Engineering a unimolecular DNA-catalytic probe for single lead ion monitoring

Journal of the American Chemical Society

Volumn 131, Issue 23, 2009, Pages 8221-8226

  Wang, Hui ^a   Kim, Youngmi ^a   Liu, Haipeng ^a   Zhu, Zhi ^a   Bamrungsap, Suwussa ^a   Tan, Weihong ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL REACTIONS; CATALYTIC PROBES; CATALYZED REACTIONS; CLOSE PROXIMITY; DEGREE OF SENSITIVITY; DETECTION LIMITS; DETECTION RANGE; DNA MOLECULES; DNA STRANDS; DNAZYME; ENVIRONMENTAL MONITORING; FLUORESCENT FRAGMENTS; HAIRPIN STRUCTURES; HIGH SELECTIVITY; HIGH SENSITIVITY; LEAD IONS; LIMIT OF DETECTION; MOLECULAR ENGINEERING; PROBE DESIGN; QUENCHING OF THE FLUORESCENCE; SENSITIVE MEASUREMENT; SIGNAL AMPLIFICATIONS; SMALL MOLECULES; UNIMOLECULAR;

AMPLIFICATION; ATOMIC SPECTROSCOPY; DNA; FLUORESCENCE MICROSCOPY; FLUOROPHORES; GENES; LABELS; LEAD; LUTETIUM; METAL IONS; MONITORING; NUCLEIC ACIDS; PROBES; QUENCHING; REACTION KINETICS; RNA; SIGNAL PROCESSING; SUBSTRATES; TRACE ANALYSIS;

LEAD ALLOYS;

DNA; ENZYME; LEAD; RNA; DEOXYRIBOZYME;

ARTICLE; BIOENGINEERING; CATALYST; CHEMICAL REACTION KINETICS; CONTROLLED STUDY; DNA PROBE; DNA SEQUENCE; DNA STRAND; ENZYME ACTIVE SITE; ENZYME SUBSTRATE; FLUORESCENCE MICROSCOPY; ION MONITORING; SENSITIVITY AND SPECIFICITY; SPECTROSCOPY; CHEMICAL ENGINEERING; CHEMISTRY; ENVIRONMENTAL MONITORING; FLUORESCENCE; GENETIC PROCEDURES;

BIOSENSING TECHNIQUES; CHEMICAL ENGINEERING; DNA PROBES; DNA, CATALYTIC; ENVIRONMENTAL MONITORING; FLUORESCENCE; LEAD;

EID: 67650540766     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja901132y     Document Type: Article

References (39)

