메뉴 건너뛰기




Volumn 6, Issue SUPPL. 4, 2009, Pages

Methods for improving simulations of biological systems: Systemic computation and fractal proteins

Author keywords

Modelling; Simulation; Systemic computation

Indexed keywords

BIOLOGICAL SYSTEMS; FRACTALS;

EID: 67650678391     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2008.0505.focus     Document Type: Review
Times cited : (16)

References (40)
  • 1
    • 67650671883 scopus 로고    scopus 로고
    • Adamatzky, A. (ed.) London, UK: Springer
    • Adamatzky, A. (ed.) 2002 Collision-based computing, vol.XXVII, p. 556. London, UK: Springer.
    • (2002) Collision-based Computing , vol.27 , pp. 556
  • 3
    • 3543083267 scopus 로고    scopus 로고
    • Fractal proteins
    • doi:10.1023/B:GENP.0000017011. 51324.d2
    • Bentley, P. J. 2004a Fractal proteins. J. Genet. Program Evol. Mach. 5, 71-101. (doi:10.1023/B:GENP.0000017011. 51324.d2)
    • (2004) J. Genet. Program Evol. Mach. , vol.5 , pp. 71-101
    • Bentley, P.J.1
  • 4
    • 4444347987 scopus 로고    scopus 로고
    • Evolving beyond perfection: An investigation of the effects of long-term evolution on fractal gene regulatory networks
    • doi:10.1016/j.biosystems.2004.05.019
    • Bentley, P. J. 2004b Evolving beyond perfection: an investigation of the effects of long-term evolution on fractal gene regulatory networks. BioSystems 76, 291-301. (doi:10.1016/j.biosystems.2004.05.019)
    • (2004) BioSystems , vol.76 , pp. 291-301
    • Bentley, P.J.1
  • 5
    • 15944396464 scopus 로고    scopus 로고
    • Controlling robots with fractal gene regulatory networks
    • (eds L. de Castro & F. von Zuben). Hershey, PA: Idea Group Inc.
    • Bentley, P. J. 2004c Controlling robots with fractal gene regulatory networks. In Recent developments in biologically inspired computing (eds L. de Castro & F. von Zuben). Hershey, PA: Idea Group Inc.
    • (2004) Recent Developments in Biologically Inspired Computing
    • Bentley, P.J.1
  • 6
    • 31044456848 scopus 로고    scopus 로고
    • Investigations into graceful degradation of evolutionary developmental software
    • doi:10.1007/s11047-005-3666-7
    • Bentley, P. J. 2005 Investigations into graceful degradation of evolutionary developmental software. J. Nat. Comput. 4, 417-437. (doi:10.1007/s11047-005-3666-7)
    • (2005) J. Nat. Comput. , vol.4 , pp. 417-437
    • Bentley, P.J.1
  • 7
    • 33847166922 scopus 로고    scopus 로고
    • Systemic computation: A model of interacting systems with natural characteristics
    • doi:10.1080/ 17445760601042803
    • Bentley, P. J. 2007 Systemic computation: a model of interacting systems with natural characteristics. Int. J. Parallel Emerg. Distrib. Syst. 22, 103-121. (doi:10.1080/ 17445760601042803)
    • (2007) Int. J. Parallel Emerg. Distrib. Syst. , vol.22 , pp. 103-121
    • Bentley, P.J.1
  • 8
    • 13944274132 scopus 로고    scopus 로고
    • Development, evaluation and benchmarking of simulation software for biomolecule-based computing
    • doi:10.1007/ s11047-004-2644-2649
    • Blain, D., Garzon, M., Shin, S.-Y., Zhang, B.-K., Kashiwamura, S., Yamamoto, M., Kameda, A. & Ohuchi, A. 2004 Development, evaluation and benchmarking of simulation software for biomolecule-based computing. Nat. Comput. 3, 427-442. (doi:10.1007/ s11047-004-2644-2649)
    • (2004) Nat. Comput. , vol.3 , pp. 427-442
    • Blain, D.1    Garzon, M.2    Shin, S.-Y.3    Zhang, B.-K.4    Kashiwamura, S.5    Yamamoto, M.6    Kameda, A.7    Ohuchi, A.8
  • 10
    • 85020817013 scopus 로고    scopus 로고
    • Artificial life XI
    • Bullock, S., Noble, J., Watson, R. & Bedau, M. A. (eds) Cambridge, MA: MIT Press
    • Bullock, S., Noble, J., Watson, R. & Bedau, M. A. (eds) 2008 Artificial life XI. In Proc. 11th Int. Conference on the Simulation and Synthesis of Living Systems. Cambridge, MA: MIT Press.
    • (2008) Proc. 11th Int. Conference on the Simulation and Synthesis of Living Systems
  • 11
    • 26444592298 scopus 로고    scopus 로고
    • Brane calculi - Interactions of biological membranes
