Molecular phylogenetics and generic assessment in the tribe Morindeae (Rubiaceae-Rubioideae): How to circumscribe Morinda L. to be monophyletic?

Molecular Phylogenetics and Evolution

Volumn 52, Issue 3, 2009, Pages 879-886

  Razafimandimbison, Sylvain G ^a   McDowell, Timothy D ^b   Halford, David A ^c   Bremer, Birgitta ^b  

^a ROYAL SWEDISH ACADEMY OF SCIENCES   (Sweden)

^b EAST TENNESSEE STATE UNIVERSITY   (United States)

^c QUEENSLAND HERBARIUM   (Australia)

Author keywords

Appunia; Coelospermum; Gynochthodes; Head inflorescences; nrETS; nrITS; Paraphyly; Phylogenetic classification; Rubiaceae; Syncarps; trnT F

Indexed keywords

CHLOROPLAST DNA; PLANT DNA; RIBOSOME DNA;

ARTICLE; BAYES THEOREM; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; FLOWER; GENETICS; MOLECULAR EVOLUTION; MORINDA; PHYLOGENY; PLANT GENOME; SEQUENCE ALIGNMENT;

BAYES THEOREM; CELL NUCLEUS; DNA, CHLOROPLAST; DNA, PLANT; DNA, RIBOSOMAL; EVOLUTION, MOLECULAR; FLOWERS; GENOME, PLANT; MORINDA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

APPUNIA; CAELOSPERMUM; CINCHONOIDEAE; GAERTNEREAE; GYNOCHTHODES; MORINDA; MORINDA ROYOC; MORINDEAE; NAUCLEEAE; RUBIACEAE; RUBIOIDEAE; SARCOPYGME; SCHRADEREAE;

EID: 67649948612     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.04.007     Document Type: Article

References (44)

