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Volumn 106, Issue 27, 2009, Pages 11212-11217

Programmed loss of millions of base pairs from a vertebrate genome

Author keywords

Chordate; Development; Lamprey; Petromyzon; Rearrangement

Indexed keywords

ANIMAL TISSUE; ARTICLE; BASE PAIRING; CELL LINEAGE; CONTROLLED STUDY; EMBRYO DEVELOPMENT; GENE LOCUS; GENE LOSS; GENE REARRANGEMENT; GENETIC REGULATION; GENETIC TRANSCRIPTION; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PETROMYZON; PRIORITY JOURNAL; SOMATIC CELL; VERTEBRATE;

EID: 67650503478     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0902358106     Document Type: Article
Times cited : (134)

References (34)
  • 1
    • 0033590754 scopus 로고    scopus 로고
    • Sex determination in sciarid flies: A model for the control of differential X-chromosome elimination
    • Sanchez L, Perondini ALP (1999) Sex determination in sciarid flies: A model for the control of differential X-chromosome elimination. J Theor Biol 197:247-259.
    • (1999) J Theor Biol , vol.197 , pp. 247-259
    • Sanchez, L.1    Perondini, A.L.P.2
  • 2
    • 0035119163 scopus 로고    scopus 로고
    • Chromosome elimination in sciarid flies
    • Goday C, Esteban MR (2001) Chromosome elimination in sciarid flies. Bioessays 23:242-250.
    • (2001) Bioessays , vol.23 , pp. 242-250
    • Goday, C.1    Esteban, M.R.2
  • 3
    • 33748582642 scopus 로고    scopus 로고
    • Chromatin diminution in the copepod Mesocyclops edax: Diminution of tandemly repeated DNA families from somatic cells
    • Drouin G (2006) Chromatin diminution in the copepod Mesocyclops edax: Diminution of tandemly repeated DNA families from somatic cells. Genome 49:657-665.
    • (2006) Genome , vol.49 , pp. 657-665
    • Drouin, G.1
  • 4
    • 0036579959 scopus 로고    scopus 로고
    • DNA sequences eliminated during chromatin diminution from somatic cell chromosomes of Cyclops kolensis
    • Degtyarev SV, et al. (2002) DNA sequences eliminated during chromatin diminution from somatic cell chromosomes of Cyclops kolensis. Dokl Biochem Biophys 384:148-151.
    • (2002) Dokl Biochem Biophys , vol.384 , pp. 148-151
    • Degtyarev, S.V.1
  • 5
    • 1642431644 scopus 로고    scopus 로고
    • Bachmann-Waldmann C, Jentsch S, Tobler H, Muller F (2004) Chromatin diminution leads to rapid evolutionary changes in the organization of the germline genomes of the parasitic nematodes A. suum and P. univalens. Mol Biochem Parasitol 134:53-64.
    • Bachmann-Waldmann C, Jentsch S, Tobler H, Muller F (2004) Chromatin diminution leads to rapid evolutionary changes in the organization of the germline genomes of the parasitic nematodes A. suum and P. univalens. Mol Biochem Parasitol 134:53-64.
  • 6
    • 41649113803 scopus 로고    scopus 로고
    • Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline
    • Duret L, et al. (2008) Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline. Genome Res 18:585-596.
    • (2008) Genome Res , vol.18 , pp. 585-596
    • Duret, L.1
  • 7
    • 27244436895 scopus 로고    scopus 로고
    • RNA-guided DNA deletion in Tetrahymena: An RNAi-based mechanism for programmed genome rearrangements
    • Yao MC, Chao JL (2005) RNA-guided DNA deletion in Tetrahymena: An RNAi-based mechanism for programmed genome rearrangements. Annu Rev Genet 39:537-559.
    • (2005) Annu Rev Genet , vol.39 , pp. 537-559
    • Yao, M.C.1    Chao, J.L.2
  • 8
    • 27844458601 scopus 로고    scopus 로고
    • Evolution of developmentally regulated genome rearrangements in eukaryotes
    • Zufall RA, Robinson T, Katz LA (2005) Evolution of developmentally regulated genome rearrangements in eukaryotes. J Exp Zoolog B Mol Dev Evol 304:448-455.
    • (2005) J Exp Zoolog B Mol Dev Evol , vol.304 , pp. 448-455
    • Zufall, R.A.1    Robinson, T.2    Katz, L.A.3
  • 9
    • 0035544484 scopus 로고    scopus 로고
