메뉴 건너뛰기




Volumn 37, Issue SUPPL. 2, 2009, Pages

FMM: A web server for metabolic pathway reconstruction and comparative analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; BIOFUEL PRODUCTION; COMPUTER INTERFACE; CONTROLLED STUDY; DRUG MANUFACTURE; GENE MAPPING; GENETIC DATABASE; METABOLIC ENGINEERING; METABOLIC PARAMETERS; METABOLITE; MOLECULAR CLONING; NONHUMAN; ONLINE ANALYTICAL PROCESSING; PLANT GENETICS; PLANT METABOLISM; PRIORITY JOURNAL; PROTEIN PROCESSING; RICE; WEB BROWSER;

EID: 67849083088     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp264     Document Type: Article
Times cited : (87)

References (32)
  • 1
    • 49549115943 scopus 로고    scopus 로고
    • Synthetic biology through biomolecular design and engineering
    • Channon,K., Bromley,E.H. and Woolfson,D.N. (2008) Synthetic biology through biomolecular design and engineering. Curr. Opin. Struct. Biol., 18, 491-498.
    • (2008) Curr. Opin. Struct. Biol , vol.18 , pp. 491-498
    • Channon, K.1    Bromley, E.H.2    Woolfson, D.N.3
  • 2
    • 53049109464 scopus 로고    scopus 로고
    • De novo biosynthetic pathways: Rational design of microbial chemical factories
    • Prather,K.L. and Martin,C.H. (2008) De novo biosynthetic pathways: rational design of microbial chemical factories. Curr. Opin. Biotechnol., 19, 468-474.
    • (2008) Curr. Opin. Biotechnol , vol.19 , pp. 468-474
    • Prather, K.L.1    Martin, C.H.2
  • 3
    • 53049087092 scopus 로고    scopus 로고
    • Towards systems metabolic engineering of microorganisms for amino acid production
    • Park,J.H. and Lee,S.Y. (2008) Towards systems metabolic engineering of microorganisms for amino acid production. Curr. Opin. Biotechnol., 19, 454-460.
    • (2008) Curr. Opin. Biotechnol , vol.19 , pp. 454-460
    • Park, J.H.1    Lee, S.Y.2
  • 4
    • 0037271033 scopus 로고    scopus 로고
    • Amino acid production processes
    • Ikeda,M. (2003) Amino acid production processes. Adv. Biochem. Eng. Biotechnol., 79, 1-35.
    • (2003) Adv. Biochem. Eng. Biotechnol , vol.79 , pp. 1-35
    • Ikeda, M.1
  • 5
    • 0041836104 scopus 로고    scopus 로고
    • Global analyses of transcriptomes and proteomes of a parent strain and an L-threonine-overproducing mutant strain
    • Lee,J.H., Lee,D.E., Lee,B.U. and Kim,H.S. (2003) Global analyses of transcriptomes and proteomes of a parent strain and an L-threonine-overproducing mutant strain. J. Bacteriol., 185, 5442-5451.
    • (2003) J. Bacteriol , vol.185 , pp. 5442-5451
    • Lee, J.H.1    Lee, D.E.2    Lee, B.U.3    Kim, H.S.4
  • 6
    • 11144261828 scopus 로고    scopus 로고
    • A novel gnd mutation leading to increased L-lysine production in Corynebacterium glutamicum
    • Ohnishi,J., Katahira,R., Mitsuhashi,S., Kakita,S. and Ikeda,M. (2005) A novel gnd mutation leading to increased L-lysine production in Corynebacterium glutamicum. FEMS Microbiol. Lett., 242, 265-274.
    • (2005) FEMS Microbiol. Lett , vol.242 , pp. 265-274
    • Ohnishi, J.1    Katahira, R.2    Mitsuhashi, S.3    Kakita, S.4    Ikeda, M.5
  • 7
    • 0041387671 scopus 로고    scopus 로고
    • Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation
    • Ruckert,C., Puhler,A. and Kalinowski,J. (2003) Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation. J. Biotechnol, 104, 213-228.