    • Computational methods in systems biology (CMSB'04). Berlin, Germany: Springer
    • Cardelli, L. 2005 Brane calculi - interactions of biological membranes. In Computational methods in systems biology (CMSB'04). LNCS, vol.3082, pp. 257-280. Berlin, Germany: Springer.
    • (2005) LNCS , vol.3082 , pp. 257-280
    • Cardelli, L.1
  • 13
    • 0004080780 scopus 로고    scopus 로고
    • Artificial embryology and cellular differentiation
    • (ed. P. J. Bentley), ch. 12, London, UK: Academic Press
    • de Garis, H. 1999 Artificial embryology and cellular differentiation. In Evolutionary design by computers (ed. P. J. Bentley), ch. 12, pp. 281-295. London, UK: Academic Press.
    • (1999) Evolutionary Design by Computers , pp. 281-295
    • De Garis, H.1
  • 14
    • 48249110905 scopus 로고    scopus 로고
    • A system for modelling cell - Cell interactions during plant morphogenesis
    • doi:10. 1093/aob/mcm235
    • Dupuy, L., Mackenzie, J., Rudge, T. & Haseloff, J. 2007 A system for modelling cell - cell interactions during plant morphogenesis. J. Ann. Bot. 101, 1255-1265. (doi:10. 1093/aob/mcm235)
    • (2007) J. Ann. Bot. , vol.101 , pp. 1255-1265
    • Dupuy, L.1    Mackenzie, J.2    Rudge, T.3    Haseloff, J.4
  • 15
    • 0003377716 scopus 로고    scopus 로고
    • A principal exposition of Jean-Louis Le Moigne's systemic theory
    • Eriksson, D. 1997 A principal exposition of Jean-Louis Le Moigne's systemic theory. Rev. Cybernet. Hum. Knowing 4, 2-3.
    • (1997) Rev. Cybernet. Hum. Knowing , vol.4 , pp. 2-3
    • Eriksson, D.1
  • 19
    • 67650697959 scopus 로고    scopus 로고
    • Computational neuroscience (CNS*2008)
    • doi:10.1186/1471-2202-9-S1-I1
    • Holmes, W. R., Jung, R. & Roberts, P. 2008 Computational neuroscience (CNS*2008). BMC Neurosci. 9(Suppl. 1), I1. (doi:10.1186/1471-2202-9-S1- I1)
    • (2008) BMC Neurosci. , vol.9 , Issue.SUPPL. 1
    • Holmes, W.R.1    Jung, R.2    Roberts, P.3
  • 23
    • 34548101930 scopus 로고    scopus 로고
    • A systemic computation platform for the modelling and analysis of processes with natural characteristics
    • DOI 10.1145/1274000.1274037, Proceedings of GECCO 2007: Genetic and Evolutionary Computation Conference, Companion Material
    • Le Martelot, E., Bentley, P. J. & Lotto, R. B. 2007b A systemic computation platform for the modelling and analysis of processes with natural characteristics. In Proc. Genetic and Evolutionary Computation Conference (GECCO 2007 ) Workshop: Evolution of Natural and Artificial Systems - Metaphors and Analogies in Single and Multi-Objective Problems, pp. 2809-2816. (Pubitemid 47291078)
    • (2007) Proceedings of GECCO 2007: Genetic and Evolutionary Computation Conference, Companion Material , pp. 2809-2816
    • Le Martelot, E.1    Bentley, P.J.2    Lotto, R.B.3
  • 25
    • 51049120766 scopus 로고    scopus 로고
    • Eating data is good for your immune system: An artificial metabolism for data clustering using systemic computation
    • Proc. 8th Int. Conference on Artificial Immune Systems (ICARIS 2008) Springer
    • Le Martelot, E., Bentley, P. J. & Lotto, B. 2008b Eating data is good for your immune system: an artificial metabolism for data clustering using systemic computation. In Proc. 8th Int. Conference on Artificial Immune Systems (ICARIS 2008). Springer LNCS, vol.5132, pp. 412-423.
    • (2008) LNCS , vol.5132 , pp. 412-423
    • Le Martelot, E.1    Bentley, P.J.2    Lotto, B.3
  • 27
    • 0000511698 scopus 로고
    • The polyadic pi-calculus: A tutorial
    • (eds F. L. Hamer, W. Brauer & H. Schwichtenberg), Berlin, Germany: Springer
    • Milner, R. 1993 The polyadic pi-calculus: a tutorial. In Logic and algebra of specification (eds F. L. Hamer, W. Brauer & H. Schwichtenberg), pp. 203-246. Berlin, Germany: Springer.
    • (1993) Logic and Algebra of Specification , pp. 203-246
    • Milner, R.1
  • 28
    • 33750714034 scopus 로고    scopus 로고
    • Axioms for biographical structure
    • doi:10.1017/S096012 9505004809
