Transformation of vivianite by anaerobic nitrate-reducing iron-oxidizing bacteria

Geobiology

Volumn 7, Issue 3, 2009, Pages 373-384

  Miot, J ^a   Benzerara, K ^a   Morin, G ^a   Bernard, S ^b   Beyssac, O ^b   Larquet, E ^a   Kappler, A ^c   Guyot, F ^a  

^a UNIVERSITÉ PIERRE ET MARIE CURIE   (France)

^b ECOLE NORMALE SUPÉRIEURE   (France)

^c UNIVERSITY OF TÜBINGEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

FERRIC ION; FERROUS ION; NITRATE; PHOSPHATE;

ANOXIC CONDITIONS; CATALYSIS; ELECTRON MICROSCOPY; MINERALOGY; NITRIFYING BACTERIUM; PH; REDOX CONDITIONS; SOLUBILITY; TRANSFORMATION; TRANSMISSION ELECTRON MICROSCOPY; VIVIANITE;

ANAEROBIC GROWTH; ARTICLE; BACTERIUM; BIOTRANSFORMATION; METABOLISM; OXIDATION REDUCTION REACTION;

ANAEROBIOSIS; BACTERIA; BIOTRANSFORMATION; FERRIC COMPOUNDS; FERROUS COMPOUNDS; NITRATES; OXIDATION-REDUCTION; PHOSPHATES;

BACTERIA (MICROORGANISMS);

EID: 67650806128     PISSN: 14724677     EISSN: 14724669     Source Type: Journal    
DOI: 10.1111/j.1472-4669.2009.00203.x     Document Type: Article

References (47)

