Genetic diversity of the pelagic harpacticoid copepod Macrosetella gracilis on colonies of the cyanobacterium Trichodesmium spp

Aquatic Biology

Volumn 1, Issue 1, 2007, Pages 33-43

  Eberl, Renate ^a,b   Cohen, Sarah ^a   Cipriano, Frank ^a   Carpenter, Edward J ^a  

^a SAN FRANCISCO STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

COI; Cytochrome c oxidase subunit i; Genetic diversity; Harpacticoidea; Holopelagic life history; Macrosetella; Pelagic copepod; Rafting; Trichodesmium

Indexed keywords

COPEPODA; HARPACTICOIDA; MACROSETELLA; MACROSETELLA GRACILIS; TRICHODESMIUM;

EID: 67650369313     PISSN: 18647782     EISSN: 18647790     Source Type: Journal    
DOI: 10.3354/ab00002     Document Type: Article

References (44)

1. Avise JC (2000) Phylogeography. Harvard University Press, London
2. Beerli P, Felsenstein J (2001) Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc Natl Acad Sci USA 98:4563-4568
3. Björnberg TKS (1964) Observations on the development and the biology of the Miraciidae Dana (Copepoda: Crustacea). Bull Mar Sci 15:512-520
4. Böttger-Schnack R, Schnack D (1989) Vertical distribution and population structure of Macrosetella gracilis (Copepoda: Harpacticoida) in the Red Sea in relation to the occurrence of Oscillatoria (Trichodesmium) spp. (Cyanobacteria). Mar Ecol Prog Ser 52:27-31
5. Briggs JC (1999) Coincident biogeographic patterns: Indo- West Pacific Ocean. Evolution 53:326-335.
6. Bucklin A, Kaartvedt S, Guarnieri M, Goswami U (2000) Population genetics of drifting (Calanus spp.) and resident (Arcatia clausi) plankton in Norwegian fjords. J Plankton Res 22:1237-1251
7. Bucklin A, Frost BW, Bradford-Grieve J, Allen LD, Copley NJ (2003) Molecular systematic and phylogentic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae. Mar Biol 142:333-343
8. Capone DG, Zehr JP, Paerl HW, Bergman B, Carpenter EJ (1997) Trichodesmium, a globally significant marine cyanobacterium. Science 276:1221-1230
9. Carlton JT, Geller JB (1993) Ecological roulette: the global transport of nonindigenous marine organisms. Science 261:78-82
10. Choi K, Kimmerer W, Smith G, Ruiz GM, Lion K (2005) Postexchange zooplankton in ballast water of ships entering the San Fransisco Estuary. J Plankton Res 27:707-714.
11. Cox PA, Banack SA, Murch SJ, Rasmussen U and 6 others (2005) Diverse taxa of cyanobacteria produce β-N-methylamino- L-alanine, a neurotoxic aminoacid. Proc Natl Acad Sci USA 102:5074-5078
12. Eberl R, Carpenter EJ (2007) Association of the copepod Macrosetella gracilis with the cyanobacterium Trichodesmium spp. in the North Pacific Gyre. Mar Ecol Prog Ser 333:205-212
13. Edmands S (2001) Phylogeography of the intertidal copepod Tigriopus californicus reveals substantially reduced population differentiation at northern latitudes. Mol Ecol 10: 1743-1750
14. Excoffier L, Smouse P, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: applications to human mitochondrial DNA restriction data. Genetics 131:479-491
15. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 3:294-299
16. Goetze E (2003) Cryptic speciation on the high seas; global phylogenetics of the copepod family Eucalanidae. Proc R Soc Lond B 270:2321-2331
17. Goetze E (2005) Global population genetic structure and biogeography of the oceanic copepods Eucalanus hyalinus and E. spinifer. Evolution 59(11):2378-2398
18. Grosberg R, Cunningham CW (2001) Genetic structure in the sea from populations to communities. In: Bertram MD, Gaines SD, Hey ME (eds) Marine community ecology. Sinauer Associates, Sunderland, MA
19. Hillis DME, Moritz CE, Mable BKE (1996) Molecular systematics, 2nd edn. Sinauer Associates, Sunderland, MA.