    • Milner, R. 2005 Axioms for biographical structure. J. Math. Struct. Comput. Sci. 15, 1005-1032. (doi:10.1017/S096012 9505004809)
    • (2005) J. Math. Struct. Comput. Sci. , vol.15 , pp. 1005-1032
    • Milner, R.1
  • 29
    • 51249169747 scopus 로고
    • Proteins sequences as random fractals
    • doi:10.1007/ BF02703118
    • Mitra, C. K. & Rani, M. 1993 Proteins sequences as random fractals. J. Biosci. 18, 213-220. (doi:10.1007/ BF02703118)
    • (1993) J. Biosci. , vol.18 , pp. 213-220
    • Mitra, C.K.1    Rani, M.2
  • 32
    • 67650671881 scopus 로고    scopus 로고
    • Artificial genomes as models of gene regulation
    • (eds S. Kumar & P. J. Bentley), London, UK: Academic Press
    • Reil, T. 2003 Artificial genomes as models of gene regulation. In On growth form and computers (eds S. Kumar & P. J. Bentley), pp. 256-277. London, UK: Academic Press.
    • (2003) On Growth Form and Computers , pp. 256-277
    • Reil, T.1
  • 33
    • 33646015030 scopus 로고    scopus 로고
    • A computational model of cellular morphogenesis in plants
    • doi:10.1007/11553090-9
    • Rudge, T. & Haseloff, J. 2005 A computational model of cellular morphogenesis in plants. J. Adv. Artif. Life 3630, 78-87. (doi:10.1007/11553090- 9)
    • (2005) J. Adv. Artif. Life , vol.3630 , pp. 78-87
    • Rudge, T.1    Haseloff, J.2
  • 35
    • 34548860810 scopus 로고
    • Autopoiesis: The organization of living systems, its characterization and a model
    • doi:10.1016/0303- 2647(74)90031-8
    • Varela, F. J., Maturana, H. R. & Uribe, R. 1974 Autopoiesis: the organization of living systems, its characterization and a model. BioSystems 5, 187-196. (doi:10.1016/0303- 2647(74)90031-8)
    • (1974) BioSystems , vol.5 , pp. 187-196
    • Varela, F.J.1    Maturana, H.R.2    Uribe, R.3
  • 36
    • 0035763084 scopus 로고    scopus 로고
    • Can robots make good models of biological behaviour?
    • Webb, B. 2001 Can robots make good models of biological behaviour? Behav. Brain Sci. 24, 1033-1050. (doi:10.1017/ S0140525X01000127) (Pubitemid 35154176)
    • (2001) Behavioral and Brain Sciences , vol.24 , Issue.6 , pp. 1033-1050
    • Webb, B.1
  • 37
    • 0000420215 scopus 로고    scopus 로고
    • Genic representation: Reconciling content and causal complexity
    • 135. (doi:10.1093/bjps/50.1.103)
    • Wheeler, M. & Clark, A. 1999 Genic representation: reconciling content and causal complexity. Br. J. Philos. Sci. 50, 103 135. (doi:10.1093/bjps/50.1.103)
    • (1999) Br. J. Philos. Sci. , vol.50 , pp. 103
    • Wheeler, M.1    Clark, A.2
  • 38
    • 49649094766 scopus 로고    scopus 로고
    • Proc. 2008 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. doi:10.1186/1471-2105-9-S9-S1
    • Wren, J. D., Wilkins, D., Fuscoe, J. C., Bridges, S. Winters-Hilt, S. & Gusev, Y. 2008 In Proc. 2008 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinf. 9(Suppl. 9), S1. (doi:10.1186/1471-2105-9-S9-S1)
    • (2008) BMC Bioinf. , vol.9 , Issue.SUPPL. 9
    • Wren, J.D.1    Wilkins, D.2    Fuscoe, J.C.3    Bridges, S.4    Winters-Hilt, S.5    Gusev, Y.6
  • 39
    • 23844541826 scopus 로고    scopus 로고
    • System identification: A multi-signal approach for probing neural cardiovascular regulation
    • doi:10.1088/0967.3334/26/3/R01
    • Xinshu, X., Thomas, M. J. & Ramakrishna, M. 2005 System identification: a multi-signal approach for probing neural cardiovascular regulation. Physiol. Measurement 26, R41-R71. (doi:10.1088/0967.3334/26/3/R01)
    • (2005) Physiol. Measurement , vol.26
    • Xinshu, X.1    Thomas, M.J.2    Ramakrishna, M.3
  • 40
    • 59049088874 scopus 로고    scopus 로고
    • Tartarus and fractal gene regulatory networks with input
    • doi:10.1142/S0219525908001982
    • Zahadat, P. & Katebi, S. D. 2008 Tartarus and fractal gene regulatory networks with input. Adv. Complex Syst. 11, 803-829. (doi:10.1142/ S0219525908001982)
    • (2008) Adv. Complex Syst. , vol.11 , pp. 803-829
    • Zahadat, P.1    Katebi, S.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.