Sensing and responding to excess light

Annual Review of Plant Biology

Volumn 60, Issue , 2009, Pages 239-260

  Li, Zhirong ^a,b   Wakao, Setsuko ^a   Fischer, Beat B ^a   Niyogi, Krishna K ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

Chloroplast; Photoreceptor; Photosynthesis; Reactive oxygen species; Redox regulation; Retrograde signaling

Indexed keywords

REACTIVE OXYGEN METABOLITE; VISUAL PROTEINS AND PIGMENTS;

ARTICLE; LIGHT; METABOLISM; OXIDATION REDUCTION REACTION; PH; PHOTOSYNTHESIS; PHYSIOLOGY; PLANT; PLANT PHYSIOLOGY;

HYDROGEN-ION CONCENTRATION; LIGHT; OXIDATION-REDUCTION; PHOTORECEPTORS, PLANT; PHOTOSYNTHESIS; PLANT PHYSIOLOGICAL PHENOMENA; PLANTS; REACTIVE OXYGEN SPECIES;

ALGAE;

EID: 67651033747     PISSN: 15435008     EISSN: 15452123     Source Type: Book Series    
DOI: 10.1146/annurev.arplant.58.032806.103844     Document Type: Article

References (175)

1. Aarti D, Tanaka R, Ito H, Tanaka A. 2007. High light inhibits chlorophyll biosynthesis at the level of 5-aminolevulinate synthesis during de-etiolation in cucumber (Cucumis sativus) cotyledons. Photochem. Photobiol. 83:171-76
2. Aarti PD, Tanaka R, Tanaka A. 2006. Effects of oxidative stress on chlorophyll biosynthesis in cucumber (Cucumis sativus) cotyledons. Physiol. Plant. 128:186-97
3. Adamiec M, Drath M, Jackowski G. 2008. Redox state of plastoquinone pool regulates expression of Arabidopsis thaliana genes in response to elevated irradiance. Acta Biochim. Pol. 55:161-73
4. Ahmad M, Cashmore AR. 1993. HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor. Nature 366:162-66
5. Ahn SG, Thiele DJ. 2003. Redox regulation of mammalian heat shock factor 1 is essential for Hsp gene activation and protection from stress. Genes Dev. 17:516-28
6. Ahn TK, Avenson TJ, Ballottari M, Cheng Y-C, Niyogi KK, et al. 2008. Architecture of a charge-transfer state regulating light harvesting in a plant antenna protein. Science 320:794-99
7. Anderson JM, Price GD, Chow WS, Hope AB, Badger MR. 1997. Reduced levels of cytochrome bf omplex in transgenic tobacco leads to marked photochemical reduction of the plastoquinone pool, without significant change in acclimation to irradiance. Photosynth. Res. 53:215-27
8. Ankele E, Kindgren P, Pesquet E, Strand A. 2007. In vivo visualization of Mg-Protoporphyrin IX, a coordinator of photosynthetic gene expression in the nucleus and the chloroplast. Plant Cell 19:1964-79
9. Anwaruzzaman M, Chin BL, Li X-P, Lohr M, Martinez DA, Niyogi KK. 2004. Genomic analysis of mutants affecting xanthophyll biosynthesis and regulation of photosynthetic light harvesting in Chlamydomonas reinhardtii. Photosynth. Res. 82:265-76
10. Apel K, Hirt H. 2004. Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu. Rev. Plant Biol. 55:373-99
11. Asada K. 2006. Production and scavenging of reactive oxygen species in chloroplasts and their functions. Plant Physiol. 141:391-96
12. Baier M, Dietz KJ. 2005. Chloroplasts as source and target of cellular redox regulation: a discussion on chloroplast redox signals in the context of plant physiology. J. Exp. Bot. 56:1449-62
13. Ball L, Accotto G-P, Bechtold U, Creissen G, Funck D, et al. 2004. Evidence for a direct link between glutathione biosynthesis and stress defense gene expression in Arabidopsis. Plant Cell 16:2448-62
14. Ballottari M, Dall'Osto L, Morosinotto T, Bassi R. 2007. Contrasting behavior of higher plant photo-system I and II antenna systems during acclimation. J. Biol. Chem. 282:8747-958
15. Bechtold U, Richard O, Zamboni A, Gapper C, Geisler M, et al. 2008. Impact of chloroplastic- and extracellular-sourced ROS on high light-responsive gene expression in Arabidopsis. J. Exp. Bot. 59:121-33
16. Beck CF. 2005. Signaling pathways from the chloroplast to the nucleus. Planta 222:743-56
17. Bellafiore S, Bameche F, Peltier G, Rochaix J.-D. 2005. State transitions and light adaptation require chloroplast thylakoid protein kinase STN7. Nature 433:892-95
18. Bergantino E, Segalla A, Brunetta A, Teardo E, Rigoni F, et al. 2003. Light- and pH-dependent structural changes in the PsbS subunit of photosystem II. Proc. Natl. Acad. Sci. USA 100:15265-70