1. Akaike H. Information theory as an extension of the maximum likelihood principle. In: Petrov B.N., and Csaki F. (Eds). Second International Symposium on Information Theory (1974), Akademia Kiado, Budapest 267-281
2. Alejandro G.D., Razafimandimbison S.G., and Liede-Schumann S. Polyphyly of Mussaenda inferred from ITS and trnT-F data and its implication for generic limits in Mussaendeae (Rubiaceae). Am. J. Bot. 92 (2005) 544-557
3. Andersson L. A provisional checklist of the neotropical Rubiaceae. Scripta Bot. Belg. 1 (1992) 1-199
4. Andersson L., and Rova J.H.E. The rps16 intron and the phylogeny of the Rubioideae (Rubiaceae). Plant Syst. Evol. 214 (1999) 161-186
5. Baillon H.E. Sur l'Imantina. Bull. Mens. Soc. Linn. Paris 1 (1879) 202
6. Bentham G. Flora Australiensis: A Description of the Plants of the Australian Territory 3 (1867), Reeve L & Co., London
7. Blume, C.L., 1850. Museum Botanicum, Lugduno-Batavum, Tomus 1, part 12, Brill Archive, Leiden, Netherlands, p. 179.
8. Boom, B.M., Delprete, P.G., 2002. Rubiaceae. In: Mori, S.A., Cremers, G., Gracie, C., Hoff, M., Mitchell, J.D. (Eds.), Guide to the Vascular Plants of Central French Guiana. Mem. New York Bot. Gard. 76, 606-649.
9. Borhidi A., and Diego-Pérez N. Introducción a la taxonomía de la familia Rubiaceae en la flora de México. Acta Bot. Hung. 44 (2002) 237-280
10. Bremer B., and Manen J.F. Phylogeny and classification of the subfamily Rubioideae (Rubiaceae). Plant Syst. Evol. 225 (2000) 43-72
11. Burger, W., Taylor, C.M., 1993. Family # 202 Rubiaceae. In: Burger, W. (Ed.), Flora Costaricensis. Fieldiana Bot. 33, 1-333.
12. Chase M.W., and Hills H.H. Silica gel: an ideal material for preservation of leaf samples for DNA studies. Taxon 40 (1991) 215-220
13. Darwin S.P. A synopsis of the indigenous genera of Pacific Rubiaceae. Allertonia 2 (1979) 1-44
14. Doyle J.J., and Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19 (1987) 11-15
15. Govaerts R., Andersson L., Robbrecht E., Bridson D., Davis A.P., Schanzer I., and Sonké B. World Checklist of Rubiaceae (2006), The Board of Trustees of the Royal Botanic Gardens, Kew
16. Hayden M.V., and Dwyer J.D. Seed morphology in the tribe Morindeae (Rubiaceae). Bull. Torrey Bot. Club 96 (1969) 794-810
17. Hooker, J.D., 1873. Ordo LXXXIV: Rubiaceae. In: Bentham, G., Hooker, J.D. (Eds.), Genera Plantarum 2, Lovell Reeve and Co., Williams & Northgate, London, pp. 7-151.
18. Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
19. Igersheim A., and Robbrecht E. The characters and relationships of the Prismatomerideae (Rubiaceae-Rubioideae). Comparison with Morinda and comments on the circumscription of the Morindeae s.s. Opera Bot. Belg. 6 (1993) 61-79
20. Johansson J.T. Pollen morphology of the tribe Morindeae (Rubiaceae). Grana 26 (1987) 134-150
21. Johansson J.T. Revision of the genus Caelospermum Blume (Rubiaceae, Rubioideae, Morindeae). Blumea 33 (1988) 265-297
22. Johansson J.T. The genus Morinda (Morindeae, Rubioideae, Rubiaceae) in New Caledonia: taxonomy and phylogeny. Opera Bot. 122 (1994) 1-68
23. Linnaeus C. Species Plantarum 1 (1753), L. Salvius, Holmiae
24. Lorence D.H. A nomenclator of Mexican and Central American Rubiaceae. Missouri Bot. Gard. Monogr. Ser. 73 (1999) 1-177
25. Malcomber S.T. Phylogeny of Gaertnera Lam. (Rubiaceae) based on multiple DNS markers: evidence of a rapid radiation in a widespread, morphologically diverse genus. Evolution 56 (2002) 42-57
26. Merrill E.D. An enumeration of Philippine flowering plants. Manila, Philippines Bureau of Printing 2 (1923) 492-576
27. Mueller F. Pogonolobus F. Muel. Frag. Phytogr. Aus. 1 (1858) 55
28. Nylander, J.A.A., 2001. Mrmodeltest. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala.
29. Nylander, J.A.A., 2004. MrAIC.pl. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
30. Rambaut, A., 1996. Se-Al: Sequence Alignment Editor. Available from: .
31. Razafimandimbison S.G., and Bremer B. Tribal delimitation of Naucleeae (Rubiaceae): inference from molecular and morphological data. Syst. Geogr. Plants 71 (2001) 515-538 (publ. 2002)
32. Razafimandimbison S.G., and Bremer B. Phylogeny and classification of Naucleeae (Rubiaceae) inferred from molecular (nrITS, rbcL, and trnT-F) and morphological data. Am. J. Bot. 89 (2002) 1027-1041
33. Razafimandimbison S.G., Kellogg E.A., and Bremer B. Recent origin and phylogenetic utility of divergent nrITS putative pseudogenes: a case study from Naucleeae (Rubiaceae). Syst. Biol. 53 (2004) 177-192
34. Razafimandimbison, S.G., Moog, J., Lantz, H., Maschwitz, U., Bremer, B., 2005. Re-assessment of monophyly, evolution of myrmecophytism, and rapid radiation in Neonauclea s.s. (Rubiaceae). Mol. Phylogenet. Evol. 34, 334-354.
35. Razafimandimbison S.G., Rydin C., and Bremer B. Evolution and trends in the Psychotrieae alliance (Rubiaceae)-a rarely reported evolutionary change of many-seeded carpels from one-seeded carpels. Mol. Phylogenet. Evol. 48 (2008) 207-223
36. Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
37. Saghai-Maroof K., Soliman M., Jorgensen R.A., and Allard R.W. Ribosomal DNA spacer length polymorphism in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. USA 81 (1984) 8014-8018
38. Schwartz G. Estimating the dimension of a model. Annu. Stat. 6 (1978) 461-464
39. Setchell W.A., and Christophersen E. Preliminary notes on Sarcopygme, a new rubiaceous genus from Samoa. Occ. Pap. Ber. Bishop Mus. 11 (1935) 3-5
40. Staden R. The Staden sequence analysis package. Mol. Biotechnol. 5 (1996) 233-241
41. Steyermark J.A. Tribe Morindeae. Mem. New York Bot. Gard. 17 (1967) 354
42. Steyermark, J.A., 1972. Rubiaceae. In: Maguire, B. et al. (Eds.), The Botany of Guyana Highland, vol. 9. Mem. New York Bot. Gard. 23, 227-232.
43. Taylor C., and Steyermark J.A. Rubiaceae. In: Steyermark J.A., Berry P.E., Yatskievych K., and Holst B.K. (Eds). Flora of the Venezuelan Guyana 8. Poaceae-Rubiaceae (2004), Missouri Botanical Garden Press, USA 497-848
44. Thompson A.J.D., Higgins D.G., and Gibson T.G. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Computer program. Nucleic Acids Res. 22 (1997) 4673-4680