메뉴 건너뛰기




Volumn 31, Issue 2, 2009, Pages 129-142

Molecular cloning and characterization of two brassica napus ttg1 genes reveal genus-specific nucleotide preference, Extreme protein-level conservation and fast divergence of organ-specificity

Author keywords

Alternative actions; Brassica napus L.; Nucleotide preference; Organ specificity; Ortholog; TRANSPARENT TESTA GLABRA1 (TTGl)

Indexed keywords

BRASSICA NAPUS;

EID: 67650104344     PISSN: 19769571     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF03191146     Document Type: Article
Times cited : (8)

References (31)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Altschul SF, Madden TL. Schaffer AA, Zhang J, Zhang Z, Miller W and Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
    • Altschul SF, Madden TL. Schaffer AA, Zhang J, Zhang Z, Miller W and Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
  • 2
    • 2942564430 scopus 로고    scopus 로고
    • Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
    • Blom N, Sicheritz-Ponten T, Gupta R, Gammeltoft S and Brunak S (2004) Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics 41633-1649.
    • (2004) Proteomics , vol.4 , pp. 1633-1649
    • Blom, N.1    Sicheritz-Ponten, T.2    Gupta, R.3    Gammeltoft, S.4    Brunak, S.5
  • 3
    • 18044379413 scopus 로고    scopus 로고
    • Transcriptional control of flavonoid biosynthesis: A complex network of conserved regulators involved in multiple aspects of differentiation in Arabidopsis
    • Broun P (2005) Transcriptional control of flavonoid biosynthesis: a complex network of conserved regulators involved in multiple aspects of differentiation in Arabidopsis. Curr. Opin. Plant Biol. 8: 272-279.
    • (2005) Curr. Opin. Plant Biol , vol.8 , pp. 272-279
    • Broun, P.1
  • 4
    • 51249186914 scopus 로고
    • A plant DNA minipreparation
    • version II. Plant Mol. Biol. Reptr. l
    • Dellaporta SL, Wood J and Hicks JB (1983) A plant DNA minipreparation: version II. Plant Mol. Biol. Reptr. l: 19-21.
    • (1983) , pp. 19-21
    • Dellaporta, S.L.1    Wood, J.2    Hicks, J.B.3
  • 5
    • 0031010722 scopus 로고    scopus 로고
    • The anil locus controlling flower pigmentation in petunia encodes a novel WD-repeat protein conserved in yeast, plants, and animals
    • de Vetten N, Quattrocchio F, Mol J and Koes R (1997) The anil locus controlling flower pigmentation in petunia encodes a novel WD-repeat protein conserved in yeast, plants, and animals. Genes Dev. 11: 1422- 1434.
    • (1997) Genes Dev , vol.11 , pp. 1422-1434
    • de Vetten, N.1    Quattrocchio, F.2    Mol, J.3    Koes, R.4
  • 6
    • 0028582006 scopus 로고
    • The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root
    • Galway M, Masucci J, Lloyd A, Walbot V, Davis R and Schiefelbein J (1994) The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root. Dev. Biol. 166: 740-754.
    • (1994) Dev. Biol , vol.166 , pp. 740-754
    • Galway, M.1    Masucci, J.2    Lloyd, A.3    Walbot, V.4    Davis, R.5    Schiefelbein, J.6
  • 7
    • 0029595442 scopus 로고
    • SOPMA Significantimprovement in protein secondary structure prediction by consensus prediction from multiple alignments
    • Geourjon C and Deleage G (1995) SOPMA Significantimprovement in protein secondary structure prediction by consensus prediction from multiple alignments. Comput. Appl. Biosci. 11: 681-684.
    • (1995) Comput. Appl. Biosci , vol.11 , pp. 681-684
    • Geourjon, C.1    Deleage, G.2
  • 8
    • 0034873151 scopus 로고    scopus 로고
    • Maternal and embryonal control of seed colour by different Brassica alboglabra chromosomes
    • Heneen WK and Brismar K (2001) Maternal and embryonal control of seed colour by different Brassica alboglabra chromosomes. Plant Breed. 120: 325-329.
    • (2001) Plant Breed , vol.120 , pp. 325-329
    • Heneen, W.K.1    Brismar, K.2
  • 9
    • 17844371725 scopus 로고    scopus 로고
    • Two WD-repeat genes from cotton are functional homologues of the Arabidopsis thaliana TRANSPARENT TESTA GLABRA 1 (TTGl) gene
