-
1
-
-
0030801002
-
Gapped BLAST and PSIBLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
44149110803
-
Caspase 2 is both required for p53-mediated apoptosis and down-regulated by p53 in a p21-dependent manner
-
Baptiste-Okoh N, Barsotti AM, Prives C (2008) Caspase 2 is both required for p53-mediated apoptosis and down-regulated by p53 in a p21-dependent manner. Cell Cycle 7: 1133-1138.
-
(2008)
Cell Cycle
, vol.7
, pp. 1133-1138
-
-
Baptiste-Okoh, N.1
Barsotti, A.M.2
Prives, C.3
-
3
-
-
0033976458
-
The Pfam protein families database
-
Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer EL (2000) The Pfam protein families database. Nucleic Acids Res 28: 263-266.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 263-266
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Howe, K.L.5
Sonnhammer, E.L.6
-
4
-
-
0028252062
-
Ankyrin shares a binding site with phospholipid vesicles on erythrocyte spectrin
-
Bialkowska K, Zembron A, Sikorski AF (1994) Ankyrin shares a binding site with phospholipid vesicles on erythrocyte spectrin. Acta Biochim Polon 41: 155-157.
-
(1994)
Acta Biochim Polon
, vol.41
, pp. 155-157
-
-
Bialkowska, K.1
Zembron, A.2
Sikorski, A.F.3
-
6
-
-
0032420333
-
JPred: a consensus secondary structure prediction server
-
Cuff JA, Clamp ME, Siddiqui AS, Finlay M, Barton GJ (1998) JPred: a consensus secondary structure prediction server. Bioinformatics 14: 892-893.
-
(1998)
Bioinformatics
, vol.14
, pp. 892-893
-
-
Cuff, J.A.1
Clamp, M.E.2
Siddiqui, A.S.3
Finlay, M.4
Barton, G.J.5
-
7
-
-
0347364671
-
The death domain of kidney ankyrin interacts with Fas and promotes Fasmediated cell death in renal epithelia
-
Del Rio M, Imam A, DeLeon M, Gomez G, Mishra J, Ma Q, Parikh S, Devarajan P (2004) The death domain of kidney ankyrin interacts with Fas and promotes Fasmediated cell death in renal epithelia. J Am Soc Nephrol 15: 41-51.
-
(2004)
J Am Soc Nephrol
, vol.15
, pp. 41-51
-
-
Del Rio, M.1
Imam, A.2
DeLeon, M.3
Gomez, G.4
Mishra, J.5
Ma, Q.6
Parikh, S.7
Devarajan, P.8
-
8
-
-
1542286614
-
The role of membrane-bound ankyrin-repeat protein ACD6 in programmed cell death and plant defense
-
Dong X (2004) The role of membrane-bound ankyrin-repeat protein ACD6 in programmed cell death and plant defense. Sci STKE 2004: pe6.
-
(2004)
Sci STKE
, vol.2004
-
-
Dong, X.1
-
9
-
-
34447323332
-
Androgen receptor and c-Myc transcription factors as putative partners in the in vivo cross-talk between androgen receptor-mediated and c-Met-mediated signalling pathways
-
Dudkowska M, Jaworski T, Grzelakowska-Sztabert B, Manteuffel-Cymborowska M (2007) Androgen receptor and c-Myc transcription factors as putative partners in the in vivo cross-talk between androgen receptor-mediated and c-Met-mediated signalling pathways. Acta Biochim Polon 54: 253-259.
-
(2007)
Acta Biochim Polon
, vol.54
, pp. 253-259
-
-
Dudkowska, M.1
Jaworski, T.2
Grzelakowska-Sztabert, B.3
Manteuffel-Cymborowska, M.4
-
10
-
-
33644876020
-
Pfam: clans, web tools and services
-
Finn RD, Mistry J, Schuster-Bockler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A (2006) Pfam: clans, web tools and services. Nucleic Acids Res 34: D247-D251.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
11
-
-
0037624841
-
3D-SHOTGUN: a novel, cooperative, fold-recognition meta-predictor
-
Fischer D (2003) 3D-SHOTGUN: a novel, cooperative, fold-recognition meta-predictor. Proteins 51: 434-441.
-
(2003)
Proteins
, vol.51
, pp. 434-441
-
-
Fischer, D.1
-
13
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.24
Zhang, J.25
more..
-
14
-
-
0038386050
-
3D-Jury: a simple approach to improve protein structure predictions
-
Ginalski K, Elofsson A, Fischer D, Rychlewski L (2003) 3D-Jury: a simple approach to improve protein structure predictions. Bioinformatics 19: 1015-1018.
-
(2003)
Bioinformatics
, vol.19
, pp. 1015-1018
-
-
Ginalski, K.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
18
-
-
62549129569
-
Structures of the spectrin-ankyrin interaction binding domains
-
Ipsaro JJ, Huang L, Mondragon A (2009) Structures of the spectrin-ankyrin interaction binding domains. Blood 113: 5385-5393.
