메뉴 건너뛰기




Volumn , Issue , 2009, Pages 163-167

An automatic gene ontology software tool for bicluster and cluster comparisons

Author keywords

[No Author keywords available]

Indexed keywords

CLUSTER METHOD; DIMENSIONALITY REDUCTION; GENE ONTOLOGY; GENE REGULATORY NETWORKS; INTEGRATED MODULE; MATLAB- SOFTWARE; MICROARRAY DATA SETS; OPEN-SOURCE; SOFTWARE TOOL;

EID: 67650403390     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CIBCB.2009.4925723     Document Type: Conference Paper
Times cited : (7)

References (22)
  • 1
    • 33646894725 scopus 로고    scopus 로고
    • BicAT: A biclustering analysis toolbox
    • DOI 10.1093/bioinformatics/btl099
    • S. Barkow, S. Bleuler, A. Prelic, P. Zimmermann, and E. Zitzler, "BicAT: a biclustering analysis toolbox," Bioinformatics, Vol. 22, pp. 1282-1283, May 15, 2006 2006. (Pubitemid 43779026)
    • (2006) Bioinformatics , vol.22 , Issue.10 , pp. 1282-1283
    • Barkow, S.1    Bleuler, S.2    Prelic, A.3    Zimmermann, P.4    Zitzler, E.5
  • 3
    • 3142768191 scopus 로고    scopus 로고
    • Biclustering algorithms for biological data analysis: A survey
    • S. C. Madeira and A. L. Oliveira, "Biclustering algorithms for biological data analysis: a survey," IEEE/ACM Trans Comput Biol Bioinform, Vol. 1, pp. 24 - 45, 2004.
    • (2004) IEEE/ACM Trans Comput Biol Bioinform , vol.1 , pp. 24-45
    • Madeira, S.C.1    Oliveira, A.L.2
  • 4
    • 0242690489 scopus 로고    scopus 로고
    • Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem
    • DOI 10.1089/10665270360688075
    • A. Ben-Dor B. Chor, R. Karp, and Z. Yakhini, "Discovering local structure in gene expression data: the order-preserving submatrix problem," Journal of Computational Biology, Vol. 10, pp. 373 - 384, 2003. (Pubitemid 37372155)
    • (2003) Journal of Computational Biology , vol.10 , Issue.3-4 , pp. 373-384
    • Ben-Dor, A.1    Chor, B.2    Karp, R.3    Yakhini, Z.4
  • 5
    • 11244306358 scopus 로고    scopus 로고
    • Discovering statistically significant biclusters in gene expression data
    • A. Tanay, R. Sharan, and R. Shamir, "Discovering statistically significant biclusters in gene expression data," Bioinformatics, Vol. 18, pp.S136-144, July 1, 2002 2002. (Pubitemid 41185647)
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Tanay, A.1    Sharan, R.2    Shamir, R.3
  • 6
    • 33845864692 scopus 로고    scopus 로고
    • Computing the maximum similarity bi-clusters of gene expression data
    • DOI 10.1093/bioinformatics/btl560
    • X. Liu and L. Wang, "Computing the maximum similarity biclusters of gene expression data," Bioinformatics, Vol. 23, pp. 50-56, January 1, 2007 2007. (Pubitemid 46017855)
    • (2007) Bioinformatics , vol.23 , Issue.1 , pp. 50-56
    • Liu, X.1    Wang, L.2
  • 7
    • 44449136102 scopus 로고    scopus 로고
    • Bayesian biclustering of gene expression data
    • DOI 10.1186/1471-2164-9-S1-S4
    • J. Gu and J. Liu, "Bayesian biclustering of gene expression data," BMC Genomics, Vol. 9, p. S4, 2008. (Pubitemid 351833873)
    • (2008) BMC Genomics , vol.9 , Issue.SUPPL. 1
    • Gu, J.1    Liu, J.S.2
  • 9
    • 34548735304 scopus 로고    scopus 로고
    • BiVisu: Software tool for bicluster detection and visualization
    • DOI 10.1093/bioinformatics/btm338
    • K. O. Cheng, N. F. Law, W. C. Siu, and T. H. Lau, "BiVisu: software tool for bicluster detection and visualization," Bioinformatics, Vol. 23, pp. 2342 - 2344, 2007. (Pubitemid 47423876)
    • (2007) Bioinformatics , vol.23 , Issue.17 , pp. 2342-2344
