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Volumn 49, Issue 6, 2009, Pages 1590-1601

Consensus superiority of the pharmacophore-based alignment, over maximum common substructure (MCS): 3D-QSAR studies on carbamates as acetylcholinesterase inhibitors

Author keywords

[No Author keywords available]

Indexed keywords

3D MODELING; ALIGNMENT; ENZYME INHIBITION; HYDROPHOBICITY; MOLECULAR GRAPHICS; ORGANIC COMPOUNDS; PHARMACODYNAMICS;

EID: 67650094013     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci900049e     Document Type: Article
Times cited : (57)

References (41)
  • 1
    • 0029109390 scopus 로고
    • Clinical assessment of memory disorders in amnesia and dementia
    • Butters, N.; Delis, D. C.; Lucas, J. A. Clinical assessment of memory disorders in amnesia and dementia. Annu. Rev. Psychol. 1995, 46, 493-523.
    • (1995) Annu. Rev. Psychol , vol.46 , pp. 493-523
    • Butters, N.1    Delis, D.C.2    Lucas, J.A.3
  • 2
    • 35848962080 scopus 로고    scopus 로고
    • Disease-modifying therapies for Alzheimer disease: Challenges to early intervention
    • (a) Cummings, J. L.; Doody, R.; Clark, C. Disease-modifying therapies for Alzheimer disease: challenges to early intervention. Neurology 2007, 69, 1622-1634.
    • (2007) Neurology , vol.69 , pp. 1622-1634
    • Cummings, J.L.1    Doody, R.2    Clark, C.3
  • 3
    • 0037375876 scopus 로고    scopus 로고
    • Cholinesterases: New roles in brain function and in Alzheimer's disease
    • (b) Giacobini, E. Cholinesterases: new roles in brain function and in Alzheimer's disease. Neurochem. Res. 2003, 28, 515-522.
    • (2003) Neurochem. Res , vol.28 , pp. 515-522
    • Giacobini, E.1
  • 4
    • 0042433479 scopus 로고    scopus 로고
    • The cholinergic hypothesis of age and Alzheimer's disease-related cognitive deficits: Recent challenges and their implications for novel drug development
    • (c) Terry, A. V.; Buccafusco, J. J. The cholinergic hypothesis of age and Alzheimer's disease-related cognitive deficits: recent challenges and their implications for novel drug development. J. Pharmacol. Exp. Ther. 2003, 306, 821-827.
    • (2003) J. Pharmacol. Exp. Ther , vol.306 , pp. 821-827
    • Terry, A.V.1    Buccafusco, J.J.2
  • 6
    • 37349122146 scopus 로고    scopus 로고
    • Multi-Target-Directed Drug Design Strategy: From a Dual Binding Site Acetylcholinesterase Inhibitor to a Trifunctional Compound against Alzheimer's Disease
    • (b) Bolognesi, M. L.; Cavalli, A.; Valgimigli, L.; Bartolini, M.; Rosini, M.; Andrisano, V.; Recanatini, M.; Melchiorre, C. Multi-Target-Directed Drug Design Strategy: From a Dual Binding Site Acetylcholinesterase Inhibitor to a Trifunctional Compound against Alzheimer's Disease. J. Med. Chem. 2007, 50, 6446-6449.
    • (2007) J. Med. Chem , vol.50 , pp. 6446-6449
    • Bolognesi, M.L.1    Cavalli, A.2    Valgimigli, L.3    Bartolini, M.4    Rosini, M.5    Andrisano, V.6    Recanatini, M.7    Melchiorre, C.8
  • 7
    • 0037135111 scopus 로고    scopus 로고
    • The amyloid hypothesis of Alzheimer's disease: Progress and problems on the road to therapeutics
    • (c) Hardy, J.; Selkoe, D. J. The amyloid hypothesis of Alzheimer's disease: progress and problems on the road to therapeutics. Science 2002, 297, 353-356.