19. Bonardi V, Pesaresi P, Becker T, Schleiff E, Wagner R, et al. 2005. Photosystem II core phosphorylation and photosynthetic acclimation require two different protein kinases. Nature 437:1179-82
20. Bonente G, Howes BD, Caffarri S, Smulevich G, Bassi R. 2008. Interactions between the photosystem II subunit PsbS and xanthophylls studied in vivo and in vitro. J. Biol. Chem. 283:8434-45
21. Bugos RC, Yamamoto HY. 1996. Molecular cloning of violaxanthin de-epoxidase from romaine lettuce and expression in Escherichia coli. Proc. Natl. Acad. Sci. USA 93:6320-25
22. Chen YB, Durnford DG, Koblizek M, Falkowski PG. 2004. Plastid regulation of Lhcb1 transcription in the chlorophyte alga Dunaliella tertiokcta. Plant Physiol. 136:3737-50
23. Christie JM. 2007. Phototropin blue-light receptors. Annu. Rev. Plant Biol. 58:21-45
24. Cohen I, Knopf JA, Irihimovitch V, Shapira M. 2005. A proposed mechanism for the inhibitory effects of oxidative stress on Rubisco assembly and its subunit expression. Plant Physiol. 137:738-46
25. Cohen I, Sapir Y, Shapira M. 2006. A conserved mechanism controls translation of Rubisco large subunit in different photosynthetic organisms. Plant Physiol. 141:1089-97
26. Davison PA, Schubert HL, Reid JD, Iorg CD, Heroux A, et al. 2005. Structural and biochemical characterization of Gun4 suggests a mechanism for its role in chlorophyll biosynthesis. Biochemistry 44:7603-12
27. Davletova S, Rizhsky L, Liang H, Shengqiang Z, Oliver DJ, et al. 2005. Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis. Plant Cell 17:268-81
28. Davletova S, Schlauch K, Coutu J, Mittler R. 2005. The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol. 139:847-56
29. DeBlasio SL, Luesse DL, Hangarter RP. 2005. A plant-specific protein essential for blue-light-induced chloroplast movements. Plant Physiol. 139:101-14
30. Demmig-Adams B, Adams WW III. 1992. Photoprotection and other responses of plants to high light stress. Annu. Rev. Plant Physiol. Plant Mol. Biol. 43:599-626
31. Depège N, Bellafiore S, Rochaix J.-D. 2003. Role of chloroplast protein kinase Stt7 in LHCII phospho-rylation and state transition in Chlamydomonas. Science 299:1572-75
32. Dominici P, Caffarri S, Armenante F, Ceoldo S, Crimi M, Bassi R. 2002. Biochemical properties of the PsbS subunit of Photosystem II either purified from chloroplast or recombinant. J. Biol. Chem. 277:22750-58
33. Durnford DG, Falkowski PG. 1997. Chloroplast redox regulation of nuclear gene transcription during photoacclimation. Photosynth. Res. 53:229-41
34. Durnford DG, Price JA, McKim SM, Sarchfield ML. 2003. Light-harvesting complex gene expression is controlled by both transcriptional and post-transcriptional mechanisms during photoacclimation in Chlamydomonas reinhardtii. Physiol. Plant. 118:193-205
35. Escoubas J-M, Lomas M, LaRoche J, Falkowski PG. 1995. Light intensity regulation of cab gene transcription is signaled by the redox state of the plastoquinone pool. Proc. Natl. Acad. Sci. USA 92:10237-41
36. Fernandez AP, Strand A. 2008. Retrograde signaling and plant stress: plastid signals initiate cellular stress responses. Curr. Opin. Plant Biol. 11:509-13
37. Fey V, Wagner R, Brautigam K, Wirtz M, Hell R, et al. 2005. Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana. J. Biol. Chem. 280:5318-28
38. Fischer BB, Eggen RIL, Trebst A, Krieger-Liszkay A. 2006. The glutathione peroxidase homologous gene Gpxh in Chlamydomonas reinhardtii is upregulated by singlet oxygen produced in photosystem II. Planta 223:583-90
39. Fischer BB, Krieger-Liszkay A, Eggen RIL. 2004. Photosensitizers neutral red (type I) and rose bengal (type II) cause light-dependent toxicity in Chlamydomonas reinhardtii and induce the Gpxh gene via increased singlet oxygen formation. Environ. Sci. Technol. 38:6307-13
40. Fischer BB, Krieger-Liszkay A, Eggen RIL. 2005. Oxidative stress induced by the photosensitizers neutral red (type I) or rose bengal (type II) in the light causes different molecular responses in Chlamydomonas reinhardtii. Plant Sci. 168:747-59
