Conformation and translational diffusion of a xanthan polyelectrolyte chain: Brownian dynamics simulation and single molecule tracking

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 79, Issue 5, 2009, Pages

  Chun, Myung Suk ^a   Kim, Chongyoup ^b   Lee, Duck E ^a  

^a Korea Institute of Science and Technology   (South Korea)

^b Korea University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ANIONIC POLY-ELECTROLYTES; BROWNIAN DYNAMICS SIMULATIONS; BULK SOLUTIONS; COARSE GRAINED MODELS; CONFINED SPACE; CONFORMATIONAL CHANGE; CONTOUR LENGTHS; DEBYE SCREENING; DISCRETIZATION; ELECTROLYTE SOLUTIONS; ELECTROSTATIC EFFECT; EXPERIMENTAL VERIFICATION; FLUORESCENCE MICROSCOPES; HYDRODYNAMIC INTERACTION; LENGTH SCALE; LITERATURE DATA; PERSISTENCE LENGTH; POLYELECTROLYTE CHAIN; SIMULATION PARAMETERS; SIMULATION PREDICTION; SINGLE MOLECULE; SINGLE-MOLECULE TRACKING; STRUCTURE AND DYNAMICS; TRANSLATIONAL DIFFUSION; WORM-LIKE CHAIN MODELS;

BIOPOLYMERS; BROWNIAN MOVEMENT; CONFORMATIONS; DYES; ELECTROSTATICS; FLUID DYNAMICS; LABELS; MOLECULES; POLYELECTROLYTES; POLYSACCHARIDES;

SIMULATORS;

EID: 67650941568     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.79.051919     Document Type: Article

References (42)