    • Highly repetitive DNA families restricted to germ cells in a Japanese hagfish (Eptatretus burgeri): A hierarchical and mosaic structure in eliminated chromosomes
    • Kubota S, et al. (2001) Highly repetitive DNA families restricted to germ cells in a Japanese hagfish (Eptatretus burgeri): A hierarchical and mosaic structure in eliminated chromosomes. Genetica 111:319-328.
    • (2001) Genetica , vol.111 , pp. 319-328
    • Kubota, S.1
  • 10
    • 0002178208 scopus 로고    scopus 로고
    • Highly repetitive DNA sequences that are restricted to the germline in the hagfish Eptatretus cirrhatus: A mosaic of eliminated elements
    • Goto Y, Kubota S, Kohno S (1998) Highly repetitive DNA sequences that are restricted to the germline in the hagfish Eptatretus cirrhatus: A mosaic of eliminated elements. Chromosoma 107:17-32.
    • (1998) Chromosoma , vol.107 , pp. 17-32
    • Goto, Y.1    Kubota, S.2    Kohno, S.3
  • 11
    • 0030713351 scopus 로고    scopus 로고
    • A germline restricted, highly repetitive DNA sequence in Paramyxine atami: An interspecifically conserved, but somatically eliminated, element
    • Kubota S, Ishibashi T, Kohno S (1997) A germline restricted, highly repetitive DNA sequence in Paramyxine atami: An interspecifically conserved, but somatically eliminated, element. Mol Gen Genet 256:252-256.
    • (1997) Mol Gen Genet , vol.256 , pp. 252-256
    • Kubota, S.1    Ishibashi, T.2    Kohno, S.3
  • 12
    • 0027932381 scopus 로고
    • Extremely stable transcripts may compensate for the elimination of the gene fert-1 from all Ascaris lumbricoides somatic cells
    • Spicher A, Etter A, Bernard V, Tobler H, Muller F (1994) Extremely stable transcripts may compensate for the elimination of the gene fert-1 from all Ascaris lumbricoides somatic cells. Dev Biol 164:72-86.
    • (1994) Dev Biol , vol.164 , pp. 72-86
    • Spicher, A.1    Etter, A.2    Bernard, V.3    Tobler, H.4    Muller, F.5
  • 13
    • 0028064377 scopus 로고
    • Ribosomal heterogeneity from chromatin diminution in Ascaris lumbricoides
    • Etter A, Bernard V, Kenzelmann M, Tobler H, Muller F (1994) Ribosomal heterogeneity from chromatin diminution in Ascaris lumbricoides. Science 265:954-956.
    • (1994) Science , vol.265 , pp. 954-956
    • Etter, A.1    Bernard, V.2    Kenzelmann, M.3    Tobler, H.4    Muller, F.5
  • 14
    • 33947581390 scopus 로고    scopus 로고
    • The impact of translocations and gene fusions on cancer causation
    • Mitelman F, Johansson B, Mertens F (2007) The impact of translocations and gene fusions on cancer causation. Nat Rev Cancer 7:233-245.
    • (2007) Nat Rev Cancer , vol.7 , pp. 233-245
    • Mitelman, F.1    Johansson, B.2    Mertens, F.3
  • 17
    • 34548168615 scopus 로고    scopus 로고
    • Ancient evolutionary origin of the neural crest gene regulatory network
    • Sauka-Spengler T, Meulemans D, Jones M, Bronner-Fraser M (2007) Ancient evolutionary origin of the neural crest gene regulatory network. Dev Cell 13:405-420.
    • (2007) Dev Cell , vol.13 , pp. 405-420
    • Sauka-Spengler, T.1    Meulemans, D.2    Jones, M.3    Bronner-Fraser, M.4
  • 18
    • 34548822178 scopus 로고    scopus 로고
    • Evolutionary perspectives from development of mesodermal components in the lamprey
    • Kusakabe R, Kuratani S (2007) Evolutionary perspectives from development of mesodermal components in the lamprey. Dev Dyn 236:2410-2420.
    • (2007) Dev Dyn , vol.236 , pp. 2410-2420
    • Kusakabe, R.1    Kuratani, S.2
  • 19
    • 58149484872 scopus 로고    scopus 로고
    • Dissecting early regulatory relationships in the lamprey neural crest gene network
    • Nikitina N, Sauka-Spengler T, Bronner-Fraser M (2008) Dissecting early regulatory relationships in the lamprey neural crest gene network. Proc Natl Acad Sci USA 105:20083-20088.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 20083-20088