41. Fischer BB, Krieger-Liszkay A, Hideg E, Snyrychova I, Wiesendanger M, Eggen RIL. 2007. Role of singlet oxygen in chloroplast to nucleus retrograde signaling in Chlamydomonas reinhardtii. FEBS Lett. 581:5555-60
42. Fischer BB, Wiesendanger M, Eggen RIL. 2006. Growth condition-dependent sensitivity, photodamage and stress response of Chlamydomonas reinhardtii exposed to high light conditions. Plant Cell Physiol. 47:1135-45
43. Foster KW, Saranak J, Patel N, Zarilli G, Okabe M, et al. 1984. A rhodopsin is the functional photore-ceptor for phototaxis in the unicellular eukaryote Chlamydomonas. Nature 311:756-59
44. Frigerio S, Campoli C, Zorzan S, Fantoni LI, Crosatti C, et al. 2007. Photosynthetic antenna size in higher plants is controlled by the plastoquinone redox state at the post-transcriptional rather than transcriptional level. J. Biol. Chem. 282:29457-69
45. Fryer MJ, Ball L, Oxborough K, Karpinski S, Mullineaux PM, Baker NR. 2003. Control of Ascorbate Peroxidase 2 expression by hydrogen peroxide and leaf water status during excess light stress reveals a functional organisation of Arabidopsis leaves. Plant J. 33:691-705
46. Funk C, Schroder WP, Napiwotzki A, Tjus SE, Renger G, Andersson B. 1995. The PSII-S protein of higher plants: a new type of pigment-binding protein. Biochemistry 34:11133-41
47. Gadjev I, Vanderauwera S, Gechev TS, Laloi C, Minkov IN, et al. 2006. Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis. Plant Physiol. 141:436-45
48. Gisselsson A, Szilagyi A, Akerlund H.-E. 2004. Role of histidines in the binding of violaxanthin de-epoxidase to the thylakoid membrane as studied by site-directed mutagenesis. Physiol. Plant. 122:337-43
49. Govorunova EG, Jung KH, Sineshchekov OA, Spudich JL. 2004. Chlamydomonas sensory rhodopsins A and B: cellular content and role in photophobic responses. Biophys. J. 86:2342-49
50. Grafies T, Pesaresi P, Schiavon F, Varotto C, Salamini F, et al. 2002. The role of ApH-dependent dissipation of excitation energy in protecting photosystem II against light-induced damage in Arabidopsis thaliana. Plant Physiol. Biochem. 40:41-49
51. Haehnel W. 1984. Photosynthetic electron transport in higher plants. Annu. Rev. Plant Physiol. 35:659-93
52. Hager A. 1969. Lichtebedingte pH-Erniedrigung in einem Chloroplasten-Kompartiment als Ursache der enzymatischen Violaxanthin- Zeaxanthin-Umwandlung: Beziehungen zur Photophosphorylierung. Planta 89:224-43
53. Hieber AD, Bugos RC, Verhoeven AS, Yamamoto HY. 2002. Overexpression of violaxanthin de-epoxidase: properties of C-terminal deletions on activity and pH-dependent lipid binding. Planta 214:476-83
54. Horton P, Johnson MP, Perez-Bueno ML, Kiss AZ, Ruban AV. 2008. Photosynthetic acclimation: does the dynamic structure and macro-organisation of photosystem II in higher plant grana membranes regulate light harvesting states? FEBSJ. 275:1069-79
55. Horton P, Ruban AV, Walters RG. 1996. Regulation of light harvesting in green plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47:655-84
56. Huala E, Oeller PW, Liscum E, Han IS, Larsen E, Briggs WR. 1997. Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain. Science 278:2120-23
57. Huner NPA, Oquist G, Sarhan F. 1998. Energy balance and acclimation to light and cold. Trends Plant Sci. 3:224-30
58. Eda A, Kazuoka T, Torikai S, Kikuchi H, Oeda K. 2000. A zinc finger protein RHL41 mediates the light acclimatization response in Arabidopsis. Plant J. 24:191-203
59. Im C-S, Zhang Z, Shrager J, Chang C-W, Grossman AR. 2003. Analysis of light and CO2 regulation in Chlamydomonas reinhardtii using genome-wide approaches. Photosynth. Res. 75:111-25
60. Irihimovitch V, Shapira M. 2000. Glutathione redox potential modulated by reactive oxygen species regulates translation of Rubisco large subunit in the chloroplast. J. Biol. Chem. 275:16289-95
61. Jansson S. 1999. A guide to the Lhc genes and their relatives in Arabidopsis. Trends Plant Sci. 4:236-40
62. Jarillo JA, Gabrys H, Capel J, Alonso JM, Ecker JR, Cashmore AR. 2001. Phototropin-related NPL1 controls chloroplast relocation induced by blue light. Nature 410:952-54
