-
1
-
-
33646894725
-
BicAT: A biclustering analysis toolbox
-
DOI 10.1093/bioinformatics/btl099
-
S. Barkow, S. Bleuler, A. Prelic, P. Zimmermann, and E. Zitzler, "BicAT: a biclustering analysis toolbox," Bioinformatics, Vol. 22, pp. 1282-1283, May 15, 2006 2006. (Pubitemid 43779026)
-
(2006)
Bioinformatics
, vol.22
, Issue.10
, pp. 1282-1283
-
-
Barkow, S.1
Bleuler, S.2
Prelic, A.3
Zimmermann, P.4
Zitzler, E.5
-
2
-
-
33646137384
-
A systematic comparison and evaluation of biclustering methods for gene expression data
-
A. Prelic, S. Bleuler, P. Zimmermann, A. Wille, P. Buhlmann, W. Gruissem, L. Hennig, L. Thiele, and E. Zitzler, "A Systematic comparison and evaluation of biclustering methods for gene expression data," Bioinformatics, Vol. 22, pp. 1122 - 1129, 2006.
-
(2006)
Bioinformatics
, vol.22
, pp. 1122-1129
-
-
Prelic, A.1
Bleuler, S.2
Zimmermann, P.3
Wille, A.4
Buhlmann, P.5
Gruissem, W.6
Hennig, L.7
Thiele, L.8
Zitzler, E.9
-
3
-
-
3142768191
-
Biclustering algorithms for biological data analysis: A survey
-
S. C. Madeira and A. L. Oliveira, "Biclustering algorithms for biological data analysis: a survey," IEEE/ACM Trans Comput Biol Bioinform, Vol. 1, pp. 24 - 45, 2004.
-
(2004)
IEEE/ACM Trans Comput Biol Bioinform
, vol.1
, pp. 24-45
-
-
Madeira, S.C.1
Oliveira, A.L.2
-
4
-
-
0242690489
-
Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem
-
DOI 10.1089/10665270360688075
-
A. Ben-Dor B. Chor, R. Karp, and Z. Yakhini, "Discovering local structure in gene expression data: the order-preserving submatrix problem," Journal of Computational Biology, Vol. 10, pp. 373 - 384, 2003. (Pubitemid 37372155)
-
(2003)
Journal of Computational Biology
, vol.10
, Issue.3-4
, pp. 373-384
-
-
Ben-Dor, A.1
Chor, B.2
Karp, R.3
Yakhini, Z.4
-
5
-
-
11244306358
-
Discovering statistically significant biclusters in gene expression data
-
A. Tanay, R. Sharan, and R. Shamir, "Discovering statistically significant biclusters in gene expression data," Bioinformatics, Vol. 18, pp.S136-144, July 1, 2002 2002. (Pubitemid 41185647)
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Tanay, A.1
Sharan, R.2
Shamir, R.3
-
6
-
-
33845864692
-
Computing the maximum similarity bi-clusters of gene expression data
-
DOI 10.1093/bioinformatics/btl560
-
X. Liu and L. Wang, "Computing the maximum similarity biclusters of gene expression data," Bioinformatics, Vol. 23, pp. 50-56, January 1, 2007 2007. (Pubitemid 46017855)
-
(2007)
Bioinformatics
, vol.23
, Issue.1
, pp. 50-56
-
-
Liu, X.1
Wang, L.2
-
7
-
-
44449136102
-
Bayesian biclustering of gene expression data
-
DOI 10.1186/1471-2164-9-S1-S4
-
J. Gu and J. Liu, "Bayesian biclustering of gene expression data," BMC Genomics, Vol. 9, p. S4, 2008. (Pubitemid 351833873)
-
(2008)
BMC Genomics
, vol.9
, Issue.SUPPL. 1
-
-
Gu, J.1
Liu, J.S.2
-
9
-
-
34548735304
-
BiVisu: Software tool for bicluster detection and visualization
-
DOI 10.1093/bioinformatics/btm338
-
K. O. Cheng, N. F. Law, W. C. Siu, and T. H. Lau, "BiVisu: software tool for bicluster detection and visualization," Bioinformatics, Vol. 23, pp. 2342 - 2344, 2007. (Pubitemid 47423876)
-
(2007)
Bioinformatics
, vol.23
, Issue.17
, pp. 2342-2344
-
-
Cheng, K.O.1
Law, N.F.2
Siu, W.C.3
Lau, T.H.4
-
10
-
-
4544339167
-
Defining transcription modules using large-scale gene expression data
-
DOI 10.1093/bioinformatics/bth166
-
J. Ihmels, S. Bergmann, and N. Barkai, "Defining transcription modules using large-scale gene expression data," Bioinformatics, Vol. 20, pp. 1993-2003, 2004. (Pubitemid 39236551)
-
(2004)
Bioinformatics
, vol.20
, Issue.13
, pp. 1993-2003
-
-
Ihmels, J.1
Bergmann, S.2
Barkai, N.3
-
11
-
-
0036699526
-
Revealing modular organization in the yeast transcriptional network
-
DOI 10.1038/ng941
-
J. Ihmels, G. Friedlander, S. Bergmann, O. Sarig, Y. Ziv, and N. Barkai, "Revealing modular organization in the yeast transcriptional network," Nature Genetics, Vol. 31, pp. 370 - 377, 2002. (Pubitemid 35154445)
-
(2002)
Nature Genetics
, vol.31
, Issue.4
, pp. 370-377