    • Cheng, K.O.1    Law, N.F.2    Siu, W.C.3    Lau, T.H.4
  • 10
    • 4544339167 scopus 로고    scopus 로고
    • Defining transcription modules using large-scale gene expression data
    • DOI 10.1093/bioinformatics/bth166
    • J. Ihmels, S. Bergmann, and N. Barkai, "Defining transcription modules using large-scale gene expression data," Bioinformatics, Vol. 20, pp. 1993-2003, 2004. (Pubitemid 39236551)
    • (2004) Bioinformatics , vol.20 , Issue.13 , pp. 1993-2003
    • Ihmels, J.1    Bergmann, S.2    Barkai, N.3
  • 11
    • 0036699526 scopus 로고    scopus 로고
    • Revealing modular organization in the yeast transcriptional network
    • DOI 10.1038/ng941
    • J. Ihmels, G. Friedlander, S. Bergmann, O. Sarig, Y. Ziv, and N. Barkai, "Revealing modular organization in the yeast transcriptional network," Nature Genetics, Vol. 31, pp. 370 - 377, 2002. (Pubitemid 35154445)
    • (2002) Nature Genetics , vol.31 , Issue.4 , pp. 370-377
    • Ihmels, J.1    Friedlander, G.2    Bergmann, S.3    Sarig, O.4    Ziv, Y.5    Barkai, N.6
  • 12
    • 44349136914 scopus 로고    scopus 로고
    • Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization
    • DOI 10.1186/1471-2105-9-210
    • K.-O. Cheng, N.-F. Law, W.-C. Siu, and A. Liew, "Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization," BMC Bioinformatics, Vol. 9, p. 210, 2008. (Pubitemid 351729070)
    • (2008) BMC Bioinformatics , vol.9 , pp. 210
    • Cheng, K.-O.1    Law, N.-F.2    Siu, W.-C.3    Liew, A.W.-C.4
  • 14
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
    • DOI 10.1093/bioinformatics/bti551
    • S. Maere, K. Heymans, and M. Kuiper, "BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks," Bioinformatics, Vol. 21, pp. 3448-3449, August 15, 2005 2005. (Pubitemid 41222459)
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 16
    • 0038522873 scopus 로고    scopus 로고
    • GeneMerge - Post-genomic analysis, data mining, and hypothesis testing
    • DOI 10.1093/bioinformatics/btg114
    • C. I. Castillo-Davis and D. L. Hartl, "GeneMerge - post-genomic analysis, data mining, and hypothesis testing," Bioinformatics, Vol. 19, pp. 891 - 892, 2003. (Pubitemid 36582407)
    • (2003) Bioinformatics , vol.19 , Issue.7 , pp. 891-892
    • Castillo-Davis, C.I.1    Hartl, D.L.2
  • 17
    • 0347513219 scopus 로고    scopus 로고
    • Characterizing gene sets with FuncAssociate
    • DOI 10.1093/bioinformatics/btg363
    • G. F. Berriz, O. D. King, B. Bryant, C. Sander, and F. P. Roth, "Characterizing gene sets with FuncAssociate," Bioinformatics, Vol. 19, pp. 2502-2504, December 12, 2003 2003. (Pubitemid 38016661)
    • (2003) Bioinformatics , vol.19 , Issue.18 , pp. 2502-2504
    • Berriz, G.F.1    King, O.D.2    Bryant, B.3    Sander, C.4    Roth, F.P.5
  • 18
    • 84869346247 scopus 로고    scopus 로고
    • http://www.nationmaster.com/encyclopedia/Saccharomycescerevisiae
  • 21
    • 0033028596 scopus 로고    scopus 로고
    • Systematic determination of genetic network architecture
    • DOI 10.1038/10343
    • S. Tavazoie, J. D. Hughes, M. J. Campbell, R. J. Cho, and G. M. Church, "Systematic determination of genetic network architecture," Nature Genetics, Vol. 22, pp. 281-285, 1999. (Pubitemid 29297256)
    • (1999) Nature Genetics , vol.22 , Issue.3 , pp. 281-285
    • Tavazoie, S.1    Hughes, J.D.2    Campbell, M.J.3    Cho, R.J.4    Church, G.M.5
  • 22
    • 84869368578 scopus 로고    scopus 로고
    • http://www.geneontology.org/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.