-
(2009)
Blood
, vol.113
, pp. 5385-5393
-
-
Ipsaro, J.J.1
Huang, L.2
Mondragon, A.3
-
19
-
-
23144463912
-
FFAS03: a server for profile-profile sequence alignments
-
Jaroszewski L, Rychlewski L, Li Z, Li W, Godzik A (2005) FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Res 33: W284-W288.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Jaroszewski, L.1
Rychlewski, L.2
Li, Z.3
Li, W.4
Godzik, A.5
-
21
-
-
0034595501
-
Enhanced genome annotation using structural profiles in the program 3D-PSSM
-
Kelley LA, MacCallum RM, Sternberg MJ (2000) Enhanced genome annotation using structural profiles in the program 3D-PSSM. J Mol Biol 299: 499-520.
-
(2000)
J Mol Biol
, vol.299
, pp. 499-520
-
-
Kelley, L.A.1
MacCallum, R.M.2
Sternberg, M.J.3
-
22
-
-
40549104753
-
Uncharacterized DUF1574 leptospira proteins are SGNH hydrolases
-
Knizewski L, Steczkiewicz K, Kuchta K, Wyrwicz L, Plewczynski D, Kolinski A, Rychlewski L, Ginalski K (2008) Uncharacterized DUF1574 leptospira proteins are SGNH hydrolases. Cell Cycle 7: 542-544.
-
(2008)
Cell Cycle
, vol.7
, pp. 542-544
-
-
Knizewski, L.1
Steczkiewicz, K.2
Kuchta, K.3
Wyrwicz, L.4
Plewczynski, D.5
Kolinski, A.6
Rychlewski, L.7
Ginalski, K.8
-
23
-
-
51849138365
-
The fold recognition of CP2 transcription factors gives new insights into the function and evolution of tumor suppressor protein p53
-
Kokoszynska K, Ostrowski J, Rychlewski L, Wyrwicz LS (2008a) The fold recognition of CP2 transcription factors gives new insights into the function and evolution of tumor suppressor protein p53. Cell Cycle 7: 2907-2915.
-
(2008)
Cell Cycle
, vol.7
, pp. 2907-2915
-
-
Kokoszynska, K.1
Ostrowski, J.2
Rychlewski, L.3
Wyrwicz, L.S.4
-
24
-
-
47749129243
-
The mitotic entry regulator NIPA is a prototypic BIR domain protein
-
Kokoszynska K, Rychlewski L, Wyrwicz LS (2008b) The mitotic entry regulator NIPA is a prototypic BIR domain protein. Cell Cycle 7: 2073-2075.
-
(2008)
Cell Cycle
, vol.7
, pp. 2073-2075
-
-
Kokoszynska, K.1
Rychlewski, L.2
Wyrwicz, L.S.3
-
26
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
28
-
-
0038724909
-
c-Met: structure, functions and potential for therapeutic inhibition
-
Ma PC, Maulik G, Christensen J, Salgia R (2003) c-Met: structure, functions and potential for therapeutic inhibition. Cancer Metastasis Rev 22: 309-325.
-
(2003)
Cancer Metastasis Rev
, vol.22
, pp. 309-325
-
-
Ma, P.C.1
Maulik, G.2
Christensen, J.3
Salgia, R.4
-
29
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin LJ, Bryson K, Jones DT (2000) The PSIPRED protein structure prediction server. Bioinformatics 16: 404-405.
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
30
-
-
34248143349
-
Met signals hepatocyte survival by preventing Fas-triggered FLIP degradation in a PI3k-Akt-dependent manner
-
Moumen A, Ieraci A, Patane S, Solé C, Comella JX, Dono R, Maina F (2007) Met signals hepatocyte survival by preventing Fas-triggered FLIP degradation in a PI3k-Akt-dependent manner. Hepatology 45: 1210-1217.
-
(2007)
Hepatology
, vol.45
, pp. 1210-1217
-
-
Moumen, A.1
Ieraci, A.2
Patane, S.3
Solé, C.4
Comella, J.X.5
Dono, R.6
Maina, F.7
-
31
-
-
0037433034
-
PCMA: fast and accurate multiple sequence alignment based on profile consistency
-
Pei J, Sadreyev R, Grishin NV (2003) PCMA: fast and accurate multiple sequence alignment based on profile consistency. Bioinformatics 19: 427-428.
-
(2003)
Bioinformatics
, vol.19
, pp. 427-428
-
-
Pei, J.1
Sadreyev, R.2
Grishin, N.V.3
-
32
-
-
19244365798
-
The domains of apoptosis: a genomics perspective
-
Reed JC, Doctor KS, Godzik A (2004) The domains of apoptosis: a genomics perspective. Sci STKE 2004: re9.
-
(2004)
Sci STKE
, vol.2004
-
-
Reed, J.C.1
Doctor, K.S.2
Godzik, A.3
-
34
-
-
0034567210
-
Comparative protein structure modelling. Introduction and practical examples with modeller
-
Sanchez R, Sali A (2000) Comparative protein structure modeling. Introduction and practical examples with modeller. Methods Mol Biol 143: 97-129.
