-
1
-
-
38549144166
-
The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata
-
Liolios,K., Mavromatis,K., Tavernarakis,N. and Kyrpides,N.C. (2008) The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res., 36, D475-D479.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Liolios, K.1
Mavromatis, K.2
Tavernarakis, N.3
Kyrpides, N.C.4
-
2
-
-
37249005195
-
Steady progress and recent breakthroughs in the accuracy of automated genome annotation
-
Brent,M.R. (2008) Steady progress and recent breakthroughs in the accuracy of automated genome annotation. Nat. Rev. Genet., 9 62-73.
-
(2008)
Nat. Rev. Genet
, vol.9
, pp. 62-73
-
-
Brent, M.R.1
-
3
-
-
0036226603
-
BLAT - the BLAST-like alignment tool
-
Kent,W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res. 12, 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
4
-
-
0034129194
-
Optimal spliced alignment of homologous cDNA to a genomic DNA template
-
Usuka,J., Zhu,W. and Brendel,V. (2000) Optimal spliced alignment of homologous cDNA to a genomic DNA template. Bioinformatics, 16 203-211.
-
(2000)
Bioinformatics
, vol.16
, pp. 203-211
-
-
Usuka, J.1
Zhu, W.2
Brendel, V.3
-
5
-
-
17844407888
-
(2605) ECgene: Genome-based EST clustering and gene modeling for alternative splicing
-
Kim,N., Shin,S. and Lee,S. (2605) ECgene: Genome-based EST clustering and gene modeling for alternative splicing. Genome Res., 15, 566-576.
-
Genome Res
, vol.15
, pp. 566-576
-
-
Kim, N.1
Shin, S.2
Lee, S.3
-
6
-
-
18744383071
-
GMAP: A genomic mapping and alignment program for mRNA and EST sequences
-
Wu,T.D. and Watanabe,C.K. (2005) GMAP: A genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics, 21, 1859-1875.
-
(2005)
Bioinformatics
, vol.21
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
7
-
-
34548118821
-
PALMA: MRNA to genome alignments using large margin algorithms
-
Schulze,U., Hepp,B., Ong,C.S. and Rätsch,G. (2007) PALMA: MRNA to genome alignments using large margin algorithms. Bioinformatics, 23, 1892-1900.
-
(2007)
Bioinformatics
, vol.23
, pp. 1892-1900
-
-
Schulze, U.1
Hepp, B.2
Ong, C.S.3
Rätsch, G.4
-
8
-
-
43349092271
-
A space-efficient and accurate method for mapping -and aligning cDNA sequences onto genomic sequence
-
Gotoh,O. (2008) A space-efficient and accurate method for mapping -and aligning cDNA sequences onto genomic sequence. Nucleic Acids Res., 36, 2630-2638.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2630-2638
-
-
Gotoh, O.1
-
9
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
The ENCODE Project Consortium
-
The ENCODE Project Consortium. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447, 799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
-
10
-
-
33748641351
-
EGASP: The human ENCODE Genome Annotation Assessment Project
-
Guigó,R., Flicek,P., Abril,J.F, Reymond,A., Lagarde,J., Denoeud,F., Antonarakis,S., Ashburner,M., Bajic,V.B., Birney,E. et al. (2006) EGASP: The human ENCODE Genome Annotation Assessment Project. Genome Biol., 7(Suppl. 1), S2.1-31.
-
(2006)
Genome Biol
, vol.7
, Issue.SUPPL. 1
-
-
Guigó, R.1
Flicek, P.2
Abril, J.F.3
Reymond, A.4
Lagarde, J.5
Denoeud, F.6
Antonarakis, S.7
Ashburner, M.8
Bajic, V.B.9
Birney, E.10
-
11
-
-
62149125547
-
-
Coghlan,A., Fiedler,T.J., McKay,S.J., Flicek,P., Harris,T.W., Blasiar,D., the nGASP Consortium, and Stein,L.D. (2008) nGASP - the nematode genome annotation assessment project. BMC Bioinformatics, 9, 549.
-
Coghlan,A., Fiedler,T.J., McKay,S.J., Flicek,P., Harris,T.W., Blasiar,D., the nGASP Consortium, and Stein,L.D. (2008) nGASP - the nematode genome annotation assessment project. BMC Bioinformatics, 9, 549.
-
-
-
-
12
-
-
0027249595
-
dbEST - database for "expressed sequence tags
-
Boguski,M.S., Lowe,T.M. and Tolstoshev,C.M. (1993) dbEST - database for "expressed sequence tags". Nat. Genet., 4, 332-333.
-
(1993)
Nat. Genet
, vol.4
, pp. 332-333
-
-
Boguski, M.S.1
Lowe, T.M.2
Tolstoshev, C.M.3
-
13
-
-
33845984917
-
Gene discovery and annotation using LCM-454 transcriptome sequencing
-
Emrich,S.J., Barbazuk,W.B., Li,L. and Schnable,P.S. (2007) Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res., 17, 69-73.