1. Adrian M, Dubochet J, Lepault J, MacDowall AW (1984) Cryo-electron microscopy of viruses. Nature 308, 32 36. (Pubitemid 14130928)
2. Benz M, Brune A, Schink B (1998) Anaerobic and aerobic oxidation of ferrous iron at neutral pH by chemohetereotrophic nitrate-reducing bacteria. Archives of Microbiology 169, 159 165. (Pubitemid 28109444)
3. Benzerara K, Yoon TH, Menguy N, Tyliszczak T, Brown GE Jr. (2005) Nanoscale environments associated with bioweathering of a Mg-Fe-pyroxene. Proceedings of the National Academy of Sciences of the USA 102, 979 982. (Pubitemid 40170711)
4. Benzerara K, Menguy N, Banerjee NR, Tyliszczak T, Guyot F, Brown GE Jr. (2007) Alteration of submarine basaltic glass from the Ontong Java Plateau: a STXM and TEM study. Earth and Planetary Science Letters 260, 187 200. (Pubitemid 47049504)
5. Bernard S, Benzerara K, Beyssac O, Menguy N, Guyot F, Brown GE, Goffé B (2007) Exceptional preservation of fossil plant spores in high-pressure metamorphic rocks. Earth and Planetary Science Letters 262, 257 272. (Pubitemid 47440462)
6. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry 72, 248 254.
7. Buffe J, De Vitre RR, Perret D, Leppard GG (1989) Physico-chemical characteristics of a colloidal iron phosphate species formed at the oxic-anoxic interface of a eutrophic lake. Geochimica et Cosmochimica Acta 53, 399 408.
8. Chaudhuri SK, Lack JG, Coates JD (2001) Biogenic magnetite formation through anaerobic biooxidation of Fe(II). Applied and Environmental Microbiology 67, 2844 2848. (Pubitemid 33639768)
9. Edwards KJ, Rogers DR, Wirsen CO, McCollom TM (2003) Isolation and characterization of a novel psychrophilic, neutrophilic, chemolithoautotrophic alpha- and gamma-Proteobacteria from the deep sea. Applied and Environmental Microbiology 69, 2906 2913. (Pubitemid 36560373)
10. Ehrenreich A, Widdel F (1994) Anaerobic oxidation of ferrous iron by purple bacteria, a new type of phototrophic metabolism. Applied and Environmental Microbiology 60, 4517 4526. (Pubitemid 24370823)
11. Engesgaard P, Kipp KL (1992) A geochemical transport model for redox-controlled movement of mineral fronts in groundwater-flow systems - a case of nitrate removal by oxidation of pyrite. Water Resources Research 28, 2829 2843. (Pubitemid 23377415)
12. 2O. Bulletin de Mineralogie 103, 135 138.
13. Fortin D, Leppard GG, Tessier A (1993) Characteristics of lacustrine diagenetic iron oxyhydroxides. Geochimica et Cosmochimica Acta 57, 4391 4404. (Pubitemid 24397085)
14. 4-floculated sludges. Water Research 31, 2449 2454.
15. Hafenbradl D, Keller M, Dirmeier R, Rachel R, Rossnagel P, Burggraf S, Huber H, Stetter KO (1996) Ferroglobus placidus gen nov, sp nov, a novel hyperthermophilic archeum that oxidizes Fe2+ at neutral pH under anoxic conditions. Archives of Microbiology 166, 308 314. (Pubitemid 26400533)
16. Hansen CBH, Poulsen IF (1999) Interaction of synthetic sulphate "green rust" with phosphate and the crystallization of vivianite. Clays and Clay Minerals 47, 312 318.
17. Heising S, Schink B (1998) Phototrophic oxidation of ferrous iron by a Rhodomicrobium vannielii strain. Microbiology 144, 2263 2269. (Pubitemid 28403040)
18. Hitchcock AP (2001) Soft X-ray spectromicroscopy of polymers and biopolymer interfaces. Journal of Synchrotron Radiation 8, 66 71. (Pubitemid 33661310)
19. Kappler A, Newman DK (2004) Formation of Fe(III)-minerals by Fe(II)-oxidizing phototrophic bacteria. Geochimica et Cosmochimica Acta 68, 1217 1226. (Pubitemid 38398587)
20. Kappler A, Schink B, Newman DK (2005) Fe(III) mineral formation and cell encrustation by the nitrate-dependent Fe(II)-oxidizer strain BoFeN1. Geobiology 3, 235 245. (Pubitemid 43357063)
21. Liu R, Zhao D (2007) In situ immobilization of Cu(II) in soils using a new class of iron phosphate nanoparticles. Chemosphere 68, 1867 1876. (Pubitemid 46907270)
22. Manning PG, Murphy TP, Prepas EE (1991) Intensive formation of vivianite in the bottom sediments of mesotrophic Narrow Lake, Alberta. Canadian Mineralogist 29, 77 85.
23. Miot J, Benzerara K, Morin G, Kappler A, Bernard S, Obst M, Férard C, Skouri-Panet F, Guigner JM, Posth N, Galvez M, Borwn GE Jr., Guyot F (2009) Iron biomineralization by anaerobic neutrophilic iron-oxidizing bacteria. Geochimica et Cosmochimica Acta 73, 696 711.
24. 2O. Geochimica et Cosmochimica Acta 36, 459 472.
