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Volumn 5462 LNBI, Issue , 2009, Pages 424-436

Mutual information based extrinsic similarity for microarray analysis

Author keywords

Domain prediction; Graph spectral analysis.; Protein contact networks

Indexed keywords

ADJACENCY MATRICES; APRIORI; COMMUNITY DETECTION; CONTACT NETWORKS; DOMAIN PREDICTION; EIGENVECTORS; GRAPH SPECTRAL ANALYSIS.; LARGEST EIGENVALUES; MICROARRAY ANALYSIS; MODULARITY MATRIXES; MULTI DOMAINS; MUTUAL INFORMATIONS; OPTIMAL DIVISION; POLYPEPTIDE CHAIN; PROTEIN STRUCTURES; QUALITY FUNCTION; SIMPLE METHOD; SOCIAL NETWORKS; SPECTRAL PROPERTIES; STRUCTURAL DOMAINS;

EID: 68249114967     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-00727-9_39     Document Type: Conference Paper
Times cited : (4)

References (29)
  • 3
    • 0028907319 scopus 로고
    • A procedure for the automatic determination of hydrophobic cores in protein structures
    • Swindells, M.B.: A procedure for the automatic determination of hydrophobic cores in protein structures. Protein Sci. 4, 93-102 (1995)
    • (1995) Protein Sci.4 , pp. 93-102
    • Swindells, M.B.1
  • 4
    • 0027991446 scopus 로고
    • The FSSP database of structurally aligned protein fold families
    • Holm, L., Sander, C.: The FSSP database of structurally aligned protein fold families. Nucl. Acid Res. 22, 3600-3609 (1994)
    • (1994) Nucl. Acid Res. 22 , pp. 3600-3609
    • Holm, L.1    Sander, C.2
  • 5
    • 0028943588 scopus 로고
    • Continous and dicontinous domains, an algorithm for the automatic generation of reliable protein domain definitions
    • Siddiqui, A.S., Barton, G.J.: Continous and dicontinous domains, an algorithm for the automatic generation of reliable protein domain definitions. Protein Sci. 4, 872-884 (1995)
    • (1995) Protein Sci.4 , pp. 872-884
    • Siddiqui, A.S.1    Barton, G.J.2
  • 6
    • 0034491038 scopus 로고    scopus 로고
    • Protein domain decomposition using a graph-theoretic approach
    • Xu, Y., Xu, D., Gabow, H.: Protein domain decomposition using a graph-theoretic approach. Bioinformatics 16, 1091-1104 (2000)
    • (2000) Bioinformatics 16 , pp. 1091-1104
    • Xu, Y.1    Xu, D.2    Gabow, H.3
  • 7
    • 17844384545 scopus 로고    scopus 로고
    • Identification of domains and domain interface residues in multidomain proteins from graph spectral method
    • Ramesh, K., Sistla, B.K.V., Vishveshwara, S.: Identification of Domains and Domain Interface Residues in Multidomain Proteins From Graph Spectral Method. Structure, Function, and Bioinformatics 59, 616-626 (2005)
    • (2005) Structure, Function, and Bioinformatics 59 , pp. 616-626
    • Ramesh, K.1    Sistla, B.K.V.2    Vishveshwara, S.3
  • 8
    • 0031889752 scopus 로고    scopus 로고
    • Domain assignment for protein structures using a consensus approach, characterization and analysis
    • Jones, S., Stewart, M., Michie, A., Swindells, M.B., Orengo, C., Thorton, J.M.: Domain assignment for protein structures using a consensus approach, characterization and analysis. Protein Science 7, 233-242 (1998)
    • (1998) Protein Science 7 , pp. 233-242
    • Jones, S.1    Stewart, M.2    Michie, A.3    Swindells, M.B.4    Orengo, C.5    Thorton, J.M.6
  • 11
    • 33749468596 scopus 로고    scopus 로고
    • Finding community structure in networks using the eigenvectors of matrices
    • id.036104
    • Newman, M.E.J.: Finding community structure in networks using the eigenvectors of matrices. Phys. Rev. 74 (2006), id. 036104
    • (2006) Phys. Rev. 74
    • Newman, M.E.J.1
  • 12
    • 33745012299 scopus 로고    scopus 로고
    • Modularity and community structure in networks
    • Newman, M.E.J.: Modularity and community structure in networks. Proc. Natl. Acad. Sci. USA. 103, 8577-8582 (2006)
    • (2006) Proc. Natl. Acad. Sci. USA. 103 , pp. 8577-8582
    • Newman, M.E.J.1
  • 13
    • 85028479137 scopus 로고    scopus 로고
    • Finding community structure in very large networks
    • id.066111
    • Clauset, A., Newman, M.E.J., Moore, C.: Finding community structure in very large networks. Phys. Rev. 70 (2004), id. 066111
    • (2004) Phys. Rev.70