63. Johanningmeier U, Howell SH. 1984. Regulation of light-harvesting chlorophyll-binding protein mRNA accumulation in Chlamydomonas reinhardi. Possible involvement of chlorophyll synthesis precursors. J. Biol. Chem. 259:13541-49
64. Kadota A, Sato Y, Wada M. 2000. Intracellular chloroplast photorelocation in the moss Physcomitrella patens is mediated by phytochrome as well as by a blue-light receptor. Planta 210:932-37
65. Kagawa T, Kasahara M, Abe T, Yoshida S, Wada M. 2004. Function analysis of phototropin2 using fern mutants deficient in blue light-induced chloroplast avoidance movement. Plant Cell Physiol. 45:416-26
66. Kagawa T, Sakai T, Suetsugu N, Oikawa K, Ishiguro S, et al. 2001. Arabidopsis NPL1: a phototropin homolog controlling the chloroplast high-light avoidance response. Science 291:2138-41
67. Kanazawa A, Kramer DM. 2002. In vivo modulation of nonphotochemical exciton quenching (NPQ) by regulation of the chloroplast ATP synthase. Proc. Natl. Acad. Sci. USA 99:12789-94
68. Karpinski S, Escobar C, Karpinska B, Creissen G, Mullineaux PM. 1997. Photosynthetic electron transport regulates the expression of cytosolic ascorbate peroxidase genes in Arabidopsis during excess light stress. Plant Cell 9:627-40
69. Karpinski S, Reynolds H, Karpinska B, Wingsle G, Creissen G, Mullineaux P. 1999. Systemic signaling and acclimation in response to excess excitation energy in Arabidopsis. Science 284:654-57
70. Kasahara M, Kagawa T, Oikawa K, Suetsugu N, Miyao M, Wada M. 2002. Chloroplast avoidance movement reduces photodamage in plants. Nature 420:829-32
71. Kasahara M, Kagawa T, Sato Y, Kiyosue T, Wada M. 2004. Phototropins mediate blue and red light-induced chloroplast movements in Physcomitrella patens. Plant Physiol. 135:1388-97
72. Kawai H, Kanegae T, Christensen S, Kiyosue T, Sato Y, et al. 2003. Responses of ferns to red light are mediated by an unconventional photoreceptor. Nature 421:287-90
73. Kawano M, Kuwabara T. 2000. pH-dependent reversible inhibition of violaxanthin de-epoxidase by pepstatin related to protonation-induced structural change of the enzyme. FEBS Lett. 481:101-4
74. Kimura M, Manabe K, Abe T, Yoshida S, Matsui M, Yamamoto YY. 2003. Analysis of hydrogen peroxide-independent expression of the high-light-inducible ELIP2 gene with the aid of the ELIP2 promoter-luciferase fusion. Photochem. Photobiol. 77:668-74
75. Kimura M, Yamamoto YY, Seki M, Sakurai T, Sato M, et al. 2003. Identification of Arabidopsis genes regulated by high light-stress using cDNA microarray. Photochem. Photobiol. 77:226-33
76. Kimura M, Yoshizumi T, Manabe K, Yamamoto YY, Matsui M. 2001. Arabidopsis transcriptional regulation by light stress via hydrogen peroxide-dependent and -independent pathways. Genes Cells 6:607-17
77. Kleine T, Kindgren P, Benedict C, Hendrickson L, Strand A. 2007. Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance. Plant Physiol. 144:1391-406
78. Koussevitzky S, Nott A, Mockler TC, Hong F, Sachetto-Martins G, et al. 2007. Signals from chloroplasts converge to regulate nuclear gene expression. Science 316:715-19
79. Koziol AG, Borza T, Ishida K-I, Keeling P, Lee RW, Durnford DG. 2007. Tracing the evolution of the light-harvesting antennae in chlorophyll a/b-containing organisms. Plant Physiol. 143:1802-16
80. Krieger-Liszkay A. 2005. Singlet oxygen production in photosynthesis. J. Exp. Bot. 56:337-46
81. Kropat J, Oster U, Rudiger W, Beck CF. 2000. Chloroplast signalling in the light induction of nuclear HSP70 genes requires the accumulation of chlorophyll precursors and their accessibility to cytoplasm/nucleus. Plant J. 24:523-31
82. Külheim C, Ågren J, Jansson S. 2002. Rapid regulation of light harvesting and plant fitness in the field. Science 297:91-93
83. La Rocca N, Rascio N, Oster U, Rudiger W. 2001. Amitrole treatment of etiolated barley seedlings leads to deregulation of tetrapyrrole synthesis and to reduced expression of Lhc and RbcS genes. Planta 213:101-8
84. Laloi C, Stachowiak M, Pers-Kamczyc E, Warzych E, Murgia I, Apel K. 2007. Cross-talk between singlet oxygen- and hydrogen peroxide-dependent signaling of stress responses in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 104:672-77
