-
1
-
-
0036193882
-
Crossing over between regions of limited homology in Escherichia coli: RecA-dependent and RecA-independent pathways
-
Lovett ST, Hurley RL, Sutera VA, Jr, Aubuchon RH, Lebedeva MA (2002) Crossing over between regions of limited homology in Escherichia coli. RecA-dependent and RecA-independent pathways. Genetics 160:851-859. (Pubitemid 34263453)
-
(2002)
Genetics
, vol.160
, Issue.3
, pp. 851-859
-
-
Lovett, S.T.1
Hurley, R.L.2
Sutera Jr., V.A.3
Aubuchon, R.H.4
Lebedeva, M.A.5
-
2
-
-
0020352445
-
Recombination between short direct repeats in a recA host
-
DOI 10.1007/BF00330053
-
Jones IM, Primrose SB, Ehrlich SD (1982) Recombination between short direct repeats in a recA host. Mol Gen Genet 188:486-489. (Pubitemid 13153796)
-
(1982)
Molecular and General Genetics
, vol.188
, Issue.3
, pp. 486-489
-
-
Jones, I.M.1
Primrose, S.B.2
Ehrlich, S.D.3
-
3
-
-
0019996193
-
On the formation of spontaneous deletions: The importance of short sequence homologies in the generation of large deletions
-
Albertini AM, Hofer M, Calos MP, Miller JH (1982) On the formation of spontaneous deletions: The importance of short sequence homologies in the generation of large deletions. Cell 29:319-328.
-
(1982)
Cell
, vol.29
, pp. 319-328
-
-
Albertini, A.M.1
Hofer, M.2
Calos, M.P.3
Miller, J.H.4
-
4
-
-
24744468387
-
Bacterial genome size reduction by experimental evolution
-
DOI 10.1073/pnas.0503654102
-
Nilsson AI, et al. (2005) Bacterial genome size reduction by experimental evolution. Proc Natl Acad Sci USA 102:12112-12116. (Pubitemid 41291137)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.34
, pp. 12112-12116
-
-
Nilsson, A.I.1
Koskiniemi, S.2
Eriksson, S.3
Kugelberg, E.4
Hinton, J.C.D.5
Andersson, D.I.6
-
5
-
-
0032570754
-
Slipped misalignment mechanisms of deletion formation: Analysis of deletion endpoints
-
DOI 10.1006/jmbi.1997.1566
-
Feschenko VV, Lovett ST (1998) Slipped misalignment mechanisms of deletion formation: Analysis of deletion endpoints. J Mol Biol 276:559-569. (Pubitemid 28116130)
-
(1998)
Journal of Molecular Biology
, vol.276
, Issue.3
, pp. 559-569
-
-
Feschenko, V.V.1
Lovett, S.T.2
-
8
-
-
0020300666
-
Analysis of spontaneous deletions and gene amplification in the lac region of Escherichia coli
-
Albertini AM, Hofer M, Calos MP, Tlsty TD, Miller JH (1983) Analysis of spontaneous deletions and gene amplification in the lac region of Escherichia coli. Cold Spring Harbor Symp Quant Biol 47:841-850.
-
(1983)
Cold Spring Harbor Symp Quant Biol
, vol.47
, pp. 841-850
-
-
Albertini, A.M.1
Hofer, M.2
Calos, M.P.3
Tlsty, T.D.4
Miller, J.H.5
-
9
-
-
0031581858
-
Short-homology-independent illegitimate recombination in Escherichia coli: Distinct mechanism from short-homology-dependent illegitimate recombination
-
DOI 10.1006/jmbi.1996.0794
-
Shimizu H, et al. (1997) Short-homology-independent illegitimate recombination in Escherichia coli: Distinct mechanism from short-homology- dependent illegitimate recombination. J Mol Biol 266:297-305. (Pubitemid 27171015)
-
(1997)
Journal of Molecular Biology
, vol.266
, Issue.2
, pp. 297-305
-
-
Shimizu, H.1
Yamaguchi, H.2
Ashizawa, Y.3
Kohno, Y.4
Asami, M.5
Kato, J.-I.6
Ikeda, H.7
-
11
-
-
0021664443
-
Mechanism of illegitimate recombination: Common sites for recombination and cleavage mediated by E. coli DNA gyrase
-
Ikeda H, Kawasaki I, Gellert M (1984) Mechanism of illegitimate recombination: Common sites for recombination and cleavage mediated by E. coli DNA gyrase. Mol Gen Genet 196:546-549.