    • Clauset, A.1    Newman, M.E.J.2    Moore, C.3
  • 14
    • 0028290005 scopus 로고
    • Parser for protein folding units
    • Holm, L., Sander, C.: Parser for protein folding units. Proteins 19, 256-268 (1994)
    • (1994) Proteins 19 , pp. 256-268
    • Holm, L.1    Sander, C.2
  • 16
    • 43349094507 scopus 로고    scopus 로고
    • The igraph software package for complex network research
    • Csardi, G., Nepusz, T.: The igraph software package for complex network research. Inter- Journal Complex Systems. 1695 (2006)
    • (2006) Inter- Journal Complex Systems , pp. 1695
    • Csardi, G.1    Nepusz, T.2
  • 19
    • 7444235466 scopus 로고    scopus 로고
    • Electricity based external similarity of categorical attributes
    • Whang, K.-Y., Jeon, J., Shim, K., Srivastava, J. (eds.), LNCS, Springer, Heidelberg
    • Palmer, C., Faloutsos, C.: Electricity based external similarity of categorical attributes. In: Whang, K.-Y., Jeon, J., Shim, K., Srivastava, J. (eds.) PAKDD 2003. LNCS, vol.2637. Springer, Heidelberg (2003)
    • (2003) PAKDD 2003 , vol.2637
    • Palmer, C.1    Faloutsos, C.2
  • 20
    • 0037199968 scopus 로고    scopus 로고
    • Hierarchical organization of modularity in metabolic networks
    • Ravasz, E., et al.: Hierarchical organization of modularity in metabolic networks. Science 297(5586), 1551-1555 (2002)
    • (2002) Science , vol.297 , Issue.5586 , pp. 1551-1555
    • Ravasz, E.1
  • 22
    • 0037197886 scopus 로고    scopus 로고
    • The identification of functional modules from the genomic association of genes
    • Snel, B., Bork, P., Huynen, M.: The identification of functional modules from the genomic association of genes. Proc. Natl. Acad. Sci. 99, 5890-5895 (2002)
    • (2002) Proc. Natl. Acad. Sci. 99 , pp. 5890-5895
    • Snel, B.1    Bork, P.2    Huynen, M.3
  • 23
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • Spirin, V., Mirny, L.A.: Protein complexes and functional modules in molecular networks. PNAS 100(21) (2003)
    • (2003) PNAS , vol.100 , Issue.21
    • Spirin, V.1    Mirny, L.A.2
  • 24
    • 0141993704 scopus 로고    scopus 로고
    • A gene coexpression network for global discovery of conserved genetic modules
    • Stuart, J., Segal, E., Koller, D., Kim, S.: A gene coexpression network for global discovery of conserved genetic modules. Science 302(5643), 249-255 (2003)
    • (2003) Science , vol.302 , Issue.5643 , pp. 249-255
    • Stuart, J.1    Segal, E.2    Koller, D.3    Kim, S.4
  • 26
    • 33750325308 scopus 로고    scopus 로고
    • Improving functional modularity in protein-protein interactions graphs using hub-induced subgraphs
    • Fürnkranz, J., Scheffer, T., Spiliopoulou, M. (eds.), LNCS, Springer, Heidelberg
    • Ucar, D., Asur, S., Catalyurek, U., Parthasarathy, S.: Improving Functional Modularity in Protein-Protein Interactions Graphs Using Hub-Induced Subgraphs. In: Fürnkranz, J., Scheffer, T., Spiliopoulou, M. (eds.) PKDD 2006. LNCS, vol.4213, pp. 371-382. Springer, Heidelberg (2006)
    • (2006) PKDD 2006 , vol.4213 , pp. 371-382
    • Ucar, D.1    Asur, S.2    Catalyurek, U.3    Parthasarathy, S.4
  • 27
    • 35748954038 scopus 로고    scopus 로고
    • Construction of a reference gene association network from multiple profiling data: Application to data analysis
    • Ucar, D., Neuhaus, I., Ross-MacDonald, P., Tilford, C., Parthasarathy, S., Siemers, N., Ji, R.: Construction of a reference gene association network from multiple profiling data: application to data analysis. Bioinformatics 23(20), 2716 (2007)
    • (2007) Bioinformatics , vol.23 , Issue.20 , pp. 2716
    • Ucar, D.1    Neuhaus, I.2    Ross-MacDonald, P.3    Tilford, C.4    Parthasarathy, S.5    Siemers, N.6    Ji, R.7
  • 28
    • 0346435107 scopus 로고    scopus 로고
    • Induction of cIAP-2 in human colon cancer cells through PKC/NF-B
    • Wang, Q., Wang, X., Evers, B.: Induction of cIAP-2 in human colon cancer cells through PKC/NF-B. J. Biol. Chem. 278, 51091-51099 (2003)
    • (2003) J. Biol. Chem. 278 , pp. 51091-51099
    • Wang, Q.1    Wang, X.2    Evers, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.