85. Ledford HK, Baroli I, Shin JW, Fischer BB, Eggen RIL, Niyogi KK 2004. Comparative profiling of lipid-soluble antioxidants and transcripts reveals two phases of photo-oxidative stress in a xanthophyll-deficient mutant of Chlamydomonas reinhardtii. Mol. Genet. Genomics 272:470-79
86. Ledford HK, Chin BL, Niyogi KK. 2007. Acclimation to singlet oxygen stress in Chlamydomonas reinhardtii. Eukaryot. Cell 6:919-30
87. Lee KP, Kim C, Landgraf F, Apel K 2007. EXECUTER1- and EXECUTER2-dependent transfer of stress-related signals from the plastid to the nucleus of Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 104:10270-75
88. Lee S, Carlson T, Christian N, Lea K, Kedzie J, et al. 2000. The yeast heat shock transcription factor changes conformation in response to superoxide and temperature. Mol. Biol. Cell. 11:1753-64
89. Leisinger U, Rufenacht K, Fischer B, Pesaro M, Spengler A, et al. 2001. The glutathione peroxidase homologous gene from Chlamydomonas reinhardtii is transcriptionally up-regulated by singlet oxygen. Plant Mol. Biol. 46:395-408
90. Lermontova I, Grimm B. 2006. Reduced activity of plastid protoporphyrinogen oxidase causes attenuated photodynamic damage during high-light compared to low-light exposure. Plant J. 48:499-510
91. Li X-P, Björkman O, Shih C, Grossman AR, Rosenquist M, et al. 2000. A pigment-binding protein essential for regulation of photosynthetic light harvesting. Nature 403:391-95
92. Li X-P, Gilmore AM, Caffarri S, Bassi R, Golan T, et al. 2004. Regulation of photosynthetic light harvesting involves intrathylakoid lumen pH sensing by the PsbS protein. J. Biol. Chem. 279:22866-74
93. Li X-P, Müller-Moulé P, Gilmore AM, Niyogi KK. 2002. PsbS-dependent enhancement of feedback de-excitation protects photosystem II from photoinhibition. Proc. Natl. Acad. Sci. USA 99:15222-27
94. Li X-P, Phippard A, Pasari J, Niyogi KK. 2002. Structure-function analysis of Photosystem II subunit S (PsbS) in vivo. Funct. Plant Biol. 29:1131-39
95. Lin C, Yang H, Guo H, Mockler T, Chen J, Cashmore AR. 1998. Enhancement of blue-light sensitivity of Arabidopsis seedlings by a blue light receptor cryptochrome 2. Proc. Natl. Acad. Sci. USA 95:2686-90
96. Luesse DR, DeBlasio SL, Hangarter RP. 2006. Plastid movement impaired 2, a new gene involved in normal blue-light-induced chloroplast movements in Arabidopsis. Plant Physiol. 141:1328-37
97. Masuda T, Tanaka A, Melis A. 2003. Chlorophyll antenna size adjustments by irradiance in Dunaliella salina involve coordinate regulation of chlorophyll a oxygenase (CAO) and Lhcb gene expression. Plant Mol. Biol. 51:757-71
98. Maxwell DP, Laudenbach DE, Huner NPA. 1995. Redox regulation of light-harvesting complex II and cab mRNA abundance in Dunaliella salina. Plant Physiol. 109:787-95
99. McKim SM, Durnford DG. 2006. Translational regulation of light-harvesting complex expression during photoacclimation to high-light in Chlamydomonas reinhardtii. Plant Physiol. Biochem. 44:857-65
100. Melis A. 1991. Dynamics of photosynthetic membrane composition and function. Biochim. Biophys. Acta 1058:87-106
101. Meskauskiene R, Nater M, Goslings D, Kessler F, op den Camp R, Apel K. 2001. FLU. a negative regulator of chlorophyll biosynthesis in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 93:12026-34
102. Miller G, Mittler R. 2006. Could heat shock transcription factors function as hydrogen peroxide sensors in plants? Ann. Bot. 98:279-88
103. Mittler R, Kim Y, Song L, Coutu J, Coutu A, et al. 2006. Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress. FEBS Lett. 580:6537-42
104. Mittmann F, Brucker G, Zeidler M, Repp A, Abts T, et al. 2004. Targeted knockout in Physcomitrella reveals direct actions of phytochrome in the cytoplasm. Proc. Natl. Acad. Sci. USA 101:13939-44
105. Mochizuki N, Brusslan JA, Larkin R, Nagatani A, Chory J. 2001. Arabidopsis genomes uncoupled 5 (GUNS) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction. Proc. Natl. Acad. Sci. USA 98:2053-58