20. Huys R, Böttger-Schnack R (1994) Taxonomy, biology and phylogeny of Miracidae (Copepoda: Harpacticoida). Sarsia 79:207-283
21. Huys R, Boxshall GA (1991) Copepod evolution. Ray Society, London.
22. Hwang J, Turner J (1995) Behaviour of cyclopoid, harpacticoid and calanoid copepods from coastal waters of Taiwan. PSZN I: Mar Ecol 16:207-216
23. Jensen JL, Bohonak AJ, Kelly ST (2005) Software isolation by distance, web service. BMC Genet 6:13. Published online March 11, 2005. doi: 10.1186/1471-2156-6-13
24. Knowlton N (1993) Sibling species in the sea. Annu Rev Ecol Syst 24:189-216
25. Kuhner MK (2003) LAMARC: estimating population genetic parameters from molecular data. In: Salemi M, Vandamme AM (eds) The phylogenetic handbook: a practical approach to DNA and protein phylogeny. Cambridge University Press, Cambridge, p 378-398
26. Lee CE (2000) Global phylogeography of a cryptic copepod species complex and reproductive isolation between genetically proximate 'populations'. Evolution 54:2014-2027
27. Marcotte BM (1984) Behaviorally defined ecological resources and speciation in Tisbe (Copepoda: Harpacticoida). J Crustac Biol 4(3):404-416
28. Michaels C (1997) Latitude/longitude distance calculation. Avalable at: http://jan.ucc.nau.edu/~cvm/latlongdist.html
29. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
30. Nielsen R, Wakeley J (2001) Distinguishing migration from isolation: a Markov Chain Monte Carlo approach. Genetics 158:885-896
31. O'Neil JM (1998) The colonial cyanobacterium Trichodesmium as a physical and nutritional substrate for the harpacticoid copepod Macrosetella gracilis. J Plankton Res 20:43-59
32. O'Neil JM, Metzeler P, Gilbert PM (1996) Ingestion of 15N2- labelled Trichodesmium, and ammonium regeneration by the pelagic harpacticoid copepod Macrosetella gracilis. Mar Biol 125:89-96
33. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
34. Rocha-Olivares A, Fleeger JW, Foltz W (2001) Decoupling of molecular and morphological evolution in deep lineages of a meiobenthic harpacticoid copepod. Mol Biol Evol 18: 1088-1102
35. Rozas J, Sachez-del Barrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497
36. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN. A software for population genetic analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva.
37. Sheridan CC, Steinberg DK, Kling GW (2002) The microbial and metazoan community associated with colonies of Trichodesmium spp.: a quantitative survey. J Plankton Res 24:913-922
38. Sokal RR, Rohlf FJ (1995) Biometry. WH Freeman, New York.
39. Swofford DL (2000) PAUP *: phylogenetic analysis using parsimony and other methods. Sinauer Associates, Sunderland, MA
40. Swofford DL, Sullivan J (2003) Phylogeny inference based on parsimony and other methods. In: Salemi M, Vandamme AM (eds) The phylogenetic handbook. Cambridge University Press, Cambridge, p 160-206
41. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
42. Thiel M, Gutow L (2005a) The ecology of rafting in the marine environment. I. The floating substrata. In: Gibbson RN, Atkinson RJA, Gordon JDM (eds) Oceanography and marine biology: an annual review, Vol 42. Aberdeen University Press, Aberdeen, p 181-263
43. Thiel M, Gutow L (2005b) The ecology of rafting in the marine environment. II. The rafting organisms and community. In: Gibbson RN, Atkinson RJA, Gordon JDM (eds) Oceanography and marine biology: an annual review, Vol 43.Aberdeen University Press, Aberdeen, p 279-418.
44. Weir BS, Cockerham CC (1984) Estimating F statistics for the analysis of population structure. Evolution 38:1358-1370.