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9
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67649957235
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in preparation
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Schoepfer, J.; Chène. P.; Radimerski, T.; Meier, P.; Furet, P., in preparation.
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Schoepfer, J.1
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10
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20
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27744591551
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A X-ray crystal structure of this domain became later available: The reported modeling and design work was repeated using this crystal structure and led to the same results as those obtained with the homology model in line with the fact that, besides minor differences in the conformation of a few residue side chains, the homology model is identical to the X-ray structure
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A X-ray crystal structure of this domain became later available:. Wei H., Ruthenburg A.J., Bechis S.K., and Verdine G.L. J. Biol. Chem. 280 (2005) 37041 The reported modeling and design work was repeated using this crystal structure and led to the same results as those obtained with the homology model in line with the fact that, besides minor differences in the conformation of a few residue side chains, the homology model is identical to the X-ray structure
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J. Biol. Chem.
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Wei, H.1
Ruthenburg, A.J.2
Bechis, S.K.3
Verdine, G.L.4
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21
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67649901940
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note
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Homology modeling was performed with the program WHAT IF: Vriend, G. J. Mol. Graph. 1990, 8, 52, after sequence alignment in T-Coffe: Notredame, C.; Higgins, D. G.; Heringa, J. J. Mol. Biol. 2000, 302, 205. The DNA gyrase structure used is reported in : Brino, L.; Urzhumtsev, A.; Mousli, M.; Bronner, C.; Mitschler, A.; Oudet, P.; Moras, D. J. Biol. Chem. 2000, 275, 9468 (PDB code 1EI1). The sequence of human topoisomerase IIα was retrieved from the Swiss-Prot database (entry code P11388).
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23
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67649940110
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note
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This residue is either an asparagine or an aspartic acid in the GHKL ATPase family.
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24
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84986437005
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Modeling and docking was performed with a version of MacroModel enhanced for graphics by A. Dietrich. MacroModel:
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Modeling and docking was performed with a version of MacroModel enhanced for graphics by A. Dietrich. MacroModel:. Mohamadi F., Richards N.G.J., Guida W.C., Liskamp R., Lipton M., Caufield C., Chang G., Hendrickson T., and Still W.C. J. Comput. Chem. 11 (1990) 440
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(1990)
J. Comput. Chem.
, vol.11
, pp. 440
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Mohamadi, F.1
Richards, N.G.J.2
Guida, W.C.3
Liskamp, R.4
Lipton, M.5
Caufield, C.6
Chang, G.7
Hendrickson, T.8
Still, W.C.9
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25
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67649957371
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note
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The ATPase assay is described in Ref. 10.
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26
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0028153795
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For a review on this type of interaction see:
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For a review on this type of interaction see:. Flocco M.M., and Mowbray S.L. J. Mol. Biol. 235 (1994) 709
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(1994)
J. Mol. Biol.
, vol.235
, pp. 709
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Flocco, M.M.1
Mowbray, S.L.2
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