106. Mochizuki N, Tanaka R, Tanaka A, Masuda T, Nagatani A. 2008. The steady-state level of Mg-protoporphyrin IX is not a determinant of plastid-to-nucleus signaling in Arabidopsis. Proc. Natl. Acad. Sci. USA 105:15184-89
107. Montané M-H, Tardy F, Kloppstech K, Havaux M. 1998. Differential control of xanthophylls and light-induced stress proteins, as opposed to light-harvesting chlorophyll a/b proteins, during photosynthetic acclimation of barley leaves to light irradiance. Plant Physiol. 118:227-35
108. Morosinotto T, Bassi R, Frigerio S, Finazzi G, Morris E, Barber J. 2006. Biochemical and structural analyses of a higher plant photosystem II supercomplex of a photosystem I-less mutant of barley. Consequences of a chronic over-reduction of the plastoquinone pool. FEBS J. 273:4616-30
109. Moulin M, McCormac AC, Terry MJ, Smith AG. 2008. Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid nuclear signaling is not due to Mg-protoporphyrin IX accumulation. Proc. Natl. Acad. Sci. USA 105:15178-83
110. Müller P, Li X-P, Niyogi KK. 2001. Non-photochemical quenching. A response to excess light energy. Plant Physiol. 125:1558-66
111. Mullineaux P, Karpinski S. 2002. Signal transduction in response to excess light: getting out of the chloroplast. Curr. Opin. Plant Biol. 5:43-48
112. Mullineaux PM, Karpinski S, Baker NR. 2006. Spatial dependence for hydrogen peroxide-directed signaling in light-stressed plants. Plant Physiol. 141:346-50
113. Mullineaux PM, Rausch T. 2005. Glutathione, photosynthesis and the redox regulation of stressresponsive gene regulation. Photosynth. Res. 86:459-74
114. Murchie EH, Hubbart S, Peng S, Horton P. 2005. Acclimation of photosynthesis to high irradiance in rice: gene expression and interactions with leaf development. J. Exp. Bot. 56:449-60
115. Mussgnug JH, Wobbe L, Elles I, Claus C, Hamilton M, et al. 2005. NAB1 is an RNA binding protein involved in the light-regulated differential expression of the light-harvesting antenna of Chlamydomonas reinhardtii. Plant Cell 17:3409-21
116. Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, et al. 2002. Channelrhodopsin-1: alight-gated proton channel in green algae. Science 296:2395-98
117. Niyogi KK. 1999. Photoprotection revisited: genetic and molecular approaches. Annu. Rev. PlantPhysiol. Plant Mol. Biol. 50:333-59
118. Nott A, Jung H-S, Koussevitzky S, Chory J. 2006. Plastid-to-nucleus retrograde signaling. Annu. Rev. Plant Biol. 57:739-59
119. Nozue K, Kanegae T, Imaizumi T, Fukuda S, Okamoto H, et al. 1998. A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1. Proc. Natl. Acad. Sci. USA 95:15826-30
120. Oelze M-L, Kandlbinder A, Dietz K.-J. 2008. Redox regulation and overreduction control in the photo-synthesizing cell: complexity in redox regulatory networks. Biochim. Biophys. Acta 1780:1261-72
121. Oikawa K, Kasahara M, Kiyosue T, Kagawa T, Suetsugu N, et al. 2003. CHLOROPLAST UNUSUAL POSITIONING1 is essential for proper chloroplast positioning. Plant Cell 15:2805-15
122. op den Camp RGL, Przybyla D, Ochsenbein C, Laloi C, Kim C, et al. 2003. Rapid induction of distinct stress responses after the release of singlet oxygen in Arabidopsis. Plant Cell 15:2320-32
123. Ort DR. 2001. When there is too much light. Plant Physiol. 125:29-32
124. Panchuk II, Volkov RA, Schöffl F. 2002. Heat stress- and heat shock transcription factor-dependent expression and activity of ascorbate peroxidase in Arabidopsis. Plant Physiol. 129:838-53
125. Pesaresi P, Schneider A, Kleine T, Leister D. 2007. Interorganellar communication. Curr. Op. Plant Biol. 10:600-6
126. Peterson RB, Havir EA. 2001. Photosynthetic properties of an Arabidopsis thaliana mutant possessing a defective PsbS gene. Planta 214:142-52
127. Pfannschmidt T, Bräutigam K, Wagner R, Dietzel L, Schröter Y, et al. 2008. Potential regulation of gene expression in photosynthetic cells by redox and energy state: approaches towards better understanding. Ann. Bot.: doi: 10.1093/aob/mcn081
128. Pfannschmidt T, Nilsson A, Allen JF. 1999. Photosynthetic control of chloroplast gene expression. Nature 397:625-8