-
(1984)
Mol Gen Genet
, vol.196
, pp. 546-549
-
-
Ikeda, H.1
Kawasaki, I.2
Gellert, M.3
-
12
-
-
4444330323
-
Illegitimate recombination mediated by double-strand break and end-joining in Escherichia coli
-
DOI 10.1016/S0065-227X(04)80031-5
-
Ikeda H, Shiraishi K, Ogata Y (2004) Illegitimate recombination mediated by double-strand break and end-joining in Escherichia coli. Adv Biophys 38:3-20. (Pubitemid 39186709)
-
(2004)
Advances in Biophysics
, vol.38
, pp. 3-20
-
-
Ikeda, H.1
Shiraishi, K.2
Ogata, Y.3
-
13
-
-
0030902447
-
Enhanced deletion formation by aberrant DNA replication in Escherichia coli
-
Saveson CJ, Lovett ST (1997) Enhanced deletion formation by aberrant DNA replication in Escherichia coli. Genetics 146:457-470. (Pubitemid 27251385)
-
(1997)
Genetics
, vol.146
, Issue.2
, pp. 457-470
-
-
Saveson, C.J.1
Lovett, S.T.2
-
14
-
-
0030660145
-
UvrD mutations enhance tandem repeat deletion in the Escherichia coli chromosome via SOS induction of the RecF recombination pathway
-
Bierne H, Seigneur M, Ehrlich SD, Michel B (1997) uvrD mutations enhance tandem repeat deletion in the Escherichia coli chromosome via SOS induction of the RecF recombination pathway. Mol Microbiol 26:557-567. (Pubitemid 27487853)
-
(1997)
Molecular Microbiology
, vol.26
, Issue.3
, pp. 557-567
-
-
Bierne, H.1
Seigneur, M.2
Ehrlich, S.D.3
Michel, B.4
-
15
-
-
0030844430
-
Isolation of a dnaE mutation which enhances RecA-independent homologous recombination in the Escherichia coli chromosome
-
Bierne H, Vilette D, Ehrlich SD, Michel B (1997) Isolation of a dnaE mutation which enhances RecA-independent homologous recombination in the Escherichia coli chromosome. Mol Microbiol 24:1225-1234. (Pubitemid 27293796)
-
(1997)
Molecular Microbiology
, vol.24
, Issue.6
, pp. 1225-1234
-
-
Bierne, H.1
Vilette, D.2
Ehrlich, S.D.3
Michel, B.4
-
16
-
-
0035107219
-
Replication mutations differentially enhance RecA-dependent and RecA-independent recombination between tandem repeats in Bacillus subtilis
-
DOI 10.1046/j.1365-2958.2001.02312.x
-
Bruand C, Bidnenko V, Ehrlich SD (2001) Replication mutations differentially enhance RecA-dependent and RecA-independent recombination between tandem repeats in Bacillus subtilis. Mol Microbiol 39:1248-1258. (Pubitemid 32225135)
-
(2001)
Molecular Microbiology
, vol.39
, Issue.5
, pp. 1248-1258
-
-
Bruand, C.1
Bidnenko, V.2
Ehrlich, S.D.3
-
17
-
-
0027420692
-
A sister-strand exchange mechanism for recA-independent deletion of repeated DNA sequences in Escherichia coli
-
Lovett ST, Drapkin PT, Sutera VA, Jr, Gluckman-Peskind TJ (1993) A sister-strand exchange mechanism for recA-independent deletion of repeated DNA sequences in Escherichia coli. Genetics 135:631-642. (Pubitemid 23324809)
-
(1993)
Genetics
, vol.135
, Issue.3
, pp. 631-642
-
-
Lovett, S.T.1