    • Humphries JA, Walker AR, Timmis JN and Orford SJ (2004) Two WD-repeat genes from cotton are functional homologues of the Arabidopsis thaliana TRANSPARENT TESTA GLABRA 1 (TTGl) gene. Plant Mol. Biol. 57: 67-81.
    • (2004) Plant Mol. Biol , vol.57 , pp. 67-81
    • Humphries, J.A.1    Walker, A.R.2    Timmis, J.N.3    Orford, S.J.4
  • 10
    • 0034778714 scopus 로고    scopus 로고
    • Isolation of high quality RNA from bilberry (Vaccinium myrtillus L.) fruit
    • Jaakola L, Pirttilä AM, Halonen M and Hohtola A (2001) Isolation of high quality RNA from bilberry (Vaccinium myrtillus L.) fruit. Mol. Biotechnol. 19: 201-203.
    • (2001) Mol. Biotechnol , vol.19 , pp. 201-203
    • Jaakola, L.1    Pirttilä, A.M.2    Halonen, M.3    Hohtola, A.4
  • 11
    • 0034981103 scopus 로고    scopus 로고
    • Developmentally distinct MYB genes encode functionally equivalent proteins in Arabidopsis
    • Lee MM and Schiefelbein J (2001) Developmentally distinct MYB genes encode functionally equivalent proteins in Arabidopsis. Development 128: 1539- 1546.
    • (2001) Development , vol.128 , pp. 1539-1546
    • Lee, M.M.1    Schiefelbein, J.2
  • 12
    • 13144251179 scopus 로고    scopus 로고
    • Plant conserved non- coding sequences and paralogue evolution
    • Lockton S and Gaut BS (2005) Plant conserved non- coding sequences and paralogue evolution. Trends Genet. 21: 60-65.
    • (2005) Trends Genet , vol.21 , pp. 60-65
    • Lockton, S.1    Gaut, B.S.2
  • 14
    • 17844379449 scopus 로고    scopus 로고
    • Chromosome triplication found across the tribe Brassiceae
    • Lysak MA, Koch MA, Pecinka A and Schubert I (2005) Chromosome triplication found across the tribe Brassiceae. Genome Res. 15: 516-525.
    • (2005) Genome Res , vol.15 , pp. 516-525
    • Lysak, M.A.1    Koch, M.A.2    Pecinka, A.3    Schubert, I.4
  • 15
    • 3242887157 scopus 로고    scopus 로고
    • CD-Search: Protein domain annotations on the fly
    • Marchler-Bauer A and Bryant SH (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 32: W327-331.
    • (2004) Nucleic Acids Res , vol.32
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 16
    • 33646231532 scopus 로고    scopus 로고
    • Isolation of cDNAs for R2R3-MYB, bHLH, and WDR transcriptional regulators and identification of c and ca mutations conferring white flowers in the Japanese morning glory
    • Morita Y, Saitoh M, Hoshino A, Nitasaka E and lida S (2006) Isolation of cDNAs for R2R3-MYB, bHLH, and WDR transcriptional regulators and identification of c and ca mutations conferring white flowers in the Japanese morning glory. Plant Cell Physiol. 4: 457-470.
    • (2006) Plant Cell Physiol , vol.4 , pp. 457-470
    • Morita, Y.1    Saitoh, M.2    Hoshino, A.3    Nitasaka, E.4    lida, S.5
  • 17
    • 33746486191 scopus 로고    scopus 로고
    • A zebrafish screen for craniofacial mutants identifies wdr68 as a highly conserved gene required for endothelin-1 expression
    • Nissen RM, Amsterdam A and Hopkins N (2006) A zebrafish screen for craniofacial mutants identifies wdr68 as a highly conserved gene required for endothelin-1 expression. BMC Dev. Biol. 6: 28.
    • (2006) BMC Dev. Biol , vol.6 , pp. 28
    • Nissen, R.M.1    Amsterdam, A.2    Hopkins, N.3
  • 18
    • 0035694290 scopus 로고    scopus 로고
    • Development of yellow-seeded Brassica napus of double low quality
    • Rahman MH, Joersbo M and Poulsen MH (2001) Development of yellow-seeded Brassica napus of double low quality. Plant Breed. 120: 473-478.
    • (2001) Plant Breed , vol.120 , pp. 473-478
    • Rahman, M.H.1    Joersbo, M.2    Poulsen, M.H.3
  • 19
    • 13744253144 scopus 로고    scopus 로고
    • MYB-bHLH-WD40 protein complex and the evolution of cellular diversity
    • Ramsay NA and Glover BJ (2005) MYB-bHLH-WD40 protein complex and the evolution of cellular diversity. Trends Plant Sci. 10: 63-70.
    • (2005) Trends Plant Sci , vol.10 , pp. 63-70
    • Ramsay, N.A.1    Glover, B.J.2
  • 22
    • 0036790390 scopus 로고    scopus 로고
    • A WD-repeat-containing putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens
    • Sompornpailin K, Makita Y, Yamazaki M and Saito K (2002) A WD-repeat-containing putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens. Plant Mol. Biol. 50: 485-495.
    • (2002) Plant Mol. Biol , vol.50 , pp. 485-495
    • Sompornpailin, K.1    Makita, Y.2    Yamazaki, M.3    Saito, K.4
  • 23
    • 0037899020 scopus 로고    scopus 로고
    • Recent advances in the biosynthesis and accumulation of anthocyanins
    • Springob K, Nakajima J, Yamazaki M and Saito K (2003) Recent advances in the biosynthesis and accumulation of anthocyanins. Nat. Prod. Rep. 20: 288-303.
    • (2003) Nat. Prod. Rep , vol.20 , pp. 288-303
    • Springob, K.1    Nakajima, J.2    Yamazaki, M.3    Saito, K.4
  • 25
    • 9144272787 scopus 로고    scopus 로고
    • The WD-repeat protein superfamily in Arabidopsis- conservation and divergence in structure and function
    • van Nocker S and Ludwig P (2003) The WD-repeat protein superfamily in Arabidopsis- conservation and divergence in structure and function. BMC Genomics A'- 50.
    • (2003) BMC Genomics A , vol.50
    • van Nocker, S.1    Ludwig, P.2
  • 26
    • 0033165574 scopus 로고    scopus 로고
    • The TRANSPARENT TESTA GLABRA 1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein
    • Walker A, Davison P, Bolognesi-Winfield A, James C, Srinivasan N, Blundell T, Esch J, Marks M and Gray J (1999) The TRANSPARENT TESTA GLABRA 1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein. Plant Cell 11: 1337-1350.
    • (1999) Plant Cell , vol.11 , pp. 1337-1350
    • Walker, A.1    Davison, P.2    Bolognesi-Winfield, A.3    James, C.4    Srinivasan, N.5    Blundell, T.6    Esch, J.7    Marks, M.8    Gray, J.9
  • 27
    • 34247608391 scopus 로고    scopus 로고
    • Molecular cloning of Brassica napus TRANSPARENT TESTA 2 gene family encoding potential MYB regulatory proteins of proanthocyanidin biosynthesis
    • Wei Y-L, Li J-N, Lu J, Tang Z-l- Pu D-C and Chai Y-R (2007) Molecular cloning of Brassica napus TRANSPARENT TESTA 2 gene family encoding potential MYB regulatory proteins of proanthocyanidin biosynthesis. Mol. Biol. Rep. 34: 105-120.
    • (2007) Mol. Biol. Rep , vol.34 , pp. 105-120
    • Wei, Y.-L.1    Li, J.-N.2    Lu, J.3    Tang, Z.-L.4    Pu, D.-C.5    Chai, Y.-R.6
  • 28
    • 0034979805 scopus 로고    scopus 로고
    • Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology
    • Winkel-Shirley B (2001) Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol. 126: 485- 493.
    • (2001) Plant Physiol , vol.126 , pp. 485-493
    • Winkel-Shirley, B.1
  • 29
    • 0032759071 scopus 로고    scopus 로고
    • Directional substitution and evolution of nucleotide content in the cytochrome oxidase II gene in earwigs (dermapteran insects)
    • Wirth T, Guellec RL and Veuille M (1999) Directional substitution and evolution of nucleotide content in the cytochrome oxidase II gene in earwigs (dermapteran insects). Mol. Biol. Evol. 16: 1645-1653.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1645-1653
    • Wirth, T.1    Guellec, R.L.2    Veuille, M.3
  • 30
    • 33846644531 scopus 로고    scopus 로고
    • Cloning and molecular characterization of a functional flavonoid 3'-hydroxylase gene from Brassica napus
    • Xu B-B, Li J-N, Zhang X-K, Wang R, Xie L-L and Chai Y-R (2007) Cloning and molecular characterization of a functional flavonoid 3'-hydroxylase gene from Brassica napus. J. Plant Physiol. 164: 350-363.
    • (2007) J. Plant Physiol , vol.164 , pp. 350-363
    • Xu, B.-B.1    Li, J.-N.2    Zhang, X.-K.3    Wang, R.4    Xie, L.-L.5    Chai, Y.-R.6
  • 31
    • 33745487720 scopus 로고    scopus 로고
    • Yang TJ, Kim JS, Kwon SJ, Lim KB, Choi BS, Kim JA,Jin M, Park JY, Lim MH, Kim HI, Urn YP, Kang JJ. Hong JH, Kim CB, Bhak J, Bancroft I and Park BS (2006) Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa. Plant Cell 18: 1339-1347.
    • Yang TJ, Kim JS, Kwon SJ, Lim KB, Choi BS, Kim JA,Jin M, Park JY, Lim MH, Kim HI, Urn YP, Kang JJ. Hong JH, Kim CB, Bhak J, Bancroft I and Park BS (2006) Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa. Plant Cell 18: 1339-1347.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.