129. Pfundel EE, Dilley RA. 1993. The pH dependence of violaxanthin deepoxidation in isolated pea chloroplasts. Plant Physiol. 101:65-71
130. Pnueli L, Liang H, Rozenberg M, Mittler R. 2003. Growth suppression, altered stomatal responses, and augmented induction of heat shock proteins in cytosolic ascorbate peroxidase (Apxl)-deficient Arabidopsis plants. Plant J. 34:187-203
131. Pontier D, Albrieux C, Joyard J, Lagrange T, Block MA. 2007. Knock-out of the magnesium protopor-phyrin IX methyltransferase gene in Arabidopsis: effects on chloroplast development and on chloroplast-to-nucleus signaling. J. Biol. Chem. 282:2297-304
132. Richly E, Dietzmann A, Biehl A, Kurth J, Laloi C, et al. 2003. Covariations in the nuclear chloroplast transcriptome reveal a regulatory master-switch. EMBO Rep. 4:491-98
133. Rizhsky L, Davletova S, Liang H, Mittler R. 2004. The zinc finger protein Zat12 is required for cytosolic ascorbate peroxidase 1 expression during oxidative stress in Arabidopsis. J. Biol. Chem. 279:11736-43
134. Rizhsky L, Liang H, Mittler R. 2003. The water-water cycle is essential for chloroplast protection in the absence of stress. J. Biol. Chem. 278:38921-25
135. Rochaix J.-D. 2007. Role of thylakoid protein kinases in photosynthetic acclimation. FEBS Lett. 581:2768-75
136. Rossel JB, Walter PB, Hendrickson L, Chow WS, Poole A, et al. 2006. A mutation affecting ASCORBATE PEROXIDASE 2 gene expression reveals a link between responses to high light and drought tolerance. Plant Cell Environ. 29:269-81
137. Rossel JB, Wilson IW, Pogson BJ. 2002. Global changes in gene expression in response to high light in Arabidopsis. Plant Physiol. 130:1109-20
138. Rossel JB, Wilson PB, Hussain D, Woo NS, Gordon MJ, et al. 2007. Systemic and intracellular responses to photooxidative stress in Arabidopsis. Plant Cell 19:4091-110
139. Ruckle ME, DeMarco SM, Larkin RM. 2007. Plastid signals remodel light signaling networks and are essential for efficient chloroplast biogenesis in Arabidopsis. Plant Cell 19:3944-60
140. 2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions. Plant Physiol 136:2734-46
141. Scarped TE, Zanor MI, Carrillo N, Mueller-Roeber B, Valle EM. 2008. Generation of superoxide anion in chloroplasts of Arabidopsis thaliana during active photosynthesis: a focus on rapidly induced genes. Plant Mol. Biol. 66:361-78
142. Schultes NP, Peterson RB. 2007. Phylogeny-directed structural analysis of the Arabidopsis PsbS protein. Biochem. Biophys. Res. Comm. 355:464-70
143. Schurmann P, Buchanan BB. 2008. The ferredoxin/thioredoxin system of oxygenic photosynthesis. Antiox. Redox Signal. 10:1235-74
144. Shaikhali J, Heiber I, Seidel T, Ströher E, Hiltscher H, et al. 2008. The redox-sensitive transcription factor Rap2.4a controls nuclear expression of 2-Cys peroxiredoxin A and other chloroplast antioxidant enzymes. BMC Plant Biol. 8:48
145. Shao N, Krieger-Liszkay A, Schroda M, Beck CF. 2007. A reporter system for the individual detection of hydrogen peroxide and singlet oxygen: its use for the assay of reactive oxygen species produced in vivo. Plant J. 50:475-87
146. Shapira M, Lers A, Heifetz PB, Irihimovitz V, Osmond CB, et al. 1997. Differential regulation of chloroplast gene expression in Chlamydomonas reinhardtii during photoacclimation: light stress transiently suppresses synthesis of the Rubisco LSU protein while enhancing synthesis of the PS II D1 protein. Plant Mol. Biol. 33:1001-11
147. Sineshchekov OA, Jung KH, Spudich JL. 2002. Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. USA 99:8689-94
148. Snyder JW, Skovsen E, Lambert JD, Poulsen L, Ogilby PR. 2006. Optical detection of singlet oxygen from single cells. Phys. Chem. Chem. Phys. 8:4280-93
149. Storozhenko S, De Pauw P, Van Montagu M, Inzé D, Kushnir S. 1998. The heat-shock element is a functional component of the Arabidopsis APX1 gene promoter. Plant Physiol. 118:1005-14
150. Strand A, Asami T, Alonso J, Ecker JR, Chory J. 2003. Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrin IX. Nature 421:79-83
151. Suetsugu N, Mittmann F, Wagner G, Hughes J, Wada M. 2005. A chimeric photoreceptor gene, NEOCHROME, has arisen twice during plant evolution. Proc. Natl. Acad. Sci. USA 102:13705-9
