 1999. GENETIX: logiciel sous Windows pour la génétique des populations Version 3.0. Laboratoire Génome and Population, CNRS-UPR, Université de Montpellier II, Montpellier (France).
4. Brickman, D., Marteinsdóttir, G., Logemann, K., and Harms, I. H. 2007. Drift probabilities for Icelandic cod larvae. ICES Journal of Marine Science, 64: 49-59.
5. Brooker, A. L., Cook, D., Bentzen, P., Wright, J. M., and Doyle, R. W. 1994. Organization of microsatellites differs between mammals and cold-water teleost fishes. Canadian Journal of Fisheries and Aquatic Science, 51: 1959-1966.
6. Case, R. A. J., Hutchinson, W. F., Hauser, L., Van Oosterhout, C., and Carvalho, G. R. 2005. Macro- and micro-geographic variation in pantophysin (Pan I) allele frequencies in NE Atlantic cod Gadus morhua. Marine Ecology Progress Series, 301: 267-278.
7. de Ligny, W. 1969. Serological and biochemical studies on fish populations. Oceanography and Marine Biology: An Annual Review, 7: 411-513.
8. Dupanloup, I., Schneider, S., and Excoffier, L. 2002. A simulated annealing approach to define the genetic structure of populations. Molecular Ecology, 11: 2571-2581.
9. Hanfling, B., Hellemans, B., Volckaert, F. A. M., and Carvalho, G. R. 2002. Late glacial history of the cold-adapted freshwater fish Cottus gobio, revealed by microsatellites. Molecular Ecology, 11: 1717-1729.
10. Hardie, D. C., Gillet, R. M., and Hutchings, J. A. 2006. The effects of isolation and colonization history on the genetic structure of marine-relict populations of Atlantic cod (Gadus morhua) in the Canadian Arctic. Canadian Journal of Fisheries and Aquatic Sciences, 63: 1830-1839.
11. Hardy, O. J., Charbonnel, N., Freville, H., and Heuertz, M. 2003. Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation. Genetics, 163: 1467-1482.
12. Hilbish, T. J. 1996. Population genetics of marine species: the interaction of natural selection and historically differentiated populations. Journal of Experimental Marine Biology and Ecology, 200: 67-83.
13. Hutchinson, W. F., Carvalho, G. R., and Rogers, S. I. 2001. Marked genetic structuring in localised spawning populations of cod Gadus morhua in the North Sea and adjoining waters, as revealed by microsatellites. Marine Ecology Progress Series, 223: 251-260.
14. Jamieson, A., and Birley, A. J. 1989. The demography of haemoglobin polymorphism in the Atlantic cod, Gadus morhua L. Journal of Fish Biology, 35: 193-204.
15. Joensen, J. S., Steingrund, P., Henriksen, A., and Mouritsen, R. 2005. Migration of cod (Gadus morhua): tagging experiments at the Faroes 1952-1965. Fróoskaparrit, 53: 100-135.
16. Jónsdóttir, I. G., Campana, S. E., and Marteinsdó ttir, G. 2006. Stock structure of Icelandic cod Gadus morhua L. based on otolith chemistry. Journal of Fish Biology, 69: 136-150.
17. Jónsson, J. 1996. Tagging of cod (Gadus morhua) in Icelandic waters 1948-1986. Rit Fiskideildar, 14: 1-82.
18. Knutsen, H., Jorde, P. E., André, C., and Stenseth, N. C. 2003. Fine-scaled geographical population structuring in a highly mobile marine species: the Atlantic cod. Molecular Ecology, 12: 385-394.
19. Manni, F., Guérard, E., and Heyer, E. 2004. Geographic patterns of (genetic, morphologic, linguistic) variation: how barriers can be detected by "Monmonier's algorithm". Human Biology, 76: 173-190.
20. Marteinsdóttir, G., and Björnsson, H. 1999. Time and duration of spawning of cod in Icelandic waters. ICES Document CM 1999/Y: 34.
21. Marteinsdóttir, G., Guomunosdóttir, A., Thorsteinsson, V., and Stefansson, G. 2000. Spatial variation in abundance, size composition and viable egg production of spawning cod (Gadus morhua L.) in Icelandic waters. ICES Journal of Marine Science, 57: 824-830.
22. Miller, K. M., Le, K. D., and Beacham, T. D. 2000. Development of triand tetranucleotide repeat microsatellite loci in Atlantic cod (Gadus morhua). Molecular Ecology, 9: 238-239.
23. Mork, J., Ryman, N., Ståhl, G., Utter, F., and Sundnes, G. 1985. Genetic variation in Atlantic cod (Gadus morhua) throughout its range. Canadian Journal of Fisheries and Aquatic Sciences, 42: 1580-1587.