-
(2007)
Genome Res
, vol.17
, pp. 69-73
-
-
Emrich, S.J.1
Barbazuk, W.B.2
Li, L.3
Schnable, P.S.4
-
14
-
-
33751017957
-
Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology
-
Cheung,F., Haas,B.J., Goldberg,S.M., May,G.D., Xiao,Y. and Town,C.D. (2006) Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. BMC Genomics, 7, 272.
-
(2006)
BMC Genomics
, vol.7
, pp. 272
-
-
Cheung, F.1
Haas, B.J.2
Goldberg, S.M.3
May, G.D.4
Xiao, Y.5
Town, C.D.6
-
15
-
-
0031732094
-
A computer program for aligning a cDNA sequence with a genomic DNA sequence
-
Florea,L., Hartzell,G., Zhang,Z., Rubin,G.M. and Miller,W. (1998) A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res., 8, 967-974.
-
(1998)
Genome Res
, vol.8
, pp. 967-974
-
-
Florea, L.1
Hartzell, G.2
Zhang, Z.3
Rubin, G.M.4
Miller, W.5
-
16
-
-
0042121209
-
MGAlignlt: A web service for the alignment of mRNA/EST and genomic sequences
-
Lee,B.T., Tan,T.W. and Ranganathan,S. (2003) MGAlignlt: A web service for the alignment of mRNA/EST and genomic sequences. Nucleic Acids Res., 31, 3533-3536.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3533-3536
-
-
Lee, B.T.1
Tan, T.W.2
Ranganathan, S.3
-
17
-
-
0035189310
-
Spidey: A tool for mRNA-to-genomic alignments
-
Wheelan,S.J., Church,D.M. and Ostell,J.M. (2001) Spidey: A tool for mRNA-to-genomic alignments. Genome Res., 11, 1952-1957.
-
(2001)
Genome Res
, vol.11
, pp. 1952-1957
-
-
Wheelan, S.J.1
Church, D.M.2
Ostell, J.M.3
-
18
-
-
51149117411
-
Analysis of alternative splicing in plants with bioinformatics tools
-
In-Reddy,A.S.N. and Golovkin,M, eds, Springer, Berlin Heidelberg, pp
-
Haas,B.J. (2008) Analysis of alternative splicing in plants with bioinformatics tools. In-Reddy,A.S.N. and Golovkin,M. (eds), Nuclear pre-mRNA Processing in Plants: Current Topics in Microbiology and Immunology, Vol. 326, Springer, Berlin Heidelberg, pp. 17-37.
-
(2008)
Nuclear pre-mRNA Processing in Plants: Current Topics in Microbiology and Immunology
, vol.326
, pp. 17-37
-
-
Haas, B.J.1
-
19
-
-
52049086511
-
Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii
-
Shen,Y., Liu,Y., Liu,L., Liang,C. and Li,Q.Q. (2008) Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii. Genetics, 179, 167-176.
-
(2008)
Genetics
, vol.179
, pp. 167-176
-
-
Shen, Y.1
Liu, Y.2
Liu, L.3
Liang, C.4
Li, Q.Q.5
-
20
-
-
33645515544
-
Genetic variation in the zebrafish
-
Guryev,V., Koudijs,M.J., Berezikov,E., Johnson,S.L., Plasterk,R.H., van Eeden,F.J. and Cuppen,E. (2006) Genetic variation in the zebrafish. Genome Res., 16, 491-497.
-
(2006)
Genome Res
, vol.16
, pp. 491-497
-
-
Guryev, V.1
Koudijs, M.J.2
Berezikov, E.3
Johnson, S.L.4
Plasterk, R.H.5
van Eeden, F.J.6
Cuppen, E.7
-
21
-
-
33846650692
-
Distinguishing cancer-associated missense mutations from common polymorphisms
-
Kaminker,J.S., Zhang,Y., Waugh,A., Haverty,P.M., Peters,B., Sebisanovic,D., Stinson,J., Forrest,W.F., Bazan,J.F., Seshagiri,S. et al. (2007) Distinguishing cancer-associated missense mutations from common polymorphisms. Cancer Res., 67, 465-573.
-
(2007)
Cancer Res
, vol.67
, pp. 465-573
-
-
Kaminker, J.S.1
Zhang, Y.2
Waugh, A.3
Haverty, P.M.4
Peters, B.5
Sebisanovic, D.6
Stinson, J.7
Forrest, W.F.8
Bazan, J.F.9
Seshagiri, S.10
-
22
-
-
0042121130
-
GeneSeqerΠlantGDB: Gene structure prediction in plant genomes
-
Schlueter,S.D., Dong,Q. and Brendel,V. (2003) GeneSeqerΠlantGDB: Gene structure prediction in plant genomes. Nucleic Acids Res., 31 3597-3600.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3597-3600
-
-
Schlueter, S.D.1
Dong, Q.2
Brendel, V.3
-
23
-
-
50649109231
-
Genome-wide analysis of alternative splicing in plants: Opportunities and challenges
-
Barbazuk,W.B., Fu,Y. and McGinnis,K.M. (2008) Genome-wide analysis of alternative splicing in plants: Opportunities and challenges. Genome Res., 18, 1381-1392.
-
(2008)
Genome Res
, vol.18
, pp. 1381-1392
-
-
Barbazuk, W.B.1
Fu, Y.2
McGinnis, K.M.3
|