-
1
-
-
47949085051
-
Catalytic DNA (deoxyribozymes) for synthetic applications-current abilities and future prospects
-
Silverman, S. K. (2008) Catalytic DNA (deoxyribozymes) for synthetic applications-current abilities and future prospects. Chem. Commun. (Cambridge) 3467-3485.
-
(2008)
Chem. Commun. (Cambridge)
, pp. 3467-3485
-
-
Silverman, S.K.1
-
2
-
-
0028675028
-
A DNA enzyme that cleaves RNA
-
Breaker, R. R., and Joyce, G. F. (1994) A DNA enzyme that cleaves RNA. Chem. Biol. 1, 223-229.
-
(1994)
Chem. Biol.
, vol.1
, pp. 223-229
-
-
Breaker, R.R.1
Joyce, G.F.2
-
3
-
-
0029037713
-
A DNA metalloenzyme with DNA ligase activity
-
Cuenoud, B., and Szostak, J. W. (1995) A DNA metalloenzyme with DNA ligase activity. Nature 375, 611-614.
-
(1995)
Nature
, vol.375
, pp. 611-614
-
-
Cuenoud, B.1
Szostak, J.W.2
-
5
-
-
0029746712
-
AcatalyticDNAfor porphyrin metallation
-
Li, Y., and Sen, D. (1996)AcatalyticDNAfor porphyrin metallation. Nat. Struct. Biol. 3, 743-747.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 743-747
-
-
Li, Y.1
Sen, D.2
-
6
-
-
0029945146
-
Recognition of anionic porphyrins by DNA aptamers
-
DOI 10.1021/bi960038h
-
Li, Y., Geyer, C. R., and Sen, D. (1996) Recognition of anionic porphyrins by DNA aptamers. Biochemistry 35, 6911-6922. (Pubitemid 26172449)
-
(1996)
Biochemistry
, vol.35
, Issue.21
, pp. 6911-6922
-
-
Li, Y.1
Geyer, C.R.2
Sen, D.3
-
7
-
-
0347089036
-
A deoxyribozyme that harnesses light to repair thymine dimers in DNA
-
Chinnapen, D. J., and Sen, D. (2004)A deoxyribozyme that harnesses light to repair thymine dimers in DNA. Proc. Natl. Acad. Sci. U.S.A. 101, 65-69.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 65-69
-
-
Chinnapen, D.J.1
Sen, D.2
-
8
-
-
41449109957
-
DNA and RNA can be equally efficient catalysts for carbon-carbon bond formation
-
Chandra, M., and Silverman, S. K. (2008) DNA and RNA can be equally efficient catalysts for carbon-carbon bond formation. J. Am. Chem. Soc. 130, 2936-2937.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 2936-2937
-
-
Chandra, M.1
Silverman, S.K.2
-
9
-
-
41049088859
-
DNA-catalyzed formation of nucleopeptide linkages
-
Pradeepkumar, P. I., Hobartner, C., Baum, D. A., and Silverman, S. K. (2008) DNA-catalyzed formation of nucleopeptide linkages. Angew. Chem., Int. Ed. Engl. 47, 1753-1757.
-
(2008)
Angew. Chem., Int. Ed. Engl.
, vol.47
, pp. 1753-1757
-
-
Pradeepkumar, P.I.1
Hobartner, C.2
Baum, D.A.3
Silverman, S.K.4
-
10
-
-
47749107927
-
Deoxyribozymes: Useful DNA catalysts in vitro and in vivo
-
Baum, D. A., and Silverman, S. K. (2008) Deoxyribozymes: useful DNA catalysts in vitro and in vivo. Cell. Mol. Life Sci. 65, 2156-2174.
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 2156-2174
-
-
Baum, D.A.1
Silverman, S.K.2
-
11
-
-
0041305819
-
A common speed limit for RNA-cleaving ribozymes and deoxyribozymes
-
DOI 10.1261/rna.5670703
-
Breaker, R. R., Emilsson,G. M., Lazarev, D., Nakamura, S., Puskarz, I. J., Roth, A., and Sudarsan, N. (2003) A common speed limit for RNA-cleaving ribozymes and deoxyribozymes. RNA 9, 949-957. (Pubitemid 36899238)
-
(2003)
RNA
, vol.9
, Issue.8
, pp. 949-957
-
-
Breaker, R.R.1
Emilsson, G.M.2
Lazarev, D.3
Nakamura, S.4
Puskarz, I.J.5
Roth, A.6
Sudarsan, N.7
-
12
-
-
62649161589
-
Biologically inspired synthetic enzymes made from DNA
-
Schlosser, K., and Li, Y. (2009) Biologically inspired synthetic enzymes made from DNA. Chem. Biol. 16, 311-322.
-
(2009)
Chem. Biol.
, vol.16
, pp. 311-322
-
-
Schlosser, K.1
Li, Y.2
-
13
-
-
38049039329
-
Use of DNAzymes for site-specific analysis of ribonucleotide modifications
-
Hengesbach, M., Meusburger, M., Lyko, F., and Helm, M. (2008) Use of DNAzymes for site-specific analysis of ribonucleotide modifications. RNA 14, 180-187.
-
(2008)
RNA
, vol.14
, pp. 180-187
-
-
Hengesbach, M.1
Meusburger, M.2
Lyko, F.3
Helm, M.4
-
14
-
-
0345168177
-
Improving fluorescent DNAzyme biosensors by combining inter- and intramolecular quenchers
-
Liu, J., and Lu, Y. (2003) Improving fluorescent DNAzyme biosensors by combining inter- and intramolecular quenchers. Anal. Chem. 75, 6666-6672.
-
(2003)
Anal. Chem.
, vol.75
, pp. 6666-6672
-
-
Liu, J.1
Lu, Y.2
-
16
-
-
51549120593
-
Chip-based scanometric detection of mercuric ion using DNA-functionalized gold nanoparticles
-
Lee, J. S., and Mirkin, C. (2008) Chip-based scanometric detection of mercuric ion using DNA-functionalized gold nanoparticles. Anal. Chem. 80, 6805-6808.
-
(2008)
Anal. Chem.
, vol.80
, pp. 6805-6808
-
-
Lee, J.S.1
Mirkin, C.2
-
17
-
-
37549029838
-
2+ detection with a ligation DNAzyme and nanoparticles
-
2+ detection with a ligation DNAzyme and nanoparticles. Chem. Commun. (Cambridge), 4872-4874.
-
(2007)
Chem. Commun. (Cambridge)
, pp. 4872-4874
-
-
Liu, J.1
Lu, Y.2
-
18
-
-
33846913441
-
Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates
-
DOI 10.1093/nar/gkl1056
-
Chiuman, W., and Li, Y. (2007) Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates. Nucleic Acids Res. 35, 401-405. (Pubitemid 46232057)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.2
, pp. 401-405
-
-
Chiuman, W.1
Li, Y.2
-
19
-
-
38849109452
-
Parallel analysis of two analytes in solutions or on surfaces by using a bifunctional aptamer: Applications for biosensing and logic gate operations
-
DOI 10.1002/cbic.200700436
-
Elbaz, J., Shlyahovsky, B., Li, D., and Willner, I. (2008) Parallel analysis of two analytes in solutions or on surfaces by using a bifunctional aptamer: applications for biosensing and logic gate operations. ChemBioChem 9, 232-239. (Pubitemid 351196791)
-
(2008)
ChemBioChem
, vol.9
, Issue.2
, pp. 232-239
-
-
Elbaz, J.1
Shlyahovsky, B.2
Li, D.3
Willner, I.4
-
20
-
-
3242759845
-
Deoxyribozymes: Cleaving a path to clinical trials
-
Dass, C. R. (2004) Deoxyribozymes: cleaving a path to clinical trials. Trends Pharmacol. Sci. 25, 395-397.
-
(2004)
Trends Pharmacol. Sci.
, vol.25
, pp. 395-397
-
-
Dass, C.R.1
-
21
-
-
35648968173
-
Inhibition of beta-lactamase-mediated oxacillin resistance in Staphylococcus aureus by a deoxyribozyme
-
Hou, Z., Meng, J. R., Zhao, J. R., Hu, B. Q., Liu, J., Yan, X. J., Jia, M., and Luo, X. X. (2007) Inhibition of beta-lactamase-mediated oxacillin resistance in Staphylococcus aureus by a deoxyribozyme. Acta Pharmacol. Sin. 28, 1775-1782.
-
(2007)
Acta Pharmacol. Sin.
, vol.28
, pp. 1775-1782
-
-
Hou, Z.1
Meng, J.R.2
Zhao, J.R.3
Hu, B.Q.4
Liu, J.5
Yan, X.J.6
Jia, M.7
Luo, X.X.8
-
22
-
-
37549044256
-
HIV-1 VprB and C RNA cleavage by potent 10-23 DNAzymes that also cause reversal of G2 cell cycle arrest mediated by Vpr genes
-
Bano, A. S., Gupta, N., Sharma, Y., Sood, V., and Banerjea, A. C. (2007) HIV-1 VprB and C RNA cleavage by potent 10-23 DNAzymes that also cause reversal of G2 cell cycle arrest mediated by Vpr genes. Oligonucleotides. 17, 465-472.
-
(2007)
Oligonucleotides.
, vol.17
, pp. 465-472
-
-
Bano, A.S.1
Gupta, N.2
Sharma, Y.3
Sood, V.4
Banerjea, A.C.5
-
23
-
-
33845494065
-
Potent knock down of HIV-1 replication by targeting HIV-1 Tat/Rev RNA sequences synergistically with catalytic RNA and DNA
-
DOI 10.1097/QAD.0b013e3280118fb6, PII 0000203020070102000004
-
Sood, V., Unwalla, H., Gupta, N., Chakraborti, S., and Banerjea, A. C. (2007) Potent knock down of HIV-1 replication by targeting HIV-1 Tat/Rev RNA sequences synergistically with catalytic RNA and DNA. AIDS 21, 31-40. (Pubitemid 44912534)
-
(2007)
AIDS
, vol.21
, Issue.1
, pp. 31-40
-
-
Sood, V.1
Unwalla, H.2
Gupta, N.3
Chakraborti, S.4
Banerjea, A.C.5
-
24
-
-
2442429588
-
Effect of deoxyribozymes targeting c-Jun on solid tumor growth and angiogenesis in rodents
-
Zhang, G., Dass, C. R., Sumithran, E., Di Girolamo, N., Sun, L. Q., and Khachigian, L. M. (2004) Effect of deoxyribozymes targeting c-Jun on solid tumor growth and angiogenesis in rodents. J. Natl. Cancer Inst. 96, 683-696.
-
(2004)
J. Natl. Cancer Inst.
, vol.96
, pp. 683-696
-
-
Zhang, G.1
Dass, C.R.2
Sumithran, E.3
Di Girolamo, N.4
Sun, L.Q.5
Khachigian, L.M.6
-
25
-
-
39749165700
-
DNAzyme technology and cancer therapy: Cleave and let die
-
Dass, C. R., Choong, P. F., and Khachigian, L. M. (2008) DNAzyme technology and cancer therapy: cleave and let die. Mol. Cancer Ther. 7, 243-251.
-
(2008)
Mol. Cancer Ther.
, vol.7
, pp. 243-251
-
-
Dass, C.R.1
Choong, P.F.2
Khachigian, L.M.3
-
26
-
-
44349092480
-
DNAzymes for sensing, nanobiotechnology and logic gate applications
-
Willner, I., Shlyahovsky, B., Zayats, M., and Willner, B. (2008) DNAzymes for sensing, nanobiotechnology and logic gate applications. Chem. Soc. Rev. 37, 1153-1165.
-
(2008)
Chem. Soc. Rev.
, vol.37
, pp. 1153-1165
-
-
Willner, I.1
Shlyahovsky, B.2
Zayats, M.3
Willner, B.4
-
27
-
-
0037870470
-
Assemblage of signalingDNAenzymes with intriguing metal-ion specificities and pH dependences
-
Liu, Z., Mei, S. H., Brennan, J. D., and Li, Y. (2003) Assemblage of signalingDNAenzymes with intriguing metal-ion specificities and pH dependences. J. Am. Chem. Soc. 125, 7539-7545.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 7539-7545
-
-
Liu, Z.1
Mei, S.H.2
Brennan, J.D.3
Li, Y.4
-
28
-
-
0037438394
-
An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling
-
Mei, S. H., Liu, Z., Brennan, J. D., and Li, Y. (2003) An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling. J. Am. Chem. Soc. 125, 412-420.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 412-420
-
-
Mei, S.H.1
Liu, Z.2
Brennan, J.D.3
Li, Y.4
-
29
-
-
34250314557
-
Characterization of pH3DZ1-An RNA-cleaving deoxyribozyme with optimal activity at pH 3
-
Ali, M. M., Kandadai, S. A., and Li, Y. (2007) Characterization of pH3DZ1-An RNA-cleaving deoxyribozyme with optimal activity at pH 3. Can. J. Chem. 85, 261-273.
-
(2007)
Can. J. Chem.
, vol.85
, pp. 261-273
-
-
Ali, M.M.1
Kandadai, S.A.2
Li, Y.3
-
30
-
-
31144444656
-
Characterization of a catalytically efficient acidic RNA-cleaving deoxyribozyme
-
Kandadai, S. A., and Li, Y. (2005) Characterization of a catalytically efficient acidic RNA-cleaving deoxyribozyme. Nucleic Acids Res. 33, 7164-7175.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 7164-7175
-
-
Kandadai, S.A.1
Li, Y.2
-
31
-
-
33744915032
-
Phosphoestertransfer mechanism of an RNA-cleaving acidic deoxyribozyme revealed by radioactivity tracking and enzymatic digestion
-
Kandadai, S. A., Chiuman, W., and Li, Y. (2006) Phosphoestertransfer mechanism of an RNA-cleaving acidic deoxyribozyme revealed by radioactivity tracking and enzymatic digestion. Chem. Commun. (Cambridge), 2359-2361.
-
(2006)
Chem. Commun. (Cambridge)
, pp. 2359-2361
-
-
Kandadai, S.A.1
Chiuman, W.2
Li, Y.3
-
32
-
-
0036235747
-
Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes
-
Wang, W., Billen, L. P., and Li, Y. (2002) Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes. Chem. Biol. 9, 507-517.
-
(2002)
Chem. Biol.
, vol.9
, pp. 507-517
-
-
Wang, W.1
Billen, L.P.2
Li, Y.3
-
33
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
34
-
-
0027159426
-
Acid multimers of oligodeoxycytidine strands: Stoichiometry, base-pair characterization, and proton exchange properties
-
Leroy, J. L., Gehring, K., Kettani, A., and Gueron, M. (1993) Acid multimers of oligodeoxycytidine strands: stoichiometry, base-pair characterization, and proton exchange properties. Biochemistry 32, 6019-6031. (Pubitemid 23198762)
-
(1993)
Biochemistry
, vol.32
, Issue.23
, pp. 6019-6031
-
-
Leroy, J.-L.1
Gehring, K.2
Kettani, A.3
Gueron, M.4
|