152. Suetsugu N, Wada M. 2007. Phytochrome-dependent photomovement responses mediated by pho-totropin family proteins in cryptogam plants. Photochem. Photobiol. 83:87-93
153. Susek RE, Ausubel FM, Chory J. 1993. Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development. Cell 74:787-99
154. Suzuki T, Yamasaki K, Fujita S, Oda K, Iseki M, et al. 2003. Archaeal-type rhodopsins in Chlamydomonas: model structure and intracellular localization. Biochem. Biophys. Res. Commun. 301:711-17
155. Takizawa K, Cruz JA, Kanazawa A, Kramer DM. 2007. The thylakoid proton motive force in vivo. Quantitative, noninvasive probes, energetics, and regulatory consequences of light-induced pmf. Biochim. Biophys. Acta 1767:1233-44
156. 1 ATP synthase. Plant Cell Environ. 31:235-43
157. Tanaka R, Tanaka A. 2007. Tetrapyrrole biosynthesis in higher plants. Annu. Rev. Plant Biol. 58:321-46
158. Teramoto H, Nakamori A, Minagawa J, Ono T. 2002. Light-intensity- dependent expression of the Lhc gene family encoding light-harvesting chlorophyll-a/b proteins of photosystem II in Chlamydomonas reinhardtii. Plant Physiol. 130:325-33
159. Tikkanen M, Piippo M, Suorsa M, Sirpiö S, Mulo P, et al. 2006. State transitions revisited - a buffering system for dynamic low light acclimation of Arabidopsis. Plant Mol. Biol. 62:779-93
160. Tzvetkova-Chevolleau T, Franck F, Alawady AE, DalPOsto L, Carriere F, et al. 2007. The light stress-induced protein ELIP2 is a regulator of chlorophyll synthesis in Arabidopsis thaliana. Plant J. 50:795-809
161. Vandenabeele S, Vanderauwera S, Vuylsteke M, Rombauts S, Langebartels C, et al. 2004. Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana. Plant J. 39:45-58
162. Vanderauwera S, Zimmermann P, Rombauts S, Vandenabeele S, Langebartels C, et al. 2005. Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol. 139:806-21
163. Vasileuskaya Z, Oster U, Beck CF. 2004. Involvement of tetrapyrroles in interorganellar signaling in plants and algae. Photosynth. Res. 82:289-99
164. von Gromoff ED, Alawady A, Meinecke L, Grimm B, Beck CF. 2008. Heme, a plastid-derived regulator of nuclear gene expression in Chlamydomonas. Plant Cell 20:552-67
165. Wada M, Kagawa T, Sato Y. 2003. Chloroplast movement. Annu. Rev. Plant Biol. 54:455-68
166. Wagner D, Przybyla D, op den Camp R, Kim C, Landgraf F, et al. 2004. The genetic basis of singlet oxygen-induced stress responses of Arabidopsis thaliana. Science 306:1183-85
167. Walters RG. 2005. Towards an understanding of photosynthetic acclimation. J. Exp. Bot. 56:435-47
168. Walters RG, Rogers JJM, Shephard F, Horton P. 1999. Acclimation of Arabidopsis thaliana to the light environment: the role of photoreceptors. Planta 209:517-27
169. Wilson KE, Huner NPA. 2000. The role of growth rate, redox-state of the plastoquinone pool and the trans-thylakoid ApH in photoacclimation of Chlorella vulgaris to growth irradiance and temperature. Planta 212:93-102
170. Woodson JD, Chory J. 2008. Coordination of gene expression between organellar and nuclear genomes. Nat. Rev. Genet. 9:383-95
171. Yabuta Y, Maruta T, Yoshimura K, Ishikawa T, Shigeoka S. 2004. Two distinct redox signaling pathways for cytosolic APX induction under photooxidative stress. Plant Cell Physiol. 45:1586-94
172. Yamamoto HY, Bugos RC, Hieber AD. 1999. Biochemistry and molecular biology of the xanthophyll cycle. In The Photochemistry of Carotenoids, ed. HA Frank, AJ Young, G Britton, RJ Cogdell, pp. 293-303. Dordrecht: Kluwer Academic Publishers
173. Yamamoto HY, Higashi RM. 1978. Violaxanthin de-epoxidase, lipid composition and substrate specificity. Arch. Biochem. Biophys. 190:514-22
174. Yang D-H, Andersson B, Aro E-M, Ohad I. 2001. The redox state of the plastoquinone pool controls the level of the light-harvesting chlorophyll a/b binding protein complex II (LHC II) during photoacclimation. Photosynth. Res. 68:163-74
175. Zhong M, Orosz A, Wu C. 1998. Direct sensing of heat and oxidation by Drosophila heat shock transcription factor. Mol. Cell 2:101-8