    • (2003) J. Biotechnol , vol.104 , pp. 213-228
    • Ruckert, C.1    Puhler, A.2    Kalinowski, J.3
  • 8
    • 34249934691 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation
    • Park,J.H., Lee,K.H., Kim,T.Y. and Lee,S.Y. (2007) Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation. Proc. Natl Acad. Sci. USA, 104, 7797-7802.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 7797-7802
    • Park, J.H.1    Lee, K.H.2    Kim, T.Y.3    Lee, S.Y.4
  • 9
    • 44349190780 scopus 로고    scopus 로고
    • Investigations of valanimycin biosynthesis: Elucidation of the role of seryl-tRNA
    • Garg,R.P., Qian,X.L., Alemany,L.B., Moran,S. and Parry,R.J. (2008) Investigations of valanimycin biosynthesis: Elucidation of the role of seryl-tRNA. Proc. Natl Acad. Sci. USA, 105, 6543-6547.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 6543-6547
    • Garg, R.P.1    Qian, X.L.2    Alemany, L.B.3    Moran, S.4    Parry, R.J.5
  • 10
    • 38049001166 scopus 로고    scopus 로고
    • Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
    • Atsumi,S., Hanai,T. and Liao,J.C. (2008) Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature, 451, 86-89.
    • (2008) Nature , vol.451 , pp. 86-89
    • Atsumi, S.1    Hanai, T.2    Liao, J.C.3
  • 11
    • 38749148516 scopus 로고    scopus 로고
    • Keasling,J.D. (2008) Synthetic biology for synthetic chemistry. ACS Chem. Biol., 3, 64-76.
    • Keasling,J.D. (2008) Synthetic biology for synthetic chemistry. ACS Chem. Biol., 3, 64-76.
  • 12
    • 0003067660 scopus 로고    scopus 로고
    • Toward pathway engineering: A new database of genetic and molecular pathways
    • Kanehisa,M. (1996) Toward pathway engineering: A new database of genetic and molecular pathways. Sci. Technol. Japan, 59, 5.
    • (1996) Sci. Technol. Japan , vol.59 , pp. 5
    • Kanehisa, M.1
  • 15
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa,M. and Goto,S. (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 18
    • 58149185126 scopus 로고    scopus 로고
    • BRENDA, AMENDA and FRENDA the enzyme information system: New content and tools in 2009
    • Chang,A., Scheer,M., Grote,A., Schomburg,I. and Schomburg,D. (2009) BRENDA, AMENDA and FRENDA the enzyme information system: New content and tools in 2009. Nucleic Acids Res., 37, D588-592.
    • (2009) Nucleic Acids Res , vol.37
    • Chang, A.1    Scheer, M.2    Grote, A.3    Schomburg, I.4    Schomburg, D.5
  • 19
    • 63049115956 scopus 로고    scopus 로고
    • Li,Y., de Ridder,D., de Groot,M.J. and Reinders,M.J. (2008) Metabolic pathway alignment between species using a comprehensive and flexible similarity measure. BMC Syst. Biol., 2, 111.
    • Li,Y., de Ridder,D., de Groot,M.J. and Reinders,M.J. (2008) Metabolic pathway alignment between species using a comprehensive and flexible similarity measure. BMC Syst. Biol., 2, 111.
  • 20
    • 48449095981 scopus 로고    scopus 로고
    • Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms
    • Oehm,S., Gilbert,D., Tauch,A., Stoye,J. and Goesmann,A. (2008) Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. Nucleic Acids Res., 36, W433-437.
    • (2008) Nucleic Acids Res , vol.36
    • Oehm, S.1    Gilbert, D.2    Tauch, A.3    Stoye, J.4    Goesmann, A.5
  • 23
    • 58149178579 scopus 로고    scopus 로고
    • NCBI Reference Sequences: Current status, policy and new initiatives
    • Pruitt,K.D., Tatusova,T., Klimke,W. and Maglott,D.R. (2009) NCBI Reference Sequences: Current status, policy and new initiatives. Nucleic Acids Res., 37, D32-D36.