    • (2002) Science , vol.297 , pp. 353-356
    • Hardy, J.1    Selkoe, D.J.2
  • 8
    • 0022493194 scopus 로고
    • Fractional diffusion-limited component of reactions catalyzed by acetylcholinesterase
    • Bazelyansky, M.; Robey, E.; Kirsch, J. F. Fractional diffusion-limited component of reactions catalyzed by acetylcholinesterase. Biochemistry 1986, 25, 125-130.
    • (1986) Biochemistry , vol.25 , pp. 125-130
    • Bazelyansky, M.1    Robey, E.2    Kirsch, J.F.3
  • 9
    • 52049121052 scopus 로고    scopus 로고
    • An investigation of structurally diverse carbamates for acetylcholinesterase (AChE) inhibition using 3D-QSAR analysis
    • Roy, K. K.; Dixit, A.; Saxena, A. K. An investigation of structurally diverse carbamates for acetylcholinesterase (AChE) inhibition using 3D-QSAR analysis. J. Mol. Graphics Modell. 2008, 27, 197-208.
    • (2008) J. Mol. Graphics Modell , vol.27 , pp. 197-208
    • Roy, K.K.1    Dixit, A.2    Saxena, A.K.3
  • 10
    • 0037130594 scopus 로고    scopus 로고
    • Rivastigmine antagonizes deficits in prepulse inhibition induced by selective immunolesioning of cholinergic neurons in nucleus basalis magnocellularis
    • Ballmaier, M.; Casamenti, F.; Scali, C.; Mazzoncini, R.; Zoli, M. Rivastigmine antagonizes deficits in prepulse inhibition induced by selective immunolesioning of cholinergic neurons in nucleus basalis magnocellularis. Neuroscience 2002, 114, 91-98.
    • (2002) Neuroscience , vol.114 , pp. 91-98
    • Ballmaier, M.1    Casamenti, F.2    Scali, C.3    Mazzoncini, R.4    Zoli, M.5
  • 11
    • 0034718202 scopus 로고    scopus 로고
    • Chronic treatment of old rats with donepezil or galantamine: Effects on memory, hippocampal plasticity and nicotinic receptors
    • Barnes, C. A.; Meltzer, J.; Houston, F.; Orr, G.; McGann, K. Chronic treatment of old rats with donepezil or galantamine: Effects on memory, hippocampal plasticity and nicotinic receptors. Neuroscience 2000, 99, 17-23.
    • (2000) Neuroscience , vol.99 , pp. 17-23
    • Barnes, C.A.1    Meltzer, J.2    Houston, F.3    Orr, G.4    McGann, K.5
  • 12
    • 16844369849 scopus 로고    scopus 로고
    • Symptomatic effect of donepezil, rivastigmine, galantamine and memantine on cognitive deficits in the APP23 model
    • Van Dam, D.; Abramowski, D.; Staufenbiel, M.; De Deyn, P. P. Symptomatic effect of donepezil, rivastigmine, galantamine and memantine on cognitive deficits in the APP23 model. Psychopharmacology 2005, 180, 177-190.
    • (2005) Psychopharmacology , vol.180 , pp. 177-190
    • Van Dam, D.1    Abramowski, D.2    Staufenbiel, M.3    De Deyn, P.P.4
  • 13
    • 18544403400 scopus 로고    scopus 로고
    • Clinical and cost-effectiveness of donepezil, rivastigmine and galantamine for Alzheimer's disease: A rapid and systematic Review
    • Clegg, A.; Bryant, J.; Nicholson, T.; McIntyre, L.; De Broe, S.; Gerard, K.; Waugh, N. Clinical and cost-effectiveness of donepezil, rivastigmine and galantamine for Alzheimer's disease: A rapid and systematic Review. Health Technol. Assess. 2001, 5, 1-137.
