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Volumn 37, Issue 12, 2009, Pages 3981-3989

One RNA plays three roles to provide catalytic activity to a group I intron lacking an endogenous internal guide sequence

Author keywords

[No Author keywords available]

Indexed keywords

GUIDE RNA; RIBOSOME RNA; RIBOZYME;

EID: 67651154406     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp271     Document Type: Article
Times cited : (14)

References (41)
  • 1
    • 0020469973 scopus 로고
    • Making ends meet: A model for RNA splicing in fungal mitochondria
    • Davies,R.W., Waring,R.B., Ray,J.A., Brown,T.A. and Scazzochio,C. (1982) Making ends meet: A model for RNA splicing in fungal mitochondria. Nature, 300, 719-724.
    • (1982) Nature , vol.300 , pp. 719-724
    • Davies, R.W.1    Waring, R.B.2    Ray, J.A.3    Brown, T.A.4    Scazzochio, C.5
  • 2
    • 0024214064 scopus 로고
    • Conserved sequences and structures of group I introns: Building an active site for RNA catalysis - a review
    • Cech,T.R. (1988) Conserved sequences and structures of group I introns: building an active site for RNA catalysis - a review. Gene, 73 259-271.
    • (1988) Gene , vol.73 , pp. 259-271
    • Cech, T.R.1
  • 3
    • 0023056271 scopus 로고
    • One binding site determines sequence specificity of Tetrahymena pre-rRNA self-splicing, trans-splicing, and RNA enzyme activity
    • Been,M.D. and Cech,T.R. (1986) One binding site determines sequence specificity of Tetrahymena pre-rRNA self-splicing, trans-splicing, and RNA enzyme activity. Cell, 47, 207-216.
    • (1986) Cell , vol.47 , pp. 207-216
    • Been, M.D.1    Cech, T.R.2
  • 4
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel,F. and Westhof,E. (1990) Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol., 216, 585-610.
    • (1990) J. Mol. Biol , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 5
    • 0026599998 scopus 로고
    • Self-splicing introns in tRNA genes of widely divergent bacteria
    • Reinhold-Hurek,B. and Shub,D.A. (1992) Self-splicing introns in tRNA genes of widely divergent bacteria. Nature, 357, 173-176.
    • (1992) Nature , vol.357 , pp. 173-176
    • Reinhold-Hurek, B.1    Shub, D.A.2
  • 6
    • 0029805902 scopus 로고    scopus 로고
    • Ile of the purple bacterium Azoarcus
    • Ile of the purple bacterium Azoarcus. RNA, 2, 74-83.
    • (1996) RNA , vol.2 , pp. 74-83
    • Tanner, M.A.1    Cech, T.R.2
  • 7
    • 0032732707 scopus 로고    scopus 로고
    • Characterization of the Azoarcus ribozyme: Tight binding to guanosine and substrate by an unusually small group I ribozyme
    • Kuo,L.Y., Davidson,L.A. and Pico,S. (1999) Characterization of the Azoarcus ribozyme: Tight binding to guanosine and substrate by an unusually small group I ribozyme. Biochim. Biophys. Acta., 1489 281-292.
    • (1999) Biochim. Biophys. Acta , vol.1489 , pp. 281-292
    • Kuo, L.Y.1    Davidson, L.A.2    Pico, S.3
  • 8
    • 0007972388 scopus 로고
    • RNA structure, not sequence, determines the 50 splice-site specificity of a group I intron
    • Doudna,J.A., Cormack,B.P. and Szostak,J.W. (1989) RNA structure, not sequence, determines the 50 splice-site specificity of a group I intron. Proc. Natl Acad. Sci. USA, 86, 7402-7406.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 7402-7406
    • Doudna, J.A.1    Cormack, B.P.2    Szostak, J.W.3
  • 9
    • 0025300631 scopus 로고
    • Minimum secondary structure requirements for catalytic activity of a self-splicing group I intron
    • Beaudry,A.A. and Joyce,G.F. (1990) Minimum secondary structure requirements for catalytic activity of a self-splicing group I intron. Biochemistry, 29, 6534-6539.