-
(2000)
Methods Mol Biol
, vol.143
, pp. 97-129
-
-
Sanchez, R.1
Sali, A.2
-
35
-
-
85078505221
-
The FADD is going nuclear
-
Sheikh MS, Huang Y (2003) The FADD is going nuclear. Cell Cycle 2: 346-347.
-
(2003)
Cell Cycle
, vol.2
, pp. 346-347
-
-
Sheikh, M.S.1
Huang, Y.2
-
37
-
-
58149352266
-
MACC1, a newly identified key regulator of HGF-MET signaling, predicts colon cancer metastasis
-
Stein U, Walther W, Arlt F, Schwabe H, Smith J, Fichtner I, Birchmeier W, Schlag PM (2009) MACC1, a newly identified key regulator of HGF-MET signaling, predicts colon cancer metastasis. Nat Med 15: 59-67.
-
(2009)
Nat Med
, vol.15
, pp. 59-67
-
-
Stein, U.1
Walther, W.2
Arlt, F.3
Schwabe, H.4
Smith, J.5
Fichtner, I.6
Birchmeier, W.7
Schlag, P.M.8
-
38
-
-
68249105959
-
Low molecular weight heparins induce osteoblast apoptosis: a putative mechanism for iatrogenic osteopenia
-
Street J, Power C, Wakai A, Wang JH, McGuinness A, Redmond HP (2000) Low molecular weight heparins induce osteoblast apoptosis: a putative mechanism for iatrogenic osteopenia. J Bone Joint Surg 84 B: 7.
-
(2000)
J Bone Joint Surg
, vol.84 B
, pp. 7
-
-
Street, J.1
Power, C.2
Wakai, A.3
Wang, J.H.4
McGuinness, A.5
Redmond, H.P.6
-
40
-
-
28344447874
-
TTP specifically regulates the internalization of the transferrin receptor
-
Tosoni D, Puri C, Confalonieri S, Salcini AE, De Camilli P, Tacchetti C, Di Fiore PP (2005) TTP specifically regulates the internalization of the transferrin receptor. Cell 123: 875-888.
-
(2005)
Cell
, vol.123
, pp. 875-888
-
-
Tosoni, D.1
Puri, C.2
Confalonieri, S.3
Salcini, A.E.4
De Camilli, P.5
Tacchetti, C.6
Di Fiore, P.P.7
-
41
-
-
0035425256
-
The death domain superfamily: a tale of two interfaces?
-
Weber CH, Vincenz C (2001) The death domain superfamily: a tale of two interfaces? Trends Biochem Sci 26: 475-481.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 475-481
-
-
Weber, C.H.1
Vincenz, C.2
-
42
-
-
35348918211
-
Fold recognition insights into function of herpes ICP4 protein
-
Wyrwicz LS, Rychlewski L (2007) Fold recognition insights into function of herpes ICP4 protein. Acta Biochim Polon 54: 551-559.
-
(2007)
Acta Biochim Polon
, vol.54
, pp. 551-559
-
-
Wyrwicz, L.S.1
Rychlewski, L.2
-
43
-
-
41549108815
-
Cytomegalovirus immediate early gene UL37 encodes a novel MHC-like protein
-
Wyrwicz LS, Rychlewski L (2008) Cytomegalovirus immediate early gene UL37 encodes a novel MHC-like protein. Acta Biochim Polon 55: 67-73.
-
(2008)
Acta Biochim Polon
, vol.55
, pp. 67-73
-
-
Wyrwicz, L.S.1
Rychlewski, L.2
-
44
-
-
46749109962
-
Homologues of HSV-1 nuclear egress factor UL34 are potential phosphoinositide-binding proteins
-
Wyrwicz LS, Koczyk G, Rychlewski L (2008) Homologues of HSV-1 nuclear egress factor UL34 are potential phosphoinositide-binding proteins. Acta Biochim Polon 55: 207-213.
-
(2008)
Acta Biochim Polon
, vol.55
, pp. 207-213
-
-
Wyrwicz, L.S.1
Koczyk, G.2
Rychlewski, L.3
-
46
-
-
29144463250
-
Crystal structure of MC159 reveals molecular mechanism of DISC assembly and FLIP inhibition
-
Yang JK, Wang L, Zheng L, Wan F, Ahmed M, Lenardo MJ, Wu H (2005) Crystal structure of MC159 reveals molecular mechanism of DISC assembly and FLIP inhibition. Mol Cell 20: 939-949.
-
(2005)
Mol Cell
, vol.20
, pp. 939-949
-
-
Yang, J.K.1
Wang, L.2
Zheng, L.3
Wan, F.4
Ahmed, M.5
Lenardo, M.J.6
Wu, H.7
-
47
-
-
2342425696
-
Identification of a ZU5 and death domain-containing inhibitor of NF-kappaB
-
Zhang J, Xu LG, Han KJ, Shu HB (2004) Identification of a ZU5 and death domain-containing inhibitor of NF-kappaB. J Biol Chem 279: 17819-17825.
-
(2004)
J Biol Chem
, vol.279
, pp. 17819-17825
-
-
Zhang, J.1
Xu, L.G.2
Han, K.J.3
Shu, H.B.4
|