    • (2001) Health Technol. Assess , vol.5 , pp. 1-137
    • Clegg, A.1    Bryant, J.2    Nicholson, T.3    McIntyre, L.4    De Broe, S.5    Gerard, K.6    Waugh, N.7
  • 15
    • 9144236241 scopus 로고    scopus 로고
    • Galantamine vs Donepezil in the treatment of Alzheimer's disease
    • Goldlist, B.; Gordon, M.; Naglie, G. Galantamine vs Donepezil in the treatment of Alzheimer's disease. Drugs Aging 2003, 20, 1139-1140.
    • (2003) Drugs Aging , vol.20 , pp. 1139-1140
    • Goldlist, B.1    Gordon, M.2    Naglie, G.3
  • 16
    • 3042857513 scopus 로고    scopus 로고
    • Review of donepezil: Ageing and health Issues in Intellectual Disabilities
    • Prasher, V. P. Review of donepezil: Ageing and health Issues in Intellectual Disabilities. Int. J. Geriatr. Psychiatry 2004, 19, 509-515.
    • (2004) Int. J. Geriatr. Psychiatry , vol.19 , pp. 509-515
    • Prasher, V.P.1
  • 17
    • 0025778840 scopus 로고    scopus 로고
    • Sussman, J. L.; Harel, M.; Frolow, F.; Oefner, C.; Goldman, A.; L, L. T.; Silman, I. Atomic structure of acetylcholinesterase from Torpedo californica: a prototypic acetylcholine-binding protein. Science 1991, 253, 872-879.
    • Sussman, J. L.; Harel, M.; Frolow, F.; Oefner, C.; Goldman, A.; L, L. T.; Silman, I. Atomic structure of acetylcholinesterase from Torpedo californica: a prototypic acetylcholine-binding protein. Science 1991, 253, 872-879.
  • 18
    • 0027217179 scopus 로고
    • Dissection of the human acetylcholinesterase active center determinants of substrate specificity. Identification of residues constituting the anionic site, the hydrophobic site, and the acyl pocket
    • Ordentlich, A.; Barak, D.; Kronman, C.; Flashner, Y.; Leitner, M.; Segall, Y.; Ariel, N.; Cohen, S.; Velan, B.; Shafferman, A. Dissection of the human acetylcholinesterase active center determinants of substrate specificity. Identification of residues constituting the anionic site, the hydrophobic site, and the acyl pocket. J. Biol. Chem. 1993, 268, 17083-17095.
    • (1993) J. Biol. Chem , vol.268 , pp. 17083-17095
    • Ordentlich, A.1    Barak, D.2    Kronman, C.3    Flashner, Y.4    Leitner, M.5    Segall, Y.6    Ariel, N.7    Cohen, S.8    Velan, B.9    Shafferman, A.10
  • 19
    • 0026794595 scopus 로고
    • Expression of recombinant acetylcholinesterase in a baculovirus system: Kinetic properties of glutamate 199 mutants
    • Radic, Z.; Gibney, G.; Kawamoto, S.; MacPhee-Quigley, K.; Bongiorno, C.; Taylor, P. Expression of recombinant acetylcholinesterase in a baculovirus system: kinetic properties of glutamate 199 mutants. Biochemistry 1992, 31, 9760-9767.
    • (1992) Biochemistry , vol.31 , pp. 9760-9767
    • Radic, Z.1    Gibney, G.2    Kawamoto, S.3    MacPhee-Quigley, K.4    Bongiorno, C.5    Taylor, P.6
  • 20
    • 13844311049 scopus 로고    scopus 로고
    • CoMFA and Docking Studies on Glycogen Phosphorylase a Inhibitors as Antidiabetic Agents
    • Prathipati, P.; Pandey, G.; Saxena, A. K. CoMFA and Docking Studies on Glycogen Phosphorylase a Inhibitors as Antidiabetic Agents. J. Chem. Inf. Model. 2005, 45, 136-145.
    • (2005) J. Chem. Inf. Model , vol.45 , pp. 136-145
    • Prathipati, P.1    Pandey, G.2    Saxena, A.K.3
  • 21
    • 0000261607 scopus 로고    scopus 로고
    • Structure-based alignment and comparative molecular field analysis of acetylcholinesterase inhibitors
    • Cho, S. J.; Garsia, M. L.; Bier, J.; Tropsha, A. Structure-based alignment and comparative molecular field analysis of acetylcholinesterase inhibitors. J. Med. Chem. 1996, 39, 5064-5071.