Drapkin, P.T.2
Sutera Jr., V.A.3
Gluckman-Peskind, T.J.4
-
18
-
-
0030946855
-
Deletions at stalled replication forks occur by two different pathways
-
DOI 10.1093/emboj/16.11.3332
-
Bierne H, Ehrlich SD, Michel B (1997) Deletions at stalled replication forks occur by two different pathways. EMBO J 16:3332-3340. (Pubitemid 27234970)
-
(1997)
EMBO Journal
, vol.16
, Issue.11
, pp. 3332-3340
-
-
Bierne, H.1
Ehrlich, S.D.2
Michel, B.3
-
19
-
-
0030808128
-
Double-strand breaks increase the incidence of genetic deletion associated with intermolecular recombination in bacteriophage T7
-
DOI 10.1007/s004380050498
-
Yang Y, Masker W (1997) Double-strand breaks increase the incidence of genetic deletion associated with intermolecular recombination in bacteriophage T7. Mol Gen Genet 255:277-284. (Pubitemid 27361776)
-
(1997)
Molecular and General Genetics
, vol.255
, Issue.3
, pp. 277-284
-
-
Yang, Y.1
Masker, W.2
-
20
-
-
0038401982
-
Identification of additional genes belonging to the LexA regulon in Escherichia coli
-
DOI 10.1046/j.1365-2958.2000.01826.x
-
Fernandez De Henestrosa AR, et al. (2000) Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol Microbiol 35:1560-1572. (Pubitemid 30175530)
-
(2000)
Molecular Microbiology
, vol.35
, Issue.6
, pp. 1560-1572
-
-
Fernandez De Henestrosa, A.R.1
Ogi, T.2
Aoyagi, S.3
Chafin, D.4
Hayes, J.J.5
Ohmori, H.6
Woodgate, R.7
-
21
-
-
0021871032
-
Role of Escherichia coli RecA protein in SOS induction and post-replication repair
-
DOI 10.1016/S0300-9084(85)80079-1
-
Moreau PL (1985) Role of Escherichia coli RecA protein in SOS induction and post-replication repair. Biochimie 67:353-356. (Pubitemid 15010572)
-
(1985)
Biochimie
, vol.67
, Issue.3-4
, pp. 353-356
-
-
Moreau, P.L.1
-
22
-
-
0141532928
-
DNA array analysis of gene expression in response to UV irradiation in Escherichia coli
-
DOI 10.1016/S0923-2508(03)00149-9
-
Quillardet P, Rouffaud MA, Bouige P (2003) DNA array analysis of gene expression in response to UV irradiation in Escherichia coli. Res Microbiol 154:559-572. (Pubitemid 37177000)
-
(2003)
Research in Microbiology
, vol.154
, Issue.8
, pp. 559-572
-
-
Quillardet, P.1
Rouffaud, M.-A.2
Bouige, P.3
-
23
-
-
33645239646
-
Interplay between replication and recombination in Escherichia coli: Impact of the alternative DNA polymerases
-
Delmas S, Matic I (2006) Interplay between replication and recombination in Escherichia coli: Impact of the alternative DNA polymerases. Proc Natl Acad Sci USA 103:4564-4569.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4564-4569
-
-
Delmas, S.1
Matic, I.2
-
24
-
-
0034574554
-
The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity
-
Wagner J, Fujii S, Gruz P, Nohmi T, Fuchs RP (2000) The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity. EMBO Rep 1:484-488.