-
-
Ihmels, J.1
Friedlander, G.2
Bergmann, S.3
Sarig, O.4
Ziv, Y.5
Barkai, N.6
-
12
-
-
44349136914
-
Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization
-
DOI 10.1186/1471-2105-9-210
-
K.-O. Cheng, N.-F. Law, W.-C. Siu, and A. Liew, "Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization," BMC Bioinformatics, Vol. 9, p. 210, 2008. (Pubitemid 351729070)
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 210
-
-
Cheng, K.-O.1
Law, N.-F.2
Siu, W.-C.3
Liew, A.W.-C.4
-
13
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
M. Ashburner, C. A. Ball, J. A. Blake, D. Bolsteing, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-TarverA. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, and G. Sherlock, "Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium," Nature Genetics, Vol. 25, pp. 25 - 29, 2000.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Bolsteing, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
14
-
-
24044440971
-
BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
-
DOI 10.1093/bioinformatics/bti551
-
S. Maere, K. Heymans, and M. Kuiper, "BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks," Bioinformatics, Vol. 21, pp. 3448-3449, August 15, 2005 2005. (Pubitemid 41222459)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
15
-
-
9144257282
-
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
-
DOI 10.1093/nar/gkh894
-
A. Ruepp, A. Zollner, D. Maier, K. Albermann, J. Hani, M. Mokrejs, I. Tetko, U. Guldener, G. Mannhaupt, M. Munsterkotter, and H. W. Mewes, "The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes," Nucl. Acids Res., Vol. 32, pp. 5539-5545, October 1, 20044 2004. (Pubitemid 39545671)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.18
, pp. 5539-5545
-
-
Ruepp, A.1
Zollner, A.2
Maier, D.3
Albermann, K.4
Hani, J.5
Mokrejs, M.6
Tetko, I.7
Guldener, U.8
Mannhaupt, G.9
Munsterkotter, M.10
Mewes, H.W.11
-
16
-
-
0038522873
-
GeneMerge - Post-genomic analysis, data mining, and hypothesis testing
-
DOI 10.1093/bioinformatics/btg114
-
C. I. Castillo-Davis and D. L. Hartl, "GeneMerge - post-genomic analysis, data mining, and hypothesis testing," Bioinformatics, Vol. 19, pp. 891 - 892, 2003. (Pubitemid 36582407)
-
(2003)
Bioinformatics
, vol.19
, Issue.7
, pp. 891-892
-
-
Castillo-Davis, C.I.1
Hartl, D.L.2
-
17
-
-
0347513219
-
Characterizing gene sets with FuncAssociate
-
DOI 10.1093/bioinformatics/btg363
-
G. F. Berriz, O. D. King, B. Bryant, C. Sander, and F. P. Roth, "Characterizing gene sets with FuncAssociate," Bioinformatics, Vol. 19, pp. 2502-2504, December 12, 2003 2003. (Pubitemid 38016661)
-
(2003)
Bioinformatics
, vol.19
, Issue.18
, pp. 2502-2504
-
-
Berriz, G.F.1
King, O.D.2
Bryant, B.3
Sander, C.4
Roth, F.P.5
-
18
-
-
84869346247
-
-
http://www.nationmaster.com/encyclopedia/Saccharomycescerevisiae
-
-
-
-
19
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
December 1, 2000
-
A. P. Gasch, P. T. Spellman, C. M. Kao, O. Carmel-HarelM. B. Eisen, G. Storz, D. Botstein, and P. O. Brown, "Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes," Mol. Biol. Cell, Vol. 11, pp. 4241-4257, December 1, 2000 2000.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
20
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
DOI 10.1073/pnas.95.25.14863
-
M. B. Eisen, P. T. Spellman, P. O. Brown, and D. Botstein, "Cluster analysis and display of genome-wide expression patterns," Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, pp. 14863 - 14868, 1998. (Pubitemid 29003722)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
21
-
-
0033028596
-
Systematic determination of genetic network architecture
-
DOI 10.1038/10343
-
S. Tavazoie, J. D. Hughes, M. J. Campbell, R. J. Cho, and G. M. Church, "Systematic determination of genetic network architecture," Nature Genetics, Vol. 22, pp. 281-285, 1999. (Pubitemid 29297256)
-
(1999)
Nature Genetics
, vol.22
, Issue.3
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
22
-
-
84869368578
-
-
http://www.geneontology.org/
-
-
-
|