    • (1996) J. Med. Chem , vol.39 , pp. 5064-5071
    • Cho, S.J.1    Garsia, M.L.2    Bier, J.3    Tropsha, A.4
  • 22
    • 33845735189 scopus 로고    scopus 로고
    • 3D QSAR Studies on Protein Tyrosine Phosphatase 1B Inhibitors: Comparison of the Quality and Predictivity among 3D QSAR Models Obtained from Different Conformer-Based Alignment
    • Pandey, G.; Saxena, A. K. 3D QSAR Studies on Protein Tyrosine Phosphatase 1B Inhibitors: Comparison of the Quality and Predictivity among 3D QSAR Models Obtained from Different Conformer-Based Alignment. J. Chem. Inf. Model. 2006, 46, 2579-2590.
    • (2006) J. Chem. Inf. Model , vol.46 , pp. 2579-2590
    • Pandey, G.1    Saxena, A.K.2
  • 23
    • 0027429837 scopus 로고
    • Brain selective inhibition of acetylcholinesterase: A novel approach to therapy for Alzheimer's disease
    • Enz, A.; Amstutz, R.; Boddeke, H.; Gmelin, G.; Malanowski, J. Brain selective inhibition of acetylcholinesterase: a novel approach to therapy for Alzheimer's disease. Prog. Brain Res. 1993, 98, 431-438.
    • (1993) Prog. Brain Res , vol.98 , pp. 431-438
    • Enz, A.1    Amstutz, R.2    Boddeke, H.3    Gmelin, G.4    Malanowski, J.5
  • 28
    • 0344121835 scopus 로고    scopus 로고
    • Comparison of MLR, PLS and GA-MLR in QSAR analysis
    • Prathipati, P.; Saxena, A. K. Comparison of MLR, PLS and GA-MLR in QSAR analysis. SAR QSAR Environ. Res. 2003, 14, 433-446.
    • (2003) SAR QSAR Environ. Res , vol.14 , pp. 433-446
    • Prathipati, P.1    Saxena, A.K.2
  • 29
    • 67650055456 scopus 로고    scopus 로고
    • CATALYST, release Version 4.7; Accelrys: 9685 Scranton Road, San Diego, CA 92121
    • CATALYST, release Version 4.7; Accelrys: 9685 Scranton Road, San Diego, CA 92121.
  • 30
    • 0005304561 scopus 로고
    • Kubinyi, H, Ed, ESCOM: Leiden
    • Wade, R. C. In 3D QSAR in Drug Design; Kubinyi, H., Ed.; ESCOM: Leiden, 1993; pp 486-506.
    • (1993) In 3D QSAR in Drug Design , pp. 486-506
    • Wade, R.C.1
  • 32
    • 0027944195 scopus 로고
    • Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity
    • Klebe, G.; Abraham, U.; Mietzner, T. Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity. J. Med. Chem. 1994, 37, 4130-4146.
    • (1994) J. Med. Chem , vol.37 , pp. 4130-4146
    • Klebe, G.1    Abraham, U.2    Mietzner, T.3
  • 33
    • 0033022163 scopus 로고    scopus 로고
    • Comparative Molecular Similarity Index Analysis (CoMSIA) to study hydrogen-bonding properties and to score combinatorial libraries
    • Klebe, G.; Abraham, U. Comparative Molecular Similarity Index Analysis (CoMSIA) to study hydrogen-bonding properties and to score combinatorial libraries. J. Comput.-Aided Mol. Des. 1999, 13, 1-10.
    • (1999) J. Comput.-Aided Mol. Des , vol.13 , pp. 1-10
    • Klebe, G.1    Abraham, U.2
  • 34
    • 0037920567 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa
    • Bohm, M.; Sturzebecher, J.; Klebe, G. Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa. J. Med. Chem. 1999, 42, 458-477.