    • (2009) Nucleic Acids Res , vol.37
    • Pruitt, K.D.1    Tatusova, T.2    Klimke, W.3    Maglott, D.R.4
  • 24
    • 40549093032 scopus 로고    scopus 로고
    • A collection of plant-specific genomic data and resources at NCBI
    • Tatusova,T., Smith-White,B. and Ostell,J. (2007) A collection of plant-specific genomic data and resources at NCBI. Methods Mol. Biol. 406, 61-87.
    • (2007) Methods Mol. Biol , vol.406 , pp. 61-87
    • Tatusova, T.1    Smith-White, B.2    Ostell, J.3
  • 26
    • 0028786298 scopus 로고
    • Cinnamate 4-hydroxylase from Catharanthus roseus, and a strategy for the functional expression of plant cytochrome P450 proteins as translational fusions with P450 reductase in Escherichia coli
    • Hotze,M., Schroder,G. and Schroder,J. (1995) Cinnamate 4-hydroxylase from Catharanthus roseus, and a strategy for the functional expression of plant cytochrome P450 proteins as translational fusions with P450 reductase in Escherichia coli. FEBS Lett., 374, 345-350.
    • (1995) FEBS Lett , vol.374 , pp. 345-350
    • Hotze, M.1    Schroder, G.2    Schroder, J.3
  • 27
    • 0039552100 scopus 로고    scopus 로고
    • Three 4-coumarate:cOenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms
    • Ehlting,J., Buttner,D., Wang,Q., Douglas,C.J., Somssich,I.E. and Kombrink,E. (1999) Three 4-coumarate:cOenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms. Plant J., 19, 9-20.
    • (1999) Plant J , vol.19 , pp. 9-20
    • Ehlting, J.1    Buttner, D.2    Wang, Q.3    Douglas, C.J.4    Somssich, I.E.5    Kombrink, E.6
  • 28
    • 3242737570 scopus 로고    scopus 로고
    • Exploring recombinant flavonoid biosynthesis in metabolically engineered Escherichia coli
    • Watts,K.T., Lee,P.C. and Schmidt-Dannert,C. (2004) Exploring recombinant flavonoid biosynthesis in metabolically engineered Escherichia coli. Chembiochem, 5, 500-507.
    • (2004) Chembiochem , vol.5 , pp. 500-507
    • Watts, K.T.1    Lee, P.C.2    Schmidt-Dannert, C.3
  • 29
    • 43549122822 scopus 로고    scopus 로고
    • Nature's assembly line: Biosynthesis of simple phenylpropanoids and polyketides
    • Yu,O. and Jez,J.M. (2008) Nature's assembly line: Biosynthesis of simple phenylpropanoids and polyketides. Plant J., 54, 750-762.
    • (2008) Plant J , vol.54 , pp. 750-762
    • Yu, O.1    Jez, J.M.2
  • 30
    • 5144223780 scopus 로고    scopus 로고
    • Molecular basis of chemoprevention by resveratrol: NF-kappaB and AP-1 as potential targets
    • Kundu,J.K. and Surh,Y.J. (2004) Molecular basis of chemoprevention by resveratrol: NF-kappaB and AP-1 as potential targets. Mutat. Res., 555, 65-80.
    • (2004) Mutat. Res , vol.555 , pp. 65-80
    • Kundu, J.K.1    Surh, Y.J.2
  • 31
    • 33745006576 scopus 로고    scopus 로고
    • Progress in in silico functional genomics: The malaria Metabolic Pathways database
    • Ginsburg,H. (2006) Progress in in silico functional genomics: The malaria Metabolic Pathways database. Trends Parasitol., 22, 238-240.
    • (2006) Trends Parasitol , vol.22 , pp. 238-240
    • Ginsburg, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.