25. Nriagu JO, Dell CI (1974) Diagenetic formation of iron phosphates in recent lake sediments. American Mineralogist 59, 934 946.
26. Paktunc D, Dutrizac J, Gertsman V (2008) Synthesis and phase transformations involving scorodite, ferric arsenate and arsenical ferrihydrite: implications for arsenic mobility. Geochimica et Cosmochimica Acta 72, 2649 2672.
27. Postma D, Boesen C, Kristiansen H, Larsen F (1991) Nitrate reduction in an unconfined sandy aquifer-water chemistry, reduction processes, and geochemical modelling. Water Resources Research 27, 2027 2045.
28. Pratesi G, Cipriani C, Giuli G, Birch WD (2003) Santabarbaraite: a new amorphous phosphate mineral. European Journal of Mineralogy 15, 185 192. (Pubitemid 36261145)
29. Putnis A, Putnis CV (2007) The mechanism of reequilibration of solids in the presence of a fluid phase. Journal of Solid State Chemistry 180, 1783 1786. (Pubitemid 46754326)
30. Sapota T, Aldahan A, Al-Aasm I (2006) Sedimentary facies and climate control on formation of vivianite and siderite microconcretions in sediments of Lake Baikal, Siberia. Journal of Paleolimnology 36, 245 257. (Pubitemid 44521466)
31. Schaedler S, Burkhardt C, Hegler F, Straub KL, Miot J, Benzerara K, Kappler A (2009) Formation of cell-iron-mineral aggregated by phototrophic and nitrate-reducing anaerobic Fe(II)-oxidizing bacteria. Geomicrobiology Journal 26, 93 103.
32. Schippers A, Jorgensen BB (2002) Biogeochemistry of pyrite and iron sulfide oxidation in marine sediments. Geochimica et Cosmochimica Acta 66, 85 92. (Pubitemid 34096386)
33. Schwertmann U, Friedl J, Pfab G (1996) A new iron(III) oxyhydroxynitrate. Journal of Solid State Chemistry 126, 336. (Pubitemid 126316239)
34. Sobolev D, Roden EE (2002) Evidence for rapid microscale bacterial redox cycling of iron in circumneutral environments. Antonie van Leuwenhoek 81, 587 597. (Pubitemid 35314641)
35. Straub KL, Buchholz-Cleven BEE (1998) Enumeration and detection of anaerobic ferrous iron-oxidizing, nitrate-reducing bacteria from diverse European sediments. Applied and Environmental Microbiology 64, 4846 4856. (Pubitemid 28557850)
36. Straub KL, Benz M, Schink B, Widdel F (1996) Anaerobic, nitrate-dependent microbial oxidation of ferrous iron. Applied and Environmental Microbiology 62, 1458 1460. (Pubitemid 26113236)
37. Thole BT, Van der Laan G, Fabrizio M (1994) Magnetic ground state properties and spectral distributions. I. X-ray absorption spectra. Physical Review. B, Condensed Matter 50, 11466 11473.
38. Ueshima M, Fortin D, Kalin M (2004) Development of iron-phosphate biofilms on pyritic mine waste rock surfaces previously treated with natural phosphate rocks. Geomicrobiology Journal 21, 313 323. (Pubitemid 38933552)
39. Van der Lee J (1998) Thermodynamical and mathematical concepts of CHESS. Technical Report. LHM/RD/98/39. CIG, Ecole des Mines de Paris, Fontainebleau, France.
40. Viollier E, Michard G, Jézéquel D, Pèpe M, Sarazin G (1997) Geochemical study of a crater lake: Lake Pavin, Puy de Dôme, France. Constraints afforded by the particulate matter distribution in the element cycling within the lake. Chemical Geology 142, 225 241.
41. Viollier E, Inglett PW, Hunter K, Roychoudhury AN, Van Cappellen P (2000) The ferrozine method revisited: Fe(II)/Fe(III) determination in natural waters. Applied Geochemistry 15, 785 790. (Pubitemid 30199492)
42. Von Guten U, Schneider W (1991) Primary products of oxygenation of iron(II) at an oxic-anoxic boundary: nucleation, aggregation and aging. Journal of Colloid and Interface Science 145, 127 139. (Pubitemid 21679418)
43. Webb S (2004) SIXPACK: a graphical user interface for XAS analysis using IFEFFIT. Physica Scripta 115, 1011 1014.
44. Weber KA, Picardal FW, Roden EE (2001) Microbially catalyzed nitrate-dependent oxidation of biogenic solid-phase Fe(II) compounds. Environmental Science and Technology 35, 1644 1650. (Pubitemid 32880804)
45. Widdel F, Schnell S, Heising S, Ehrenreich A, Assmus B, Schink B (1993) Ferrous iron oxidation by anoxygenic phototrophic bacteria. Nature 362, 834 836.
46. Wilke M, Farges F, Petit PE, Brown GE Jr., Martin F (2001) Oxidation state and coordination of Fe in minerals: An Fe K-XANES spectroscopic study. American Mineralogist 86, 714 730. (Pubitemid 32533383)
47. Winterer M (1997) XAFS - A data analysis program for material science. Journal of Physics IV 7, 243 244.