    • (1999) J. Med. Chem , vol.42 , pp. 458-477
    • Bohm, M.1    Sturzebecher, J.2    Klebe, G.3
  • 35
    • 67650012697 scopus 로고    scopus 로고
    • Tripos Inc.: 1699 South Hanley Road, St. Louis, MO 63144.
    • Tripos Inc.: 1699 South Hanley Road, St. Louis, MO 63144.
  • 36
    • 84986522856 scopus 로고
    • Poling - promoting conformational variation
    • Smellie, A.; Teig, S. L.; Towbin, P. Poling - promoting conformational variation. J. Comput. Chem. 1995, 16, 171-187.
    • (1995) J. Comput. Chem , vol.16 , pp. 171-187
    • Smellie, A.1    Teig, S.L.2    Towbin, P.3
  • 37
    • 0029277503 scopus 로고
    • Analysis of conformational coverage 0.1. Validation and estimation of coverage
    • Smellie, A.; Kahn, S. D.; Teig, S. L. Analysis of conformational coverage 0.1. Validation and estimation of coverage. J. Chem. Inf. Comput. Sci. 1995, 35, 285-294.
    • (1995) J. Chem. Inf. Comput. Sci , vol.35 , pp. 285-294
    • Smellie, A.1    Kahn, S.D.2    Teig, S.L.3
  • 38
    • 0027548454 scopus 로고    scopus 로고
    • Martin, Y. C.; Bures, M. G.; Danaher, E. A.; DeLazzer, J.; Lico, I.; Pavlik, P. A. A fast new approach to pharmacophore mapping and its application to dopaminergic and benzodiazepine agonists. J. Comput.-Aided Mol. Des. 1993, 7, 83-102.
    • Martin, Y. C.; Bures, M. G.; Danaher, E. A.; DeLazzer, J.; Lico, I.; Pavlik, P. A. A fast new approach to pharmacophore mapping and its application to dopaminergic and benzodiazepine agonists. J. Comput.-Aided Mol. Des. 1993, 7, 83-102.
  • 39
    • 0023751431 scopus 로고
    • Comparative Molecular Field Analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
    • Cramer, R. D.; Patterson, D. E.; Bunce, J. D. Comparative Molecular Field Analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. J. Am. Chem. Soc. 1988, 110, 5959-5967.
    • (1988) J. Am. Chem. Soc , vol.110 , pp. 5959-5967
    • Cramer, R.D.1    Patterson, D.E.2    Bunce, J.D.3
  • 40
    • 0027762073 scopus 로고
    • Three-Dimensional QSAR of Human Immunodeficiency Virus (I) Protease Inhibitors. 1. A CoMFA Study Employing Experimentally-Determined Alignment Rules
    • Waller, C. L.; Oprea, T. I.; Giolitti, A.; Marshall, G. R. Three-Dimensional QSAR of Human Immunodeficiency Virus (I) Protease Inhibitors. 1. A CoMFA Study Employing Experimentally-Determined Alignment Rules. J. Med. Chem. 1993, 36, 4152-4160.
    • (1993) J. Med. Chem , vol.36 , pp. 4152-4160
    • Waller, C.L.1    Oprea, T.I.2    Giolitti, A.3    Marshall, G.R.4
  • 41
    • 84987100711 scopus 로고
    • Cross-validation, Bootstrapping, and Partial Least Squares Compared with Multiple Regression in Conventional QSAR Studies
    • Cramer, R. D.; Bunce, J. D.; Patterson, D. E. Cross-validation, Bootstrapping, and Partial Least Squares Compared with Multiple Regression in Conventional QSAR Studies. Quant. Struct.-Act. Relat. 1988, 7, 18-25.
    • (1988) Quant. Struct.-Act. Relat , vol.7 , pp. 18-25
    • Cramer, R.D.1    Bunce, J.D.2    Patterson, D.E.3


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