    • Nikitina, N.1    Sauka-Spengler, T.2    Bronner-Fraser, M.3
  • 20
    • 0142152986 scopus 로고    scopus 로고
    • Expression of foreign genes in lamprey embryos: An approach to study evolutionary changes in gene regulation
    • Kusakabe R, Tochinai S, Kuratani S (2003) Expression of foreign genes in lamprey embryos: An approach to study evolutionary changes in gene regulation. J Exp Zoolog B Mol Dev Evol 296:87-97.
    • (2003) J Exp Zoolog B Mol Dev Evol , vol.296 , pp. 87-97
    • Kusakabe, R.1    Tochinai, S.2    Kuratani, S.3
  • 21
    • 85030949372 scopus 로고    scopus 로고
    • Washington University Genome Sequencing Center, Available at, Accessed January 9, 2009
    • Washington University Genome Sequencing Center, Washington University School of Medicine. Available at http://genome.wustl.edu/pub/organism/Other- Vertebrates/Petromyzon-marinus/assembly/Petromyzon-marinus-3.0/. Accessed January 9, 2009.
    • Washington University School of Medicine
  • 22
    • 0016238047 scopus 로고
    • Observations on early germ cell development and premeiotic ribosomal DNA amplification in Xenopus laevis
    • Kalt MR, Gall JG (1974) Observations on early germ cell development and premeiotic ribosomal DNA amplification in Xenopus laevis. J Cell Biol 62:460-472.
    • (1974) J Cell Biol , vol.62 , pp. 460-472
    • Kalt, M.R.1    Gall, J.G.2
  • 23
    • 33846033400 scopus 로고    scopus 로고
    • CDD: A conserved domain database for interactive domain family analysis
    • Marchler-Bauer A, et al. (2007) CDD: A conserved domain database for interactive domain family analysis. Nucleic Acids Res 35:D237-D240.
    • (2007) Nucleic Acids Res , vol.35
    • Marchler-Bauer, A.1
  • 24
    • 51649155464 scopus 로고
    • Estimation of nuclear DNA contents in plants by flow cytometry
    • Arumuganathan K, Earle ED (1991) Estimation of nuclear DNA contents in plants by flow cytometry. Plant Mol Biol Rep 9:229-241.
    • (1991) Plant Mol Biol Rep , vol.9 , pp. 229-241
    • Arumuganathan, K.1    Earle, E.D.2
  • 25
    • 0001383018 scopus 로고    scopus 로고
    • Construction of P1 artificial chromosome (PAC) libraries from lower vertebrates
    • eds Lai E, Birren B Academic, San Diego, pp
    • Amemiya CT, Ota T, Litman GW (1996)Construction of P1 artificial chromosome (PAC) libraries from lower vertebrates. Analysis of Nonmammalian genomes, eds Lai E, Birren B (Academic, San Diego), pp 223-256.
    • (1996) Analysis of Nonmammalian genomes , pp. 223-256
    • Amemiya, C.T.1    Ota, T.2    Litman, G.W.3
  • 27
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 28
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 29
    • 0006479633 scopus 로고
    • University of Washington, Seattle, Available at
    • Green P (1994) Phrap: Phragment Assembly Program (University of Washington, Seattle). Available at www.phrap.org/phredphrapconsed.html.
    • (1994) Phrap: Phragment Assembly Program
    • Green, P.1
  • 31
    • 0025128991 scopus 로고
    • High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones
    • Lichter P, et al. (1990) High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247:64-69.
    • (1990) Science , vol.247 , pp. 64-69
    • Lichter, P.1
  • 33
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • eds Misener S, Krawetz SA Humana Press, Clifton, NJ, pp
    • Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology, eds Misener S, Krawetz SA (Humana Press, Clifton, NJ), pp 365-386.
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 34
    • 0000073385 scopus 로고
    • Normal stages of development in the lamprey Lampetra reissneri (Dybowski)
    • Tahara Y (1988) Normal stages of development in the lamprey Lampetra reissneri (Dybowski) Zoolog Sci 5:109-118.
    • (1988) Zoolog Sci , vol.5 , pp. 109-118
    • Tahara, Y.1


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