1. K. Kremer and K. Binder, Comput. Phys. Rep. 7, 259 (1988). 10.1016/0167-7977(88)90015-9
2. D. A. Hoagland and M. Muthukumar, Macromolecules 25, 6696 (1992). 10.1021/ma00050a046
3. Electrostatic Effects in Soft Matter and Biophysics, NATO Science Series II: Mathematics, Physics and Chemistry, edited by, C. Holm, P. Këkicheff, and, R. Podgornik, (Kluwer, Dordrecht, 2001), Vol. 46.
4. M. Daoud and P.-G. de Gennes, J. Phys. (France) 38, 85 (1977).
5. J. H. van Vliet and G. ten Brinke, J. Chem. Phys. 93, 1436 (1990). 10.1063/1.459153
6. J.-L. Barrat and J.-F. Joanny, Adv. Chem. Phys. 94, 1 (1996). 10.1002/9780470141533.ch1
7. A. V. Dobrynin and M. Rubinstein, Prog. Polym. Sci. 30, 1049 (2005). 10.1016/j.progpolymsci.2005.07.006
8. H. C. Öttinger, Stochastic Processes in Polymeric Fluids: Tools and Examples for Developing Simulation Algorithms (Springer, Heidelberg, 1996).
9. H. A. Jian, V. Vologodskii, and T. Schlick, J. Comput. Phys. 136, 168 (1997). 10.1006/jcph.1997.5765
10. J. S. Hur, E. S. G. Shaqfeh, and R. G. Larson, J. Rheol. 44, 713 (2000). 10.1122/1.551115
11. R. M. Jendrejack, D. C. Schwartz, M. D. Graham, and J. J. de Pablo, J. Chem. Phys. 119, 1165 (2003). 10.1063/1.1575200
12. R. M. D. Jendrejack, D. C. Schwartz, J. J. de Pablo, and M. D. Graham, J. Chem. Phys. 120, 2513 (2004). 10.1063/1.1637331
13. Y. L. Chen, M. D. Graham, J. J. de Pablo, G. C. Randall, M. Gupta, and P. S. Doyle, Phys. Rev. E 70, 060901 (R) (2004). 10.1103/PhysRevE.70.060901
14. D. E. Smith, T. T. Perkins, and S. Chu, Macromolecules 29, 1372 (1996). 10.1021/ma951455p
15. C. Haber, S. A. Ruiz, and D. Wirtz, Proc. Natl. Acad. Sci. U.S.A. 97, 10792 (2000). 10.1073/pnas.190320097
16. B. Maier and J. O. Rädler, Phys. Rev. Lett. 82, 1911 (1999). 10.1103/PhysRevLett.82.1911
17. B. Maier and J. O. Rädler, Macromolecules 33, 7185 (2000). 10.1021/ma000075n
18. B. Maier and J. O. Rädler, Macromolecules 34, 5723 (2001). 10.1021/ma002005m
19. A. Balducci, P. Mao, J. Han, and P. S. Doyle, Macromolecules 39, 6273 (2006). 10.1021/ma061047t
20. P.-K. Lin, C.-C. Fu, Y.-L. Chen, Y.-R. Chen, P.-K. Wei, C. H. Kuan, and W. S. Fann, Phys. Rev. E 76, 011806 (2007). 10.1103/PhysRevE.76.011806
21. J. Jeon and M.-S. Chun, J. Chem. Phys. 126, 154904 (2007). 10.1063/1.2723091
22. G. Paradossi and D. A. Brant, Macromolecules 15, 874 (1982). 10.1021/ma00231a035
23. T. Sato, T. Norisuye, and H. Fujita, Macromolecules 17, 2696 (1984). 10.1021/ma00142a043
24. M.-S. Chun and O. O. Park, Macromol. Chem. Phys. 195, 701 (1994). 10.1002/macp.1994.021950227
25. D. L. Ermak and J. A. McCammon, J. Chem. Phys. 69, 1352 (1978). 10.1063/1.436761
26. J. Rotne and S. Prager, J. Chem. Phys. 50, 4831 (1969). 10.1063/1.1670977
27. H. R. Warner, Ind. Eng. Chem. Fundam. 11, 379 (1972). 10.1021/i160043a017
28. B. T. Stokke, A. Elgsaeter, G. Skjåk-Brjek, and O. Smidsrød, Carbohydr. Res. 160, 13 (1987). 10.1016/0008-6215(87)80300-2
29. G. S. Manning, J. Chem. Phys. 51, 924 (1969). 10.1063/1.1672157
30. A. Dhar and D. Chaudhuri, Phys. Rev. Lett. 89, 065502 (2002). 10.1103/PhysRevLett.89.065502
31. M. Doi and S. F. Edwards, The Theory of Polymer Dynamics (Clarendon, Oxford, 1986).
32. B. Li, N. Madras, and A. D. Sokal, J. Stat. Phys. 80, 661 (1995). 10.1007/BF02178552
33. B. Dünweg and K. Kremer, J. Chem. Phys. 99, 6983 (1993). 10.1063/1.465445
34. H. Yamakawa and T. Yoshizaki, Macromolecules 13, 633 (1980). 10.1021/ma60075a029
35. T. Odijk, J. Polym. Sci., Polym. Phys. Ed. 15, 477 (1977). 10.1002/pol.1977.180150307
36. J. Skolnick and M. Fixman, Macromolecules 10, 944 (1977). 10.1021/ma60059a011
37. T. A. Camesano and K. J. Wilkinson, Biomacromolecules 2, 1184 (2001). 10.1021/bm015555g
38. W. E. Rochefort and S. Middleman, J. Rheol. 31, 337 (1987). 10.1122/1.549953
39. G. Holzwarth, Carbohydr. Res. 66, 173 (1978). 10.1016/S0008-6215(00) 83250-4
40. Y. Layec and C. Wolff, Rheol. Acta 13, 696 (1974). 10.1007/BF01527062
41. G. Muller, J. Lecourtier, G. Chauveteau, and C. Allain, Makromol. Chem., Rapid Commun. 5, 203 (1984). 10.1002/marc.1984.030050404
42. B. Tinland, G. Maret, and M. Rinaudo, Macromolecules 23, 596 (1990). 10.1021/ma00204a036