24. Nielsen, E. E., Hansen, M. M., Ruzzante, D. E., Meldrup, D., and Gronkjaer, P. 2003. Evidence of a hybrid-zone in Atlantic cod (Gadus morhua) in the Baltic and the Danish Belt Sea revealed by individual admixture analysis. Molecular Ecology, 12: 1497-1508.
25. O'Reilly, P. T., Canino, M. F., Bailey, K. M., and Bentzen, P. 2000. Isolation of twenty low stutter di- and tetranucleotide microsatellites for population analyses of walleye pollock and other gadoids. Journal of Fish Biology, 56: 1074-1086.
26. Pampoulie, C., Ruzzante, D. E., Chosson, V., Jörundsdóttir, T. G., Taylor, L., Thorsteinsson, V., Daníelsdóttir, A. K., et al. 2006. The genetic structure of Atlantic cod (Gadus morhua) around Iceland: insight from microsatellites, the Pan I locus, and tagging experiments. Canadian Journal of Fisheries and Aquatic Sciences, 63: 2660-2674.
27. Pogson, G. H., and Mesa, K. A. 2004. Positive Darwinian selection at the pantophysin (Pan I) locus in marine gadid fishes. Molecular Biology and Evolution, 21: 65-75.
28. Pogson, G. H., Mesa, K. A., and Boutilier, R. G. 1995. Genetic population structure and gene flow in the Atlantic cod Gadus morhua: a comparison of allozyme and nuclear RFLP loci. Genetics, 139: 375-385.
29. Pogson, G. H., Taggart, T. C., Mesa, K. A., and Boutilier, R. G. 2001. Isolation by distance in the Atlantic cod Gadus morhua, at large and small geographical scales. Evolution, 55: 131-146.
30. Raymond, R., and Rousset, F. 1995. GENEPOP (Version 1.2): population genetic software for exact tests and ecumenicism. Journal of Heredity, 86: 248-249.
31. Rice, W. R. 1989. Analyzing table of statistical tests. Evolution, 43: 223-225.
32. Robichaud, D., and Rose, G. A. 2004. Migratory behaviour and range in Atlantic cod: inference from a century of tagging. Fish and Fisheries, 5: 185-214.
33. Ross, I., and Gentleman, R. 1996. R: a language for data analysis and graphics. Journal of Computational Graphical and Statistics, 5: 299-314.
34. Ruzzante, D. E., Taggart, C. T., Cook, D., and Goddard, S. 1996. Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua) off Newfoundland: microsatellite DNA variation and antifreeze level. Canadian Journal of Fisheries and Aquatic Sciences, 53: 634-645.
35. Ruzzante, D. E., Taggart, C. T., Doyle, R. W., and Cook, D. 2001. Stability in the historical pattern of genetic structure of Newfoundland cod (Gadus morhua) despite the catastrophic decline in population size from 1964 to 1994. Conservation Genetics, 2: 257-269.
36. Sarvas, T. H., and Fevolden, S. E. 2005. Pantophysin (Pan I) locus divergence between inshore v. offshore and northern v. southern populations of Atlantic cod in the north-east Atlantic. Journal of Fish Biology, 67: 444-469.
37. Siegert, M. J., and Dowdeswell, J. A. 2004. Numerical reconstruction of the Eurasian ice sheet and climate during the late Weichselian. Quaternary Science Reviews, 23: 1273-1283.
38. Steingrund, P., and Gaard, E. 2005. Relationship between phytoplankton production and cod production on the Faroe shelf. ICES Journal of Marine Science, 62: 163-176.
39. Steingrund, P., Hansen, B., and Gaard, E. 2005. Cod in Faroese waters. In Spawning and Life History Information for North Atlantic Cod Stocks. ICES Cooperative Research Report, 274: 50-55.
40. Tåning, A. V. 1940. Migration of cod marked on the spawning places off the Faroese. Meddelelser fra Kommissionen for Danmarks fiskeri- og havundersogelser, serie: Fiskeri, 10: 1-52.
41. Turgeon, J., and Bernatchez, L. 2001. Clinal variation at microsatellite loci reveals historical secondary intergradation between glacial races of Coregonus artedi (Teleostei: Coregoninae). Evolution, 55: 2274-2286.
42. Valdimarsson, H., and Malmberg, S. A. 1999. Near-surface circulation in Icelandic waters derived from satellite tracked drifters. Rit Fiskideildar, 16: 23-39.
43. Waples, R. S. 1998. Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species. Journal of Heredity, 89: 438-450.
44. Weir, B. S., and Cockerham, C. C. 1984. Estimating F-statistics for the analysis of population structure. Evolution, 38: 1358-1370.