Niabella ginsengisoli sp. nov., isolated from soil cultivated with Korean ginseng

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 6, 2009, Pages 1282-1285

  Weon, Hang Yeon ^a   Yoo, Seung Hee ^b   Kim, Byung Yong ^b   Son, Jung A ^a   Kim, Yoo Jeong ^b   Kwon, Soon Wo ^b  

^a National Institute of Animal Science   (South Korea)

^b National Institute of Agricultural Science   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; RNA 16S; UBIQUINONE; BACTERIAL DNA; RIBOSOME DNA;

ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM ISOLATION; BACTEROIDETES; CONTROLLED STUDY; DNA BASE COMPOSITION; GRAM NEGATIVE AEROBIC RODS AND COCCI; GRAM STAINING; LIPID COMPOSITION; NIABELLA GINSENGISOLI; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA GENE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOIL MICROFLORA; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; GINSENG; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); PANAX GINSENG;

BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PANAX; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

EID: 67651092327     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.004333-0     Document Type: Article

References (15)

1. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
2. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
3. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
4. Kim, B.-Y., Weon, H.-Y., Yoo, S.-H., Hong, S.-B., Kwon, S.-W., Stackebrandt, E. & Go, S.-J. (2007). Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea. Int J Syst Evol Microbiol 57, 538-541.
5. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
6. Kwon, S.-W., Kim, J.-S., Park, I.-C., Yoon, S.-H., Park, D.-H., Lim, C.-K. & Go, S.-J. (2003). Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea. Int J Syst Evol Microbiol 53, 21-27.
7. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
8. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
9. Reichenbach, H. (1992). The order Cytophagales. In The Prokaryotes, 2nd edn, vol. 4, pp. 3631-3675. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
10. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
11. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
12. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
13. Weon, H. Y., Kim, B.-Y., Yoo, S.-H., Lee, S.-Y., Kwon, S.-W., Go, S.-J. & Stackebrandt, E. (2006). Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng. Int J Syst Evol Microbiol 56, 1777-1782.
14. Weon, H.-Y., Kim, B.-Y., Joa, J.-H., Kwon, S.-W., Kim, W.-G. & Koo, B.-S. (2008). Niabella soli sp. nov., isolated from soil from Jeju Island, Korea. Int J Syst Evol Microbiol 58, 467-469.
15. Xie, C. H. & Yokota, A. (2006). Reclassification of [Flavobacterium] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 1117-1121.