Seasonal and spatial variation of bacterial community structure in river-mouth areas of gokasho bay, Japan

Microbes and Environments

Volumn 23, Issue 4, 2008, Pages 277-284

  Sakami, Tomoko ^a  

^a FISHERIES RESEARCH AGENCY   (Japan)

Author keywords

Bacterial community composition; PCR DGGE; Seasonal variation

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 67650434450     PISSN: 13426311     EISSN: 13426311     Source Type: Journal    
DOI: 10.1264/jsme2.ME08513     Document Type: Article

References (25)

1. Bernhard, A.E., D. Colbert, J. McManus, and K.G. Field. 2005. Microbial community dynamics based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries. FEMS Microbiol. Ecol. 52:115-128.
2. Bouvier, T.C., and P.A. del Giorgio. 2002. Compositional changes in free-living bacterial communities along with a salinity gradient in two temperate estuaries. Limnol. Oceanogr. 47:453-1170
3. Capone, D.G. 2000. The marine microbial nitrogen cycle, p. 455-494. In D.L. Kirchman (ed.), Microbial Ecology of the Oceans. Wiley- Liss, New York, NY.
4. Chin-Leo, G., and R. Benner. 1992. Enhanced bacterioplankton production and respiration at intermediate salinities in the Mississippi River plume. Mar. Ecol. Prog. Ser. 87:87-103.
5. Chrost, R.J., and H. Rai. 1993. Ectoenzyme activity and bacterial secondary production in nutrient-impoverished and nutrient-enriched freshwater mesocosms. Microb. Ecol. 25:131-150.
6. Cottrell, M.T., and D.L. Kirchman. 2003. Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary. Limnol. Oceanogr. 48:167-178.
7. Pearl, H.W., J. Dyble, P.H. Misander, R.T. Noble, M.F. Piehler, J.L. Pinckney, T.F. Steppe, L. Twomey, and L.M. Valdes. 2003. Micro- bial indicators of aquatic ecosystem change: current applications to eutrophication studies. FEMS Microbiol. Ecol. 46:233-246.
8. Pinhassi, J., F. Azam, J. Hemphala, R.A. Long, J. Martinez, U.L. Zweifel, and A. Hagstrom. 1999. Coupling between bacterioplankton species composition, population dynamics, and organic matter degradation. Aquat. Microb. Ecol. 17:13-26.
9. Pinhassi, J., and A. Hagstrom. 2000. Seasonal succession in marine bacterioplankton. Aquat. Microb. Ecol. 21:245-256.
10. Porter, K.G., and Y.S. Feig. 1980. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25:943-948.
11. Riemann, L., G.F. Steward, and F. Azam. 2000. Dynamics of bacterial community composition and activity during a mesocosms diatom bloom. Appl. Environ. Microbiol. 66:578-587.
12. Rooney-Varga, J.N., M.W. Giewat, M.C. Savin, S. Sood, M. LeGresley, and J.L. Martin. 2005. Links between phytoplankton and bacterial community dynamics in a coastal marine environment. Microb. Ecol. 49:163-175.
13. Sakami, T., K. Abo, K. Takayanagi, and S. Toda. 2003. Effects of water mass exchange on bacterial communities in an aquaculture area during summer. Est. Coast. Shelf Sci. 56:111-118.
14. Schauer, M., R. Massana, and P. Carlos. 2000. Spatial differences in bacterioplankton composition along the Catalan coast (NW Mediterranean) assessed by molecular fingerprinting. FEMS Microbiol. Ecol. 33: 51-59.
15. Selje, N., and M. Simon. 2003. Composition and dynamics of particle-associated and free-living bacterial communities in the Weser Estuary, Germany. Aquat. Microb. Ecol. 30:221-237.
16. Shiah, F., and H.W. Ducklow. 1994. Temperature regulation of heterotrophic bacterioplankton abundance, production, and specific growth rate in Chesapeake Bay. Limnol. Oceanogr. 36:1243-1258. (Pubitemid 2148356)
17. Strickland, J.D.H., and T.R. Parsons. 1972. A practical handbook of seawater analysis, Fisheries Research Board of Canada, Ottawa.
18. Strom, S.L. 2000. Bacterivory: Interactions between bacteria and their grazers, p. 351-386. In D.L. Kirchman (ed.), Microbial Ecology of the Oceans. Wiley-Liss, New York, NY.
19. Suzuki, R., and T. Ishimaru. 1990. An improved method for the determination of phytoplankton chlorophyll using N, N-dimethylforma- mide. J. Oceanogr. 46:190-194.
20. Thingstad, T.F. 2000. Control of bacterial growth in idealized food webs, p. 229-260. In D.L. Kirchman (Ed), Microbial Ecology of the Oceans. Wiley-Liss, New York, NY.
21. Thioulouse, J. 1997. ADE-4: a multivariate analysis and graphical display software. Stat. Comput. 7:75-83.
22. Troussellier, M., H. Schafer, N. Batailler, L. Bernard, C. Courties, P. Lebaron, G. Muyzer, P. Servais, and J. Vives-Rego. 2002. Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France). Aquat. Microb. Ecol. 28:13-24.
23. Yoshinaga, I., M.C. Kim, N. Katanozaka, I. Imai, A. Uchida, and Y. Ishida. 1998. Population structure of algicidal marine bacteria targeting the red tide forming alga Heterosigma akasiwo (Raphidophyceae), determined by restriction fragment length polymorphism analysis of the bacterial 16S ribosomal RNA genes. Mar. Ecol. Prog. Ser. 170:33-44.
24. Wieltschnig, C., A.K.T. Kitschner, A. Steits, and B. Velimirov. 2001. Weak coupling between heterotrophic nanoflagellates and bacteria in a eutrophic freshwater environment. Microb. Ecol. 42:159-167.
25. Wu, Q.L., G. Zwart, M. Schauer, M.P.K. Agterveld, and M.W. Hahn. 2006. Bacterioplankton community composition along salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China. Appl. Environ. Microbiol. 72:5478-5485.