-
(2000)
EMBO Rep
, vol.1
, pp. 484-488
-
-
Wagner, J.1
Fujii, S.2
Gruz, P.3
Nohmi, T.4
Fuchs, R.P.5
-
25
-
-
0031025093
-
DNA double-strand breaks caused by replication arrest
-
DOI 10.1093/emboj/16.2.430
-
Michel B, Ehrlich SD, Uzest M (1997) DNA double-strand breaks caused by replication arrest. EMBO J 16:430-438. (Pubitemid 27049398)
-
(1997)
EMBO Journal
, vol.16
, Issue.2
, pp. 430-438
-
-
Michel, B.1
Ehrlich, S.D.2
Uzest, M.3
-
26
-
-
33750946025
-
Replication arrest-stimulated recombination: Dependence on the RecA paralog, RadA/Sms and translesion polymerase, DinB
-
DOI 10.1016/j.dnarep.2006.06.008, PII S1568786406002114
-
Lovett ST (2006) Replication arrest-stimulated recombination: Dependence on the RecA paralog, RadA/Sms and translesion polymerase, DinB. DNA Repair 5:1421-1427. (Pubitemid 44739448)
-
(2006)
DNA Repair
, vol.5
, Issue.12
, pp. 1421-1427
-
-
Lovett, S.T.1
-
27
-
-
0030849316
-
- recombination by the mutagenesis complex UmuD'C
-
DOI 10.1006/jmbi.1997.1098
-
Boudsocq F, Campbell M, Devoret R, Bailone A (1997) Quantitation of the inhibition of Hfr x F- recombination by the mutagenesis complex UmuD′C. J Mol Biol 270:201-211. (Pubitemid 27296681)
-
(1997)
Journal of Molecular Biology
, vol.270
, Issue.2
, pp. 201-211
-
-
Boudsocq, F.1
Campbell, M.2
Devoret, R.3
Bailone, A.4
-
28
-
-
0024121518
-
RecA-mediated cleavage activates UmuD for mutagenesis: Mechanistic relationship between transcriptional derepression and posttranslational activation
-
DOI 10.1073/pnas.85.6.1816
-
Nohmi T, Battista JR, Dodson LA, Walker GC (1988) RecA-mediated cleavage activates UmuD for mutagenesis: Mechanistic relationship between transcriptional derepression and posttranslational activation. Proc Natl Acad Sci USA 85:1816-1820. (Pubitemid 24315773)
-
(1988)
Proceedings of the National Academy of Sciences of the United States of America
, vol.85
, Issue.6
, pp. 1816-1820
-
-
Nohmi, T.1
Battista, J.R.2
Dodson, L.A.3
Walker, G.C.4
-
29
-
-
0028102267
-
Biochemistry of homologous recombination in Escherichia coli
-
Kowalczykowski SC, Dixon DA, Eggleston AK, Lauder SD, Rehrauer WM (1994) Biochemistry of homologous recombination in Escherichia coli. Microbiol Rev 58:401-465. (Pubitemid 24279099)
-
(1994)
Microbiological Reviews
, vol.58
, Issue.3
, pp. 401-465
-
-
Kowalczykowski, E.C.1
Dixon, D.A.2
Eggleston, A.K.3
Lauder, S.D.4
Rehrauer, W.M.5
-
30
-
-
0142215588
-
Type I restriction enzyme with RecA protein promotes illegitimate recombination
-
DOI 10.1016/j.plasmid.2003.07.001
-
Kusano K, Asami Y, Fujita A, Tanokura M, Kobayashi I (2003) Type I restriction enzyme with RecA protein promotes illegitimate recombination. Plasmid 50:202-212. (Pubitemid 37324876)
-
(2003)
Plasmid
, vol.50
, Issue.3
, pp. 202-212
-
-
Kusano, K.1
Asami, Y.2
Fujita, A.3
Tanokura, M.4
Kobayashi, I.5
-
31
-
-
0028147848
-
Deletion between direct repeats in T7 DNA stimulated by double-strand breaks
-
Kong D, Masker W (1994) Deletion between direct repeats in T7 DNA stimulated by double-strand breaks. J Bacteriol 176:5904-5911. (Pubitemid 24309926)
-
(1994)
Journal of Bacteriology
, vol.176
, Issue.19
, pp. 5904-5911
-
-
Kong, D.1
Masker, W.2
-
32
-
-
34547850193
-
Polymerase switching in DNA replication
-
Lovett ST (2007) Polymerase switching in DNA replication. Mol Cell 27:523-526.