1. Liu, J; Lu, Y. Anal. Chem. 2003, 75, 6666-6672.
2. Navania, N. K.; Li, Y. Curr. Opin. Chem. Biol. 2006, 10, 272-281.
3. Zivarts, M.; Liu, Y.; Breaker, R. R. Nucleic Acids Res. 2005, 33, 622-631.
4. Mei, S. H.; Liu, Z.; Brennan, J. D.; Li, Y. J. Am. Chem. Soc. 2003, 125, 412-420.
5. Liu, Z.; Mei, S. H.; Brennan, J. D.; Li, Y. J. Am. Chem. Soc. 2005, 125, 7539-7545.
6. Hartig, J. S.; Najafi-Shoushtari, S. H.; Grune, I.; Yan, A.; Famulok, M. J. Am. Chem. Soc. 2004, 126, 722-723.
7. Pavlov, V.; Shlyahovsky, B. S.; Willner, I. J. Am. Chem. Soc. 2005, 127, 6522-6523.
8. Hartig, J. S.; Najafi-Shoushtari, S. H.; Grune, I.; Yan, A.; Ellington, A. D.; Famulok, M. Nat. Biotechnol. 2002, 20, 717-722.
9. Sokol, D. L.; Zhang, X.; Lu, P.; Gewirtz, A. M. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 11538-11543.
10. Perlette, J.; Tan, W. Anal. Chem. 2001, 73, 5544-5550.
11. Breaker, R. R.; Joyce, G. F. Chem. Biol. 1994, 1, 223-229.
12. Abdelgany, A.; Wood, M.; Beeson, D. J. Gene Med. 2007, 9, 727-738.
13. Faulhammer, D.; Famulok, M. Angew. Chem., Int. Ed. Engl. 1996, 35, 2837-2841.
14. Liu, J.; Brown, A. K.; Meng, X.; Cropek, D. M.; Istok, J. D.; Watson, D. B.; Lu, Y. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 2056-2061.
15. Lim, M. K.; Lippard, S. J. Acc. Chem. Res. 2007, 40, 41-51.
16. Todd, A. V.; Fuery, C. J.; Impey, H. L.; Applegate, T. L.; Haughton, M. A. Clin. Chem. 2000, 46, 625-630.
17. Lu, Y. Chem.-Eur. J. 2002, 8, 4588-4596.
18. Pan, T.; Uhlenbeck, O. C. Nature 1992, 358, 560-563.
19. Agency for Toxic Substances and Disease Registry. Toxicological Profile for Lead (Draft), Atlanta, U.S. Department of Health and Human Services, Public Health Service, 1992.
20. Lancer, F. EnViron. Health Perspect. 2008, 116.
21. Levin, R.; Brown, M. J.; Kashtock, M. E.; Jacobs, D. E.; Whelan, E. A.; Rodman, J.; Schock, M. R.; Padilla, A.; Sinks, T. Environ. Health Perspect. 2008, 116, 1285-1293.
22. Morbidity Mortality Weekly Report; Centers for Disease Control and Prevention: Atlanta, GA, 2009; Vol.58, pp 55-58.
23. Corrin, D. Identifying Lead in Your Home; Minnesota Extension Service, University of Minnesota, 1994; http://www.mes.umn.edu/Documents/B/D/BD658.html.
24. Needleman, H. Annu. Rev. Med. 2004, 55, 209-222.
25. Preventing Lead Poisoning in Young Children; Centers for Disease Control and Prevention: Atlanta, GA, 1985; Vol.34, pp 66-68, 73; http://www.cdc.gov/ mmwr/preview/mmwrhtml/00000659.htm.
26. Nigg, J. T.; Knottnerus, G. M.; Martel, M. M.; Nikolas, M.; Cavanagh, K.; Karmaus, W.; Rappley, M. D. Biol. Psychiatry 2008, 63, 325-331.
27. Riess, M. L.; Halm, J. K. J. Gen. Intern. Med. 2007, 22, 1212-1215.
28. National Primary Drinking Water Standards; U.S. Environmental Protection Agency: Washington, DC, 2003, EPA 816-F-01-001; http://www.epa.gov/safewater/ contaminants/index.html.
29. Beaucage, S. L.; Iyer, R. P. Tetrahedron 1992, 48, 2223-2311.
30. Beaucage, S. L.; Iyer, R. P. Tetrahedron 1993, 49, 6123-6194.
31. Tan, W.; Yeung, E. Anal. Chem. 1997, 69, 4242-4248.
32. Westhof, E.; Hermann, T. Nat. Struct. Biol. 1999, 6, 208-209.
33. Scott, W. G. Curr. Opin. Chem. Biol. 2000, 3, 705-709.
34. Brown, A. K.; Li, J.; Pavot, M. B.; Lu, Y. Biochemistry 2003, 42, 7152-7161.
35. Wolfrum, C.; Josten, A. Nucleosides, Nucleotides Nucleic Acids 2005, 24, 1069-1074.
36. Li, J.; Lu, Y. J. Am. Chem. Soc. 2000, 122, 10466-10467.
37. Li, J.; Lu, Y. J. Am. Chem. Soc. 2000, 122, 10466-10467.
38. Wu, J.; Yu, J.; Li, J.; Wang, J.; Ying, Y. Spectrochim. Acta, Part B 2007, 62, 1269-1272.
39. Yim, T. J.; Liu, J.; Lu, Y.; Kane, R. S.; Dordick, J. S. J. Am. Chem. Soc. 2005, 127, 12200-12201.