    • (1990) Biochemistry , vol.29 , pp. 6534-6539
    • Beaudry, A.A.1    Joyce, G.F.2
  • 10
    • 0026017131 scopus 로고
    • Reconstitution of a group I intron self-splicing reaction with an activator RNA
    • van der Horst,G., Christian,A. and Inoue,T. (1991) Reconstitution of a group I intron self-splicing reaction with an activator RNA. Proc. Natl Acad. Sci. USA, 88, 184-188.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 184-188
    • van der Horst, G.1    Christian, A.2    Inoue, T.3
  • 11
    • 0025869745 scopus 로고
    • A multisubunit ribozyme that is a catalyst of and template for complementary strand RNA synthesis
    • Doudna,J.A., Couture,S. and Szostak,J.W. (1991) A multisubunit ribozyme that is a catalyst of and template for complementary strand RNA synthesis. Science, 251, 1605-1608.
    • (1991) Science , vol.251 , pp. 1605-1608
    • Doudna, J.A.1    Couture, S.2    Szostak, J.W.3
  • 12
    • 0029258956 scopus 로고
    • Self-assembly of a group I intron active site from its component tertiary structural domains
    • Doudna,J. and Cech,T.R. (1995) Self-assembly of a group I intron active site from its component tertiary structural domains. RNA, 1, 36-45.
    • (1995) RNA , vol.1 , pp. 36-45
    • Doudna, J.1    Cech, T.R.2
  • 13
    • 0028911157 scopus 로고
    • Novel system for analysis of group I 3′ splice site reactions based on functional trans-interaction of the P1/Pl0 reaction helix with the ribozyme's catalytic core
    • Chowrira,B.M., Berzal-Herranz,A. and Burke,J.M. (1995) Novel system for analysis of group I 3′ splice site reactions based on functional trans-interaction of the P1/Pl0 reaction helix with the ribozyme's catalytic core. Nucleic Acids Res., 23, 849-855.
    • (1995) Nucleic Acids Res , vol.23 , pp. 849-855
    • Chowrira, B.M.1    Berzal-Herranz, A.2    Burke, J.M.3
  • 14
    • 0031951385 scopus 로고    scopus 로고
    • Experimental evolution of complexity: In vitro emergence of intermolecular ribozyme interactions
    • Hanczyc,M. and Dorit,R.L. (1998) Experimental evolution of complexity: in vitro emergence of intermolecular ribozyme interactions. RNA, 4, 268-275.
    • (1998) RNA , vol.4 , pp. 268-275
    • Hanczyc, M.1    Dorit, R.L.2
  • 15
    • 0033118274 scopus 로고    scopus 로고
    • Trans-activation of the Tetrahymena group I intron ribozyme via a non-native RNA-RNA interaction
    • Ikawa,Y., Shiraishi,H. and Inoue,T. (1999) Trans-activation of the Tetrahymena group I intron ribozyme via a non-native RNA-RNA interaction. Nucleic Acids Res., 27, 1650-1655.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1650-1655
    • Ikawa, Y.1    Shiraishi, H.2    Inoue, T.3
  • 16
    • 0033756223 scopus 로고    scopus 로고
    • Minimal catalytic domain of a group I self-splicing intron RNA
    • Ikawa,Y., Shiraishi,H. and Inoue,T. (2000) Minimal catalytic domain of a group I self-splicing intron RNA. Nature Struct. Biol., 7, 1032-1035.
    • (2000) Nature Struct. Biol , vol.7 , pp. 1032-1035
    • Ikawa, Y.1    Shiraishi, H.2    Inoue, T.3
  • 17
    • 0027406037 scopus 로고
    • Requirements of a group I intron for reactions at the 3′ splice site
    • van der Horst,G. and Inoue,T. (1993) Requirements of a group I intron for reactions at the 3′ splice site. J. Mol. Biol., 229, 685-694.
    • (1993) J. Mol. Biol , vol.229 , pp. 685-694
    • van der Horst, G.1    Inoue, T.2
  • 18
    • 0034283819 scopus 로고    scopus 로고
    • Structure-function relationships of two closely related group IC3 intron ribozymes from Azoarcus and Synechococcus pre-tRNA
    • Ikawa,Y., Naito,D., Shiraishi,H. and Inoue,T. (2000) Structure-function relationships of two closely related group IC3 intron ribozymes from Azoarcus and Synechococcus pre-tRNA. Nucleic Acids Res., 28, 3269-3277.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3269-3277
    • Ikawa, Y.1    Naito, D.2    Shiraishi, H.3    Inoue, T.4
  • 20
    • 0029963656 scopus 로고    scopus 로고
    • A simple method for 3′-labeling of RNA
    • Huang,Z. and Szostak,J.W. (1996) A simple method for 3′-labeling of RNA. Nucleic Acids Res., 24, 4360-4361.
    • (1996) Nucleic Acids Res , vol.24 , pp. 4360-4361
    • Huang, Z.1    Szostak, J.W.2
  • 21
    • 33747378836 scopus 로고    scopus 로고
    • Self-assembly of a group I intron from inactive oligonucleotide fragments
    • Hayden,E.J. and Lehman,N. (2006) Self-assembly of a group I intron from inactive oligonucleotide fragments. Chem. Biol., 13, 909-918.
    • (2006) Chem. Biol , vol.13 , pp. 909-918
    • Hayden, E.J.1    Lehman, N.2
  • 22
    • 39149143346 scopus 로고    scopus 로고
    • Mechanisms of covalent self-assembly of the Azoarcus ribozyme from four fragment oligonucleotides
    • Draper,W.E., Hayden,E.J. and Lehman,N. (2008) Mechanisms of covalent self-assembly of the Azoarcus ribozyme from four fragment oligonucleotides. Nucleic Acids Res., 36, 520-531.
    • (2008) Nucleic Acids Res , vol.36 , pp. 520-531
    • Draper, W.E.1    Hayden, E.J.2    Lehman, N.3
  • 23
    • 54249138520 scopus 로고    scopus 로고
    • Systems chemistry on ribozyme self-construction: Evidence for anabolic autocatalysis in a recombination network
    • Hayden,E.J., von Kiedrowski,G. and Lehman,N. (2008) Systems chemistry on ribozyme self-construction: Evidence for anabolic autocatalysis in a recombination network. Angew. Chem. Int. Ed., 47, 8424-8428.
    • (2008) Angew. Chem. Int. Ed , vol.47 , pp. 8424-8428
    • Hayden, E.J.1    von Kiedrowski, G.2    Lehman, N.3
  • 24
    • 3042848954 scopus 로고    scopus 로고
    • Crystal structure of a self-splicing group I intron with both exons
    • Adams,P.L., Stahley,M.R., Kosek,A.B., Wang,J. and Strobel,S.A. (2004) Crystal structure of a self-splicing group I intron with both exons. Nature, 430, 45-50.
    • (2004) Nature , vol.430 , pp. 45-50
    • Adams, P.L.1    Stahley, M.R.2    Kosek, A.B.3    Wang, J.4    Strobel, S.A.5
  • 25
    • 0037452797 scopus 로고    scopus 로고
    • Assembly of core helicies and rapid tertiary folding of a small bacterial group I ribozyme
    • Rangan,P., Masquida,B., Westhof,E. and Woodson,S.A. (2003) Assembly of core helicies and rapid tertiary folding of a small bacterial group I ribozyme. Proc. Natl Acad. Sci. USA, 100, 1574-1579.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 1574-1579
    • Rangan, P.1    Masquida, B.2    Westhof, E.3    Woodson, S.A.4
  • 26
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • Crick,F.H.C. (1968) The origin of the genetic code. J. Mol. Biol., 38, 367-379.
    • (1968) J. Mol. Biol , vol.38 , pp. 367-379
    • Crick, F.H.C.1
  • 27
    • 0014369024 scopus 로고
    • Evolution of the genetic apparatus
    • Orgel,L.E. (1968) Evolution of the genetic apparatus. J. Mol. Biol. 38, 381-393.
    • (1968) J. Mol. Biol , vol.38 , pp. 381-393
    • Orgel, L.E.1
  • 28
    • 36849148382 scopus 로고
    • The RNA world
    • Gilbert,W. (1986) The RNA world. Nature, 319, 618.
    • (1986) Nature , vol.319 , pp. 618
    • Gilbert, W.1
  • 29
    • 0003604405 scopus 로고    scopus 로고
    • 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Gesteland,R.F., Cech,T.R. and Atkins,J.F. (2006) The RNA World, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (2006) The RNA World
    • Gesteland, R.F.1    Cech, T.R.2    Atkins, J.F.3
  • 30
    • 0034956301 scopus 로고    scopus 로고
    • The descent of polymerization
    • Levy,M. and Ellington,A.D. (2001) The descent of polymerization. Nat. Struct. Biol., 8, 580-582.
    • (2001) Nat. Struct. Biol , vol.8 , pp. 580-582
    • Levy, M.1    Ellington, A.D.2
  • 31
    • 0022649937 scopus 로고
    • The intervening sequence RNA of Tetrahymena is an enzyme
    • Zaug,A.J. and Cech,T.R. (1986) The intervening sequence RNA of Tetrahymena is an enzyme. Science, 231, 470-475.
    • (1986) Science , vol.231 , pp. 470-475
    • Zaug, A.J.1    Cech, T.R.2
  • 32
    • 0348136386 scopus 로고    scopus 로고
    • Generalized RNA-directed recombination of RNA
    • Riley,C.A. and Lehman,N. (2003) Generalized RNA-directed recombination of RNA. Chem. Biol., 10, 1233-1243.
    • (2003) Chem. Biol , vol.10 , pp. 1233-1243
    • Riley, C.A.1    Lehman, N.2
  • 33
    • 56149124653 scopus 로고    scopus 로고
    • A recombination-based model for the origin and early evolution of genetic information
    • Lehman,N. (2008) A recombination-based model for the origin and early evolution of genetic information. Chem. Biodivers, 5, 1707-1717.
    • (2008) Chem. Biodivers , vol.5 , pp. 1707-1717
    • Lehman, N.1
  • 34
    • 0026574207 scopus 로고
    • Recent evidence for the evolution of the genetic code
    • Osawa,S., Jukes,T.H., Watanabe,K. and Muto,A. (1992) Recent evidence for the evolution of the genetic code. Microbiol. Rev., 56, 229-264.
    • (1992) Microbiol. Rev , vol.56 , pp. 229-264
    • Osawa, S.1    Jukes, T.H.2    Watanabe, K.3    Muto, A.4
  • 35
    • 0029258928 scopus 로고
    • Keeping RNA happy
    • Uhlenbeck,O.C. (1995) Keeping RNA happy. RNA, 1, 1-4.
    • (1995) RNA , vol.1 , pp. 1-4
    • Uhlenbeck, O.C.1
  • 36
    • 0033485559 scopus 로고    scopus 로고
    • Non-unity molecular heritability demonstrated by continuous evolution in vitro
    • Schmitt,T. and Lehman,N. (1999) Non-unity molecular heritability demonstrated by continuous evolution in vitro. Chem. Biol., 6 857-869.
    • (1999) Chem. Biol , vol.6 , pp. 857-869
    • Schmitt, T.1    Lehman, N.2
  • 37
    • 0034667684 scopus 로고    scopus 로고
    • Placticity, evolvability, and modularity in RNA
    • Ancel,L.W. and Fontana,W. (2000) Placticity, evolvability, and modularity in RNA. J. Exp. Zool., 288, 242-283.
    • (2000) J. Exp. Zool , vol.288 , pp. 242-283
    • Ancel, L.W.1    Fontana, W.2
  • 38
    • 0034698298 scopus 로고    scopus 로고
    • One sequence, two ribozymes: Implications for the emergence of new ribozyme folds
    • Schultes,E.A. and Bartel,D.P. (2000) One sequence, two ribozymes: implications for the emergence of new ribozyme folds. Science, 289, 448-452.
    • (2000) Science , vol.289 , pp. 448-452
    • Schultes, E.A.1    Bartel, D.P.2
  • 39
    • 0017667182 scopus 로고
    • The hypercycle: A principle of natural self-organization. Part A: Emergence of the hypercycle
    • Eigen,M. and Schuster,P. (1977) The hypercycle: A principle of natural self-organization. Part A: Emergence of the hypercycle. Naturwissenschaften, 64, 541-565.
    • (1977) Naturwissenschaften , vol.64 , pp. 541-565
    • Eigen, M.1    Schuster, P.2
  • 41
    • 0037102491 scopus 로고    scopus 로고
    • The non-Watson-Crick base pairs and their associated isostericity matricies
    • Leontis,N.B., Stombaugh,J. and Westhof,E. (2002) The non-Watson-Crick base pairs and their associated isostericity matricies. Nucleic Acids Res., 30, 3497-3531.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3497-3531
    • Leontis, N.B.1    Stombaugh, J.2    Westhof, E.3


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