-
(2007)
Mol Cell
, vol.27
, pp. 523-526
-
-
Lovett, S.T.1
-
33
-
-
0035816649
-
DNA repair excision nuclease attacks undamaged DNA: A potential source of spontaneous mutations
-
DOI 10.1074/jbc.M101032200
-
Branum ME, Reardon JT, Sancar A (2001) DNA repair excision nuclease attacks undamaged DNA. A potential source of spontaneous mutations. J Biol Chem 276:25421-25426. (Pubitemid 37413031)
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.27
, pp. 25421-25426
-
-
Branum, M.E.1
Reardon, J.T.2
Sancar, A.3
-
34
-
-
0027309530
-
The influence of primary and secondary DNA structure in deletion and duplication between direct repeats in Escherichia coli
-
Trinh TQ, Sinden RR (1993) The influence of primary and secondary DNA structure in deletion and duplication between direct repeats in Escherichia coli. Genetics 134:409-422. (Pubitemid 23156938)
-
(1993)
Genetics
, vol.134
, Issue.2
, pp. 409-422
-
-
Trinh, T.Q.1
Sinden, R.R.2
-
35
-
-
0029949084
-
Stabilization of diverged tandem repeats by mismatch repair: Evidence for deletion formation via a misaligned replication intermediate
-
DOI 10.1073/pnas.93.14.7120
-
Lovett ST, Feschenko VV (1996) Stabilization of diverged tandem repeats by mismatch repair: Evidence for deletion formation via a misaligned replication intermediate. Proc Natl Acad Sci USA 93:7120-7124. (Pubitemid 26243512)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.14
, pp. 7120-7124
-
-
Lovett, S.T.1
Feschenko, V.V.2
-
36
-
-
0031443646
-
Multiple pathways for SOS-induced mutagenesis in Escherichia coli: An overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA
-
DOI 10.1073/pnas.94.25.13792
-
Kim SR, et al. (1997) Multiple pathways for SOS-induced mutagenesis in Escherichia coli: An overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA. Proc Natl Acad Sci USA 94:13792-13797. (Pubitemid 28009663)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.25
, pp. 13792-13797
-
-
Kim, S.-R.1
Maenhaut-Michel, G.2
Yamada, M.3
Yamamoto, Y.4
Matsui, K.5
Sofuni, T.6
Nohmi, T.7
Ohmori, H.8
-
38
-
-
0031720087
-
Escherichia coli HU protein suppresses DNA-gyrase-mediated illegitimate recombination and SOS induction
-
DOI 10.1046/j.1365-2443.1998.00208.x
-
Shanado Y, Kato J, Ikeda H (1998) Escherichia coli HU protein suppresses DNA-gyrase-mediated illegitimate recombination and SOS induction. Genes Cells 3:511-520. (Pubitemid 28475321)
-
(1998)
Genes to Cells
, vol.3
, Issue.8
, pp. 511-520
-
-
Shanado, Y.1
Kato, J.-I.2
Ikeda, H.3
-
39
-
-
33645350868
-
Specificity of replicative and SOS-inducible DNA polymerases in frameshift mutagenesis: Mutability of Salmonella typhimurium strains overexpressing SOS-inducible DNA polymerases to 30 chemical mutagens
-
Matsui K, Yamada M, Imai M, Yamamoto K, Nohmi T (2006) Specificity of replicative and SOS-inducible DNA polymerases in frameshift mutagenesis: Mutability of Salmonella typhimurium strains overexpressing SOS-inducible DNA polymerases to 30 chemical mutagens. DNA Repair 5:465-478.
-
(2006)
DNA Repair
, vol.5
, pp. 465-478
-
-
Matsui, K.1
Yamada, M.2
Imai, M.3
Yamamoto, K.4
Nohmi, T.5
-
40
-
-
34249789279
-
Spontaneous DNA breakage in single living Escherichia coli cells
-
DOI 10.1038/ng2051, PII NG2051
-
Pennington JM, Rosenberg SM (2007) Spontaneous DNA breakage in single living Escherichia coli cells. Nat Genet 39:797-802. (Pubitemid 46848597)
-
(2007)
Nature Genetics
, vol.39
, Issue.6
, pp. 797-802
-
-
Pennington, J.M.1
Rosenberg, S.M.2
-
41
-
-
0035422829
-
2C)
-
DOI 10.1093/emboj/20.15.4287
-
Ferentz AE, Walker GC, Wagner G (2001) Converting a DNA damage checkpoint effector (UmuD2C) into a lesion bypass polymerase (UmuD′2C). EMBO J 20:4287-4298. (Pubitemid 32751844)
-
(2001)
EMBO Journal
, vol.20
, Issue.15
, pp. 4287-4298
-
-
Ferentz, A.E.1
Walker, G.C.2
Wagner, G.3
-
42
-
-
24944477416
-
A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation
-
DOI 10.1016/j.molcel.2005.07.025, PII S1097276505015224
-
Ponder RG, Fonville NC, Rosenberg SM (2005) A switch from high-fidelity to errorprone DNA double-strand break repair underlies stress-induced mutation. Mol Cell 19:791-804. (Pubitemid 41316673)
-
(2005)
Molecular Cell
, vol.19
, Issue.6
, pp. 791-804
-
-
Ponder, R.G.1
Fonville, N.C.2
Rosenberg, S.M.3
-
43
-
-
1642382214
-
Snapshots of replication through an abasic lesion: Structural basis for base substitutions and frameshifts
-
DOI 10.1016/S1097-2765(04)00101-7, PII S1097276504001017
-
Ling H, Boudsocq F, Woodgate R, Yang W (2004) Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts. Mol Cell 13:751-762. (Pubitemid 38368130)
-
(2004)
Molecular Cell
, vol.13
, Issue.5
, pp. 751-762
-
-
Ling, H.1
Boudsocq, F.2
Woodgate, R.3
Yang, W.4
-
44
-
-
0004098411
-
-
(Jones and Bartlett, Sudbury, MA), 2nd Ed.
-
Maloy SR, Cronan JE, Jr, Freifelder D (1994) Microbial Genetics (Jones and Bartlett, Sudbury, MA), 2nd Ed.
-
(1994)
Microbial Genetics
-
-
Maloy, S.R.1
Cronan Jr., J.E.2
Freifelder, D.3
-
47
-
-
0029080490
-
Genetic analysis of the modABCD (molybdate transport) operon of Escherichia coli
-
Maupin-Furlow JA, et al. (1995) Genetic analysis of the modABCD (molybdate transport) operon of Escherichia coli. J Bacteriol 177:4851-4856.
-
(1995)
J Bacteriol
, vol.177
, pp. 4851-4856
-
-
Maupin-Furlow, J.A.1
-
49
-
-
0001313535
-
The distribution of the numbers of mutants in bacterial populations
-
Lea DE, Coulson CA (1949) The distribution of the numbers of mutants in bacterial populations. J Genet 49:264-285.
-
(1949)
J Genet
, vol.49
, pp. 264-285
-
-
Lea, D.E.1
Coulson, C.A.2
-
50
-
-
28444484984
-
Genomic buffering mitigates the effects of deleterious mutations in bacteria
-
DOI 10.1038/ng1676, PII N1676
-
Maisnier-Patin S, et al. (2005) Genomic buffering mitigates the effects of deleterious mutations in bacteria. Nat Genet 37:1376-1379. (Pubitemid 41722196)
-
(2005)
Nature Genetics
, vol.37
, Issue.12
, pp. 1376-1379
-
-
Maisnier-Patin, S.1
Roth, J.R.2
Fredriksson, A.3
Nystrom, T.4
Berg, O.G.5
Andersson, D.I.6
-
51
-
-
0034050292
-
Detection of DNA damage in prokaryotes by terminal deoxyribonucleotide transferase-mediated dUTP nick end labeling
-
DOI 10.1128/AEM.66.3.1001-1006.2000
-
Rohwer F, Azam F (2000) Detection of DNA damage in prokaryotes by terminal deoxyribonucleotide transferase-mediated dUTP nick end labeling. Appl Environ Microbiol 66:1001-1006. (Pubitemid 30130019)
-
(2000)
Applied and Environmental Microbiology
, vol.66
, Issue.3
, pp. 1001-1006
-
-
Rohwer, F.1
Azam, F.2
|