Gene cloning and characterization of a deaminase from the 4-amino-3-hydroxybenzoate-assimilating Bordetella sp. strain 10d: Research letter

FEMS Microbiology Letters

Volumn 298, Issue 1, 2009, Pages 93-98

  Takenaka, Shinji ^a   Sato, Tomomi ^a   Koshiya, Jyun ^a   Murakami, Shuichiro ^a   Aoki, Kenji ^b  

^a KOBE UNIVERSITY   (Japan)

^b SAGAMI WOMEN'S UNIVERSITY   (Japan)

Author keywords

2 amino 5 carboxymuconic 6 semialdehyde; 2 amino 5 carboxymuconic 6 semialdehyde deaminase; 2 aminomuconate deaminase; 2 aminophenol derivative; 4 amino 3 hydroxybenzoate; Bordetella

Indexed keywords

2 AMINO 5 CARBOXYMUCONIC 6 SEMIALDEHYDE; 2 AMINOMUCONATE DEAMINASE DERIVATIVE; 2,3 DIOXYGENASE; 4 AMINO 3 HYDROXYBENZOATE; ALDEHYDE; BENZOIC ACID; DEAMINASE; DIOXYGENASE; LYSINE; UNCLASSIFIED DRUG;

AHDB GENE; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BORDETELLA; CATALYSIS; DEAMINATION; DECARBOXYLATION; ENZYME ANALYSIS; GENETIC CODE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MOLECULAR CLONING; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN PURIFICATION; PROTON NUCLEAR MAGNETIC RESONANCE;

AMINO ACID SEQUENCE; AMINOHYDROLASES; BACTERIAL PROTEINS; BORDETELLA; CLONING, MOLECULAR; CONSERVED SEQUENCE; DNA, BACTERIAL; ESCHERICHIA COLI; FATTY ACIDS, UNSATURATED; MOLECULAR SEQUENCE DATA; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

BORDETELLA; BORDETELLA SP.; ESCHERICHIA COLI;

EID: 68149129507     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2009.01699.x     Document Type: Article

References (18)

1. Aoki K, Kodama N, Murakami S Shinke R (1997) A high level of accumulation of 2-hydroxymuconic 6-semialdehyde from aniline by the transpositional mutant Y-2 of Pseudomonas species AW-2. Microbiol Res 152 : 129 135.
2. He Z Spain JC (1998) A novel 2-aminomuconate deaminase in the nitrobenzene degradation pathway of Pseudomonas pseudoalcaligenes JS45. J Bacteriol 180 : 2502 2506.
3. He Z Spain JC (2000) Reactions involved in the lower pathway for degradation of 4-nitrotoluene by Mycobacterium strain HL 4-NT-1. Appl Environ Microb 66 : 3010 3015.
4. Katsivela E, Wray V, Pieper DH Wittich RM (1999) Initial reactions in the biodegradation of 1-chloro-4-nitrobenzene by a newly isolated bacterium, strain LW1. Appl Environ Microb 65 : 1405 1412.
5. Koike K, Hakamada Y, Yoshimatsu T, Kobayashi T Ito S (1996) NADP-specific glutamate dehydrogenase from alkaliphilic Bacillus sp. KSM-635: purification and enzymatic properties. Biosci Biotech Bioch 60 : 1764 1767.
6. Lowry OH, Rosebrough NJ, Farr AL Randall RJ (1951) Protein measurement with the Folin phenol reagent. J Biol Chem 193 : 265 275.
7. Martynowski D, Eyobo Y, Li T, Yang K, Liu A Zhang H (2006) Crystal structure of α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase: insight into the active site and catalytic mechanism of a novel decarboxylation reaction. Biochemistry 45 : 10412 10421.
8. Miura R, Setoyama C, Nishina Y, Shiga K, Mizutani H, Miyahara I Hirotsu K (1997) Structural and mechanistic studies on d-amino acid oxidase × substrate complex: implications of the crystal structure of enzyme × substrate analog complex. J Biochem 122 : 825 833.
9. Murakami S, Sawami Y, Takenaka S Aoki K (2004) Cloning of a gene encoding 4-amino-3-hydroxybenzoate 2,3-dioxygenase from Bordetella sp. 10d. Biochem Bioph Res Co 314 : 489 494.
10. Muraki T, Taki M, Hasegawa Y, Iwai H Lau PC (2003) Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3- carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7. Appl Environ Microb 69 : 1564 1572.
11. Orii C, Takenaka S, Murakami S Aoki K (2004) A novel coupled enzyme assay reveals an enzyme responsible for the deamination of a chemically unstable intermediate in the metabolic pathway of 4-amino-3-hydroxybenzoic acid in Bordetella sp. strain 10d. Eur J Biochem 271 : 3248 3254.
12. Orii C, Takenaka S, Murakami S Aoki K (2006) Metabolism of 4-amino-3-hydroxybenzoic acid by Bordetella sp. strain 10d: a different modified meta-cleavage pathway for 2-aminophenol. Biosci Biotech Bioch 70 : 2653 2661.
13. Park HS Kim HS (2001) Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process. J Bacteriol 183 : 5074 5081.
14. Parsons L, Bonander N, Eisenstein E, Gilson M, Kairys V Orban J (2003) Solution structure and functional ligand screening of HI0719, a highly conserved protein from bacteria to humans in the YjgF/YER057c/UK114 family. Biochemistry 42 : 80 89.
15. Peres CM, Russ R, Lenke H Agathos SN (2001) Biodegradation of 4-nitrobenzoate, 4-aminobenzoate and their mixtures: new strains, unusual metabolites and insights into pathway regulation. FEMS Microbiol Ecol 37 : 151 159.
16. Spiess T, Desiere F, Fischer P, Spain JC, Kunackmuss HJ Lenke HA (1998) A new 4-nitrotoluene degradation pathway in a Mycobacterium strain. Appl Environ Microb 64 : 446 452.
17. Takenaka S, Murakami S, Kim YJ Aoki K (2000) Complete nucleotide sequence and functional analysis of the genes for 2-aminophenol metabolism from Pseudomonas sp. AP-3. Arch Microbiol 174 : 265 272.
18. Takenaka S, Asami T, Orii C, Murakami S Aoki K (2002) A novel meta-cleavage dioxygenase that cleaves a carboxyl-group-substituted 2-aminophenol. Purification and characterization of 4-amino-3-hydroxybenzoate 2,3-dioxygenase from Bordetella sp. strain 10d. Eur